mRNA_M-pyrifera_M_contig104043.860.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104043.860.1
Unique NamemRNA_M-pyrifera_M_contig104043.860.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104043.860.1 vs. uniprot
Match: UPI00055E8A3C (GNAT family N-acetyltransferase n=1 Tax=Streptomyces yeochonensis TaxID=89050 RepID=UPI00055E8A3C)

HSP 1 Score: 50.1 bits (118), Expect = 3.700e-5
Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 1 
Query:    1 MICLATPRLLLRTWRVED---------GPDLLRLVPGDAPTDGQLLFNSSACSVLGADEPAASGLERFERSWATDGFGIFALESFESGSLIGLAGV 261
            M  + TPRL+LR WR ED          P+++R + GD              SV    E  A  +ER ER W T+GFG+FA+E  ++G   G  G+
Sbjct:    1 MTTIETPRLVLRRWREEDVEPYAAVNADPEVMRWI-GDG-------------SVRDTAETRAH-IERIERLWETEGFGLFAVELRDTGEFAGFTGL 81
[Close]
BLAST of mRNA_M-pyrifera_M_contig104043.860.1 vs. uniprot
Match: A0A1G7GUX7_9RHOB (Protein N-acetyltransferase, RimJ/RimL family n=1 Tax=Celeribacter baekdonensis TaxID=875171 RepID=A0A1G7GUX7_9RHOB)

HSP 1 Score: 49.3 bits (116), Expect = 6.400e-5
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:   16 TPRLLLRTWRVEDGPDLLRLVPGDAPTDGQLLFNSSACSVLGADEPAASGLERFERSWATDGFGIFALESFESGSLIGLAGV 261
            T RLLLR W+ ED      +  GD P   + + N S  +     + AA  +  FER W   GFG+FA+ES ++G LIG  G+
Sbjct:    8 TERLLLRGWKPEDHAPFAAMC-GD-PEVMRYIGNGSTRTP----DDAARYIGSFEREWTERGFGLFAVESKQTGGLIGFTGL 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104043.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00055E8A3C3.700e-535.42GNAT family N-acetyltransferase n=1 Tax=Streptomyc... [more]
A0A1G7GUX7_9RHOB6.400e-539.02Protein N-acetyltransferase, RimJ/RimL family n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104043contigM-pyrifera_M_contig104043:55..360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue4.1e-07
Seed eggNOG ortholog1896.JOAU01000010_gene453
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins
EggNOG OGs2GP87@201174,COG1670@1,COG1670@2
COG Functional cat.J
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.684199-CDS-M-pyrifera_M_contig104043:54..3601622815546.684199-CDS-M-pyrifera_M_contig104043:54..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104043 55..360 -
1692277458.0578406-CDS-M-pyrifera_M_contig104043:54..3601692277458.0578406-CDS-M-pyrifera_M_contig104043:54..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104043 55..360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104043.860.1prot_M-pyrifera_M_contig104043.860.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104043 55..360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104043.860.1

>prot_M-pyrifera_M_contig104043.860.1 ID=prot_M-pyrifera_M_contig104043.860.1|Name=mRNA_M-pyrifera_M_contig104043.860.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MICLATPRLLLRTWRVEDGPDLLRLVPGDAPTDGQLLFNSSACSVLGADE
PAASGLERFERSWATDGFGIFALESFESGSLIGLAGVQTRPTPDATLALV
WR
back to top

mRNA from alignment at M-pyrifera_M_contig104043:55..360-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104043.860.1 ID=mRNA_M-pyrifera_M_contig104043.860.1|Name=mRNA_M-pyrifera_M_contig104043.860.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig104043:55..360- (Macrocystis pyrifera P11B4 male)
ATGATCTGTCTGGCAACGCCTCGGCTGCTGCTGCGTACCTGGCGCGTCGA
AGACGGACCGGATCTCCTCCGACTCGTCCCCGGCGACGCCCCGACCGACG
GGCAATTGCTGTTCAACTCCAGCGCGTGCTCGGTGCTCGGCGCTGATGAG
CCGGCTGCGTCGGGACTCGAACGATTCGAACGATCGTGGGCCACCGACGG
GTTCGGCATCTTCGCCCTCGAGTCGTTCGAGTCAGGCTCGCTCATCGGTC
TCGCCGGCGTGCAGACTCGACCAACCCCCGACGCCACCCTCGCTCTGGTA
TGGCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104043:55..360-

>mRNA_M-pyrifera_M_contig104043.860.1 ID=mRNA_M-pyrifera_M_contig104043.860.1|Name=mRNA_M-pyrifera_M_contig104043.860.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig104043:55..360- (Macrocystis pyrifera P11B4 male)
ATGATCTGTCTGGCAACGCCTCGGCTGCTGCTGCGTACCTGGCGCGTCGA
AGACGGACCGGATCTCCTCCGACTCGTCCCCGGCGACGCCCCGACCGACG
GGCAATTGCTGTTCAACTCCAGCGCGTGCTCGGTGCTCGGCGCTGATGAG
CCGGCTGCGTCGGGACTCGAACGATTCGAACGATCGTGGGCCACCGACGG
GTTCGGCATCTTCGCCCTCGAGTCGTTCGAGTCAGGCTCGCTCATCGGTC
TCGCCGGCGTGCAGACTCGACCAACCCCCGACGCCACCCTCGCTCTGGTA
TGGCGCATGATCTGTCTGGCAACGCCTCGGCTGCTGCTGCGTACCTGGCG
CGTCGAAGACGGACCGGATCTCCTCCGACTCGTCCCCGGCGACGCCCCGA
CCGACGGGCAATTGCTGTTCAACTCCAGCGCGTGCTCGGTGCTCGGCGCT
GATGAGCCGGCTGCGTCGGGACTCGAACGATTCGAACGATCGTGGGCCAC
CGACGGGTTCGGCATCTTCGCCCTCGAGTCGTTCGAGTCAGGCTCGCTCA
TCGGTCTCGCCGGCGTGCAGACTCGACCAACCCCCGACGCCACCCTCGCT
CTGGTATGGCGC
back to top