mRNA_M-pyrifera_M_contig103954.839.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103954.839.1
Unique NamemRNA_M-pyrifera_M_contig103954.839.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: A0A0D2KB63_9CHLO (RNA helicase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KB63_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 3.030e-12
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQAVRAG--GRVLLVAPSDGA 192
            W NP LN EQR AV   L   H P  ++VFGPPGTGK+ T+VE  +Q +R     RVLL+APS+ A
Sbjct:  467 WVNPFLNQEQRGAVEAVLRGGHAPAPYLVFGPPGTGKTSTLVEAAVQVLRTQPFARVLLLAPSNTA 532
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BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: A0A1X7UKT7_AMPQE (RNA helicase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UKT7_AMPQE)

HSP 1 Score: 68.9 bits (167), Expect = 4.150e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQ--AVRAGG-RVLLVAPSDGA 192
            +FNP LN  QR+AVGR L A+  P  ++VFGPPGTGK+VTVVE ++Q  ++  G  R+L  APS+ A
Sbjct:  624 YFNPQLNERQRAAVGRILGAQGRPAPYVVFGPPGTGKTVTVVEAILQVYSLSTGNCRILASAPSNSA 690
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BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: A0A444T540_ARMVU (RNA helicase n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444T540_ARMVU)

HSP 1 Score: 68.9 bits (167), Expect = 4.160e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQA--VRAGGRVLLVAPSDGA 192
            WFN  LN +QR AV R L  R+ P  +I+FGPPGTGK+VT+VE+++Q   +    R+L+V+PS+ A
Sbjct:  835 WFNESLNDDQRKAVKRILEGRNRPTPYIIFGPPGTGKTVTLVEVILQIYFLIPHSRILVVSPSNSA 900
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BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: UPI001AD6432E (RNA helicase Mov10l1 isoform X2 n=1 Tax=Puma yagouaroundi TaxID=1608482 RepID=UPI001AD6432E)

HSP 1 Score: 68.6 bits (166), Expect = 5.610e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQAVRA--GGRVLLVAPSDGA 192
            +FNPVLN  Q+ AV R LS    P  +I+FGPPGTGK+VT++E V+Q  RA    R+L+ APS+ A
Sbjct:  179 FFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHRALPDSRILVCAPSNSA 244
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BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: A0A6P6I2W6_PUMCO (RNA helicase Mov10l1-like n=1 Tax=Puma concolor TaxID=9696 RepID=A0A6P6I2W6_PUMCO)

HSP 1 Score: 68.6 bits (166), Expect = 5.650e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQAVRA--GGRVLLVAPSDGA 192
            +FNPVLN  Q+ AV R LS    P  +I+FGPPGTGK+VT++E V+Q  RA    R+L+ APS+ A
Sbjct:  742 FFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHRALPDSRILVCAPSNSA 807
[Close]
BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: UPI001FF13026 (RNA helicase Mov10l1-like isoform X1 n=3 Tax=Prionailurus viverrinus TaxID=61388 RepID=UPI001FF13026)

HSP 1 Score: 68.6 bits (166), Expect = 5.680e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQAVRA--GGRVLLVAPSDGA 192
            +FNPVLN  Q+ AV R LS    P  +I+FGPPGTGK+VT++E V+Q  RA    R+L+ APS+ A
Sbjct:  738 FFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHRALPDSRILVCAPSNSA 803
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BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: A0A6J2ACF4_ACIJB (RNA helicase Mov10l1 isoform X2 n=7 Tax=Felidae TaxID=9681 RepID=A0A6J2ACF4_ACIJB)

HSP 1 Score: 68.6 bits (166), Expect = 5.680e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQAVRA--GGRVLLVAPSDGA 192
            +FNPVLN  Q+ AV R LS    P  +I+FGPPGTGK+VT++E V+Q  RA    R+L+ APS+ A
Sbjct:  739 FFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHRALPDSRILVCAPSNSA 804
[Close]
BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: A0A6J2A9L0_ACIJB (RNA helicase Mov10l1 isoform X1 n=15 Tax=Felidae TaxID=9681 RepID=A0A6J2A9L0_ACIJB)

HSP 1 Score: 68.6 bits (166), Expect = 5.680e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQAVRA--GGRVLLVAPSDGA 192
            +FNPVLN  Q+ AV R LS    P  +I+FGPPGTGK+VT++E V+Q  RA    R+L+ APS+ A
Sbjct:  742 FFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHRALPDSRILVCAPSNSA 807
[Close]
BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: UPI001E264C5C (RNA helicase Mov10l1 isoform X1 n=2 Tax=Leopardus geoffroyi TaxID=46844 RepID=UPI001E264C5C)

HSP 1 Score: 68.6 bits (166), Expect = 5.680e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQAVRA--GGRVLLVAPSDGA 192
            +FNPVLN  Q+ AV R LS    P  +I+FGPPGTGK+VT++E V+Q  RA    R+L+ APS+ A
Sbjct:  742 FFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHRALPDSRILVCAPSNSA 807
[Close]
BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Match: A0A8B7TH27_HIPAR (RNA helicase Mov10l1 n=1 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7TH27_HIPAR)

HSP 1 Score: 68.2 bits (165), Expect = 7.640e-12
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQAVRA--GGRVLLVAPSDGA 192
            +FNPVLN  Q+ AV R LS    P  +I+FGPPGTGK+VT++E V+Q   A    RVL+ APS+ A
Sbjct:   86 FFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVYHALPDSRVLICAPSNSA 151
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103954.839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2KB63_9CHLO3.030e-1253.03RNA helicase n=1 Tax=Monoraphidium neglectum TaxID... [more]
A0A1X7UKT7_AMPQE4.150e-1253.73RNA helicase n=1 Tax=Amphimedon queenslandica TaxI... [more]
A0A444T540_ARMVU4.160e-1250.00RNA helicase n=1 Tax=Armadillidium vulgare TaxID=1... [more]
UPI001AD6432E5.610e-1253.03RNA helicase Mov10l1 isoform X2 n=1 Tax=Puma yagou... [more]
A0A6P6I2W6_PUMCO5.650e-1253.03RNA helicase Mov10l1-like n=1 Tax=Puma concolor Ta... [more]
UPI001FF130265.680e-1253.03RNA helicase Mov10l1-like isoform X1 n=3 Tax=Prion... [more]
A0A6J2ACF4_ACIJB5.680e-1253.03RNA helicase Mov10l1 isoform X2 n=7 Tax=Felidae Ta... [more]
A0A6J2A9L0_ACIJB5.680e-1253.03RNA helicase Mov10l1 isoform X1 n=15 Tax=Felidae T... [more]
UPI001E264C5C5.680e-1253.03RNA helicase Mov10l1 isoform X1 n=2 Tax=Leopardus ... [more]
A0A8B7TH27_HIPAR7.640e-1253.03RNA helicase Mov10l1 n=1 Tax=Hipposideros armiger ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103954contigM-pyrifera_M_contig103954:3..194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue9.5e-10
Seed eggNOG ortholog400682.PAC_15716943
Preferred nameMOV10L1
KEGG koko:K13983,ko:K18422,ko:K18432
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000184,GO:0000226,GO:0000280,GO:0000287,GO:0000578,GO:0000956,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007293,GO:0007304,GO:0007306,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007318,GO:0007350,GO:0007351,GO:0007389,GO:0007517,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008026,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008283,GO:0008358,GO:0008595,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009888,GO:0009892,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0010927,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019439,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030424,GO:0030425,GO:0030554,GO:0030703,GO:0030707,GO:0030855,GO:0031023,GO:0031047,GO:0032259,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032989,GO:0032991,GO:0033036,GO:0034584,GO:0034587,GO:0034641,GO:0034655,GO:0034660,GO:0035194,GO:0035282,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0036477,GO:0040029,GO:0042623,GO:0042995,GO:0043005,GO:0043025,GO:0043046,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044703,GO:0044728,GO:0045202,GO:0045495,GO:0045786,GO:0045787,GO:0046483,GO:0046700,GO:0046843,GO:0046872,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0051179,GO:0051276,GO:0051321,GO:0051704,GO:0051726,GO:0060255,GO:0060293,GO:0060429,GO:0061061,GO:0061982,GO:0065007,GO:0070035,GO:0070725,GO:0071103,GO:0071546,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0120025,GO:0120038,GO:0140013,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901976,GO:1901977,GO:1903046,GO:1990904,GO:2000001,GO:2000002,GO:2001020,GO:2001021
EggNOG free text desc.Mov10 RISC complex RNA helicase like 1
EggNOG OGs38EBX@33154,3BCEQ@33208,COG1112@1,KOG1804@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03036
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.30853-CDS-M-pyrifera_M_contig103954:2..1941622815545.30853-CDS-M-pyrifera_M_contig103954:2..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103954 3..194 -
1692277457.3273332-CDS-M-pyrifera_M_contig103954:2..1941692277457.3273332-CDS-M-pyrifera_M_contig103954:2..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103954 3..194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103954.839.1prot_M-pyrifera_M_contig103954.839.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103954 3..194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103954.839.1

>prot_M-pyrifera_M_contig103954.839.1 ID=prot_M-pyrifera_M_contig103954.839.1|Name=mRNA_M-pyrifera_M_contig103954.839.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
WFNPVLNSEQRSAVGRALSARHCPFAHIVFGPPGTGKSVTVVELVMQAVR
AGGRVLLVAPSDGA
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mRNA from alignment at M-pyrifera_M_contig103954:3..194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103954.839.1 ID=mRNA_M-pyrifera_M_contig103954.839.1|Name=mRNA_M-pyrifera_M_contig103954.839.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig103954:3..194- (Macrocystis pyrifera P11B4 male)
TGGTTCAACCCGGTGCTGAACAGCGAGCAGCGCAGCGCAGTCGGCCGCGC
GCTCTCCGCTCGCCACTGCCCGTTCGCCCACATCGTGTTCGGCCCACCGG
GCACCGGCAAGTCCGTCACCGTCGTGGAGCTGGTGATGCAGGCGGTGAGG
GCGGGCGGGCGAGTGCTGCTCGTCGCGCCCTCCGACGGCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103954:3..194-

>mRNA_M-pyrifera_M_contig103954.839.1 ID=mRNA_M-pyrifera_M_contig103954.839.1|Name=mRNA_M-pyrifera_M_contig103954.839.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig103954:3..194- (Macrocystis pyrifera P11B4 male)
TGGTTCAACCCGGTGCTGAACAGCGAGCAGCGCAGCGCAGTCGGCCGCGC
GCTCTCCGCTCGCCACTGCCCGTTCGCCCACATCGTGTTCGGCCCACCGG
GCACCGGCAAGTCCGTCACCGTCGTGGAGCTGGTGATGCAGGCGGTGAGG
GCGGGCGGGCGAGTGCTGCTCGTCGCGCCCTCCGACGGCGCGTGGTTCAA
CCCGGTGCTGAACAGCGAGCAGCGCAGCGCAGTCGGCCGCGCGCTCTCCG
CTCGCCACTGCCCGTTCGCCCACATCGTGTTCGGCCCACCGGGCACCGGC
AAGTCCGTCACCGTCGTGGAGCTGGTGATGCAGGCGGTGAGGGCGGGCGG
GCGAGTGCTGCTCGTCGCGCCCTCCGACGGCGCG
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