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Homology
BLAST of mRNA_M-pyrifera_M_contig10395.837.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE) HSP 1 Score: 155 bits (392), Expect = 3.910e-38 Identity = 89/142 (62.68%), Postives = 100/142 (70.42%), Query Frame = 1
Query: 1 DVPDPHPTVLLDLGRRCIVSGLQRKISRQACNPLGLCAGSLPSWCAGLPEEFPSLFSLDVRLSLLKKTAFGMARGVAHVQARNFEKAKKVEEDSPITFLLGSGLESLGVARRGGALTAGAGGAGGAES-----LPLHEVLRQ 411
D+PDPHP+VL DL RRCIVSGLQRK ACNPL LC GSLPSWC GLP EFPSLFSL+ RLSLL+KTAFGMAR VAHVQ EKAK VE+ + LGS + G AR GG + GA GA+S +PL E+LRQ
Sbjct: 1445 DLPDPHPSVLHDLARRCIVSGLQRK----ACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQ----EKAKNVEDIPAVAAPLGS---AAGTARAGGGVLRRVVGADGADSPASLAMPLPELLRQ 1575
BLAST of mRNA_M-pyrifera_M_contig10395.837.1 vs. uniprot
Match: D7FHF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF2_ECTSI) HSP 1 Score: 140 bits (353), Expect = 1.180e-37 Identity = 80/128 (62.50%), Postives = 91/128 (71.09%), Query Frame = 1
Query: 70 RKISRQACNPLGLCAGSLPSWCAGLPEEFPSLFSLDVRLSLLKKTAFGMARGVAHVQARNFEKAKKVEEDSPITFLLGSGLESLGVARRGGALTAGAGGAGGAES-----LPLHEVLRQLGRLGRLTV 438
R S+QACNPL LC GSLPSWC GLP EFPSLFSL+ RLSLL+KTAFGMAR VAHVQ EKAK VE+ + L S + G AR GG + GGAGGA+S +PL E+LRQLGRLGRLT+
Sbjct: 3 RGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQ----EKAKNVEDIPAVAAPLRS---AAGTARAGGGVLRRVGGAGGADSPASLAMPLPELLRQLGRLGRLTI 123
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-25_002610.1 |
Exons | 4 |
Model size | 1047 |
Cds size | 1047 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815545.1761749-CDS-M-pyrifera_M_contig10395:4705..5317 | 1622815545.1761749-CDS-M-pyrifera_M_contig10395:4705..5317 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10395 4706..5317 - |
1692277457.2854493-CDS-M-pyrifera_M_contig10395:4705..5317 | 1692277457.2854493-CDS-M-pyrifera_M_contig10395:4705..5317 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10395 4706..5317 - |
1622815545.1896832-CDS-M-pyrifera_M_contig10395:6520..6703 | 1622815545.1896832-CDS-M-pyrifera_M_contig10395:6520..6703 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10395 6521..6703 - |
1692277457.2940927-CDS-M-pyrifera_M_contig10395:6520..6703 | 1692277457.2940927-CDS-M-pyrifera_M_contig10395:6520..6703 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10395 6521..6703 - |
1622815545.202195-CDS-M-pyrifera_M_contig10395:7341..7506 | 1622815545.202195-CDS-M-pyrifera_M_contig10395:7341..7506 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10395 7342..7506 - |
1692277457.3016748-CDS-M-pyrifera_M_contig10395:7341..7506 | 1692277457.3016748-CDS-M-pyrifera_M_contig10395:7341..7506 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10395 7342..7506 - |
1622815545.2177215-CDS-M-pyrifera_M_contig10395:9960..10047 | 1622815545.2177215-CDS-M-pyrifera_M_contig10395:9960..10047 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10395 9961..10047 - |
1692277457.3094833-CDS-M-pyrifera_M_contig10395:9960..10047 | 1692277457.3094833-CDS-M-pyrifera_M_contig10395:9960..10047 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10395 9961..10047 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10395.837.1 >prot_M-pyrifera_M_contig10395.837.1 ID=prot_M-pyrifera_M_contig10395.837.1|Name=mRNA_M-pyrifera_M_contig10395.837.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=349bp
DVPDPHPTVLLDLGRRCIVSGLQRKISRQACNPLGLCAGSLPSWCAGLPE EFPSLFSLDVRLSLLKKTAFGMARGVAHVQARNFEKAKKVEEDSPITFLL GSGLESLGVARRGGALTAGAGGAGGAESLPLHEVLRQLGRLGRLTVLLSR DSILEMATFLFGLLINGQQPPTTTRGGSGSSSSSHPPQPSSSSSSSAAAA AAAASAATAAAAAAAAAGGGGNRNGRGGGGGTSSGAIGAGSSAAGRSDGG GRRGQAPQTSAGSTSDRRRLGSASRAFSGGGGLGFAGRDAHEDQEEEEEE EEEGWRVGEEEEEEEEEEEDDDGGMWGMGDGGEEEYEEEEDGEGELDEV back to topmRNA from alignment at M-pyrifera_M_contig10395:4706..10047- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig10395.837.1 ID=mRNA_M-pyrifera_M_contig10395.837.1|Name=mRNA_M-pyrifera_M_contig10395.837.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5342bp|location=Sequence derived from alignment at M-pyrifera_M_contig10395:4706..10047- (Macrocystis pyrifera P11B4 male) GATGTGCCCGACCCCCACCCTACGGTTCTGCTAGACCTTGGCCGGCGGTG
CATCGTGTCAGGGCTGCAACGGAAAATATCAAGACAGGTATGATGATATA
TATATGATAAGATACCGTGGTTGAACGTACAGCAGTAGAGCTGTGTTTGT
GTTTGTGTTTCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTAGACCC
GTTCGGGAGACAATAGGGCCCTCTATTAAGGCCGATGCCCGATACGATGC
CGGTAAAATCGTGTTGCCTTTTCGGAGGCCAAGATCTATGAAAATCGTTG
GAAACCATAAAAAAAGGAGTTCCGAAAAAAAGCTGGAAATCACCCCCGGG
GTTGAAATACGAAAAAAAAACAGCACCTGGTAGTATTTATAATGTAGACT
TGAAAGCTTCAGCTGTATTTGGAGGTGACCAGCTTGCCAAAATAGAAAGT
TCAGGCATTTTTTTTTTTTTCGTTTTTTTTTGCGCACGTACGTGGTTATA
CGTAAAAACACGACGTGGCTGTTGTTTCACTTCGATTTTTAAAATTAGAA
TTCATGCCGGCTGGTGTCGCCCAAAATTTTCTTTTTTTTTTACTCGTCCG
GCGGTTTGTCTACTGTTTGGAAACATTTTGACTCGAAGTTAGTGGCAGTG
TGTCGCTGAGTTTACAGCGCATCTTCCGACGTTAGAATATTTCGAAAGCC
GAGGTGATTTCGTGAAAACAAAAATGTAGAAAATATGAAGAAAAAAAAAA
CACATGCCCTTTCGTTAAACAAGATGTATACCCGGAGTATGTCGAATATC
ATAGTGTATCGGGTATACTATAGTCCAAAACCCCTGTCTTGTGGATGGAT
CTATCCTCGCCGTCGCCTGTTTCGCCGTGCATCGAGAGATATGGCGTGCG
TACGGTCCCCTCTACAAAGTTGAGATACTACGAGGGGAAGCACGAAATGT
GCGATTCTCAGTCCAATTTATATTTTTCGGCCTGTGTGTGTGTGTGTGTG
TGTGTGTGTTTTTTTTTTTCGTGAAGGTAAGACGAAGGAATTACCGGCTG
CACCATTTTTTTTTTTTGTTTTTGTTTTTTCCGTCAGTTGTAGCCCAAAC
CGTACGTAGTTCACGAAAACAAAAAATCGTTTTTGCCCTTGGGTAGGTAG
GGCGTGTCAAAGTTTTCATCTCAATTTTTCGAAAAACACCAATTGAGAAA
GCGCCTGACCAACTGAAAAGTTATTGTTGGCTAGCCCAGTTCGATATTGA
TAGCGTCTGAACCACGAACCCTGCCTGTTAGTTTTTGGATTAAACTGTAT
GCCTTGCATGCGTGGATTGTCGCGGCTTGGTTGCTCGCTTGCGTGCATGC
TTGCTTGCTTCCTTGCTTGATTACTTGCTCGCATGAGTATTTGCGTGTGT
GTTTCTATTTTTTTGCTTGCTTGCTTGCTTGCTTGTTTGAGTATTTGCGT
GTGTCCTCGCTTGCTGGCTGGCTGGCTGGGTTTGATTGTTTGCTTCCTTC
CTGGCTTGGGTATTTGCGTGCTTGCTCCCTGGCTGGCTGGCTGACTGGGT
GGCTGGCTGGCTGGCTGGCTGGCTGGCTTGATTGCTTGCTTGCTTCGTTG
CGTATTTGCTTCCTTGCTGGCTGGCTGGCTGACAGGCTGACTTTGATTGC
TTCCTTGCTTGCTTGCGTATTTGCTTCCTTGATGGCTGGCTGGCTGGCTG
GCTGCCTGACTGGTCGACTTGATTGCCCCCTTGTTTACTTGCGTATATGC
TTCCTTGCTTGTGTGCTTGCTTCCTTCCCCTGTGACATACCACTGTGGCC
GTAAATTACAAGAACCACTTGGTCTTGATGCTTATGTATAACATCTCCTT
GTGTAGTTGTAGTCAGAACCCACATGGACCGTAAAACCAAAGTATCCCCG
TTTGTATACACACACCATGCTTGGCCTCTTTGACTGGTCACTATTACTAC
TAGTACTGTATTATGGCCCCCCGTAACAGTGGATGCCTCCCTTGGTTTCC
TGCAACCTGCTTGACCGATTCATTTTTATTTGTTCTATCGATGGTGCAGT
CCCTTTGCTGGCTTGTTCTCGCTTGGTTGGTGTTGGTGTTGGTGTTGCTG
GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTATTGGTGTCGACGGCGGC
GGCGGCGGCGGCGGCGGTGGTGTTGGTGGTAGTGGTGCTTGTTCTGGGGA
GCTTTATCGTTGTTGCTACCGCTATTGATGTCGCTGTTGCTCTTGCTGTT
GCTTCGGCTGTTGATGCTGTTTACGTTGCTGTTATCGTTGTTTTGGTGGT
GGTGGTGGTGGTGGTGGTGGTGCTTTTGCTGCTGCTGCTATTGTTGTTGC
TGTTGTCGCTGTTGTCGCTGTTGCTCTTGCTTTTGCTCTTGACCGTGATG
TTGTTCGCGTTGCTATTATTGTTATTTTTGGTGCTGCTGTTGCTGCTGCT
TCTGCTGCTGCTGCTGCTGCTGCTGGCGATTGCTGCTGGTGGTTGCGGCT
GGTGGTGGTGATGGTGGTGATGGATGCCGATGATGCTGCAGGCGTGCAAC
CCGCTCGGGCTGTGCGCGGGGTCGCTCCCATCTTGGTGTGCCGGCCTCCC
GGAGGAGTTCCCATCCCTGTTTTCTCTGGATGTTCGGCTGTCGCTCTTGA
AGAAGACTGCCTTCGGGATGGCTCGGGGTGTGGCTCATGTCCAGGCAAGA
AATTTCGTTTTGCTGATGACTGTTTTAGCAAAAATAACGATGTTGCTGCG
TACGTACGCACACCGTGTCGTGCATGGAGTGTATTATACTCTGCTATTAA
ATATATTGCTTATACCAGGTATACCATGTTACAGGCAGTAGTTAGTGCTA
CATCTTGTGTGCGCTGCACTACATGCTGTTACCGCTCATACTATCCATTC
TACGAATGATGTTTTGTGTTTTCTAACAATTACTTTTAAGTTCTGGTGCG
ACTATTACGGGGGACCATAGTAAATAGGACCAAATAATGTTAGCAAAAGT
AGGAAAATATGCAGGTTTCTGTGTATACAGTAGGTCCTATTTACTATGGT
CCTCCGAAATAGAGACGAATACGCGTACTTTTTTGTACCGGTATTGCGTT
TTATGTATGTACCTGGTGCTCTTTATGCTCTATTTCGACTGCTACTATTA
CGTGTGTCCCATAGTTAGTAGGACCTATGGTATACATAAAAACCTATATG
TTTACCTATTTTTACTAACAACATTTGGTCCCGTTAACTATGGACCCCCG
TAATACACACCTGCTATGTTTGTTGTGCGTGTGTCGATGCCTGCCTGTGC
TGCATGGCCCAAAATGTGTTGCGATAAAACTTTTGTAAATTCAGGAAAAA
GCCAAAAAGGTGGAGGAGGACAGCCCCATCACCTTTCTTCTCGGGTCGGG
GCTCGAGTCTCTGGGAGTTGCAAGGCGTGGGGGGGCGCTTACAGCGGGGG
CGGGGGGCGCGGGAGGGGCGGAGTCGTTGCCGCTGCACGAAGTTTTGAGG
CAGCTGGGCAGGCTCGGACGTCTCACGGTGCGTTGCCATGATATATATGT
GTGTTGGGCATATGCCCTCATTTGTCTGTTATTTTGTGTGTCCGTTTGGG
CCTTGAGTCGCCTTGAGTCTGAGTCTGCTTGAGTTTTGTTCTGTGTTTTT
ATCTGTGGTTGAGTGATTTGTGTGGATATGTCTGTGTTTTGTTTGATTTT
GTGTTTCTGTCAATGGTATGTGTGCGTGTGTCTTATACACTGACCGTCTG
ACAAGTGTTTTTGGGATTTTCTTAAGCTTGCCTGGAGCTTATTTTCATAG
TTTCCTTCGATCTTTTGTTACAGTTTTCTTGGAAGACTGTTCTTGAAACG
TTTGTTGCAGTACGCTTGTTCAACCTTCCTGCGTGACGCTTCTGTTGCTT
TTGCTAAAAGCTTTCTTGAGAACCTTCTTGTTTTTTTTTTTTGTACTTAC
GATACCGGTACGCTTTCTTGAAGCTTTTCTTCACTCCGTGTTACTTTTGT
ACCCGTTGTACTTCTCCCAACTTGTTAACCCTCCTCCCTCCCTACCTACC
TCCTCCCTCTTCCCCATGTGCCATTGTGGCAAAGCTGTAGGTAAAGTGTA
GAACTCACTGTAGGAGAATGCGAACTGTACAAGGAGGAACGGGTTGTGCT
AGAGGAGATGAGGGGGAAAATGACGAGTATGGCATGGGGAAAAGTTTGGT
ACACCATTAATAGATACATGGTAGTACCAAAAAGCGATCGCTATCCTATT
TCGGGGGTACATAGTTAATAGGACCTATGGTATACATAAAAACTATCTAT
TTACCTGTTTTTACTATTACGGGGGTCCATAGTAAATAGGACCAAATATT
CTCAGGAAAAATAGCGAAATATATAGGATTTTATGTACACCATAGGTCCT
GTTAATTATGGACCCCCGTAATAACGTAATAACAAAATTTGGTCCTGTTA
ACTATGGACCCCCGTAATAGTACCAGGGTACCAGGTCGTGGGTGGCTCCA
GACGGCAAAACAGGAAGGGGATAGCATCGGCAAAACGTTTCTGTGTACTA
TATTTTTTTATTGGGGGGGAAATGTGACGACCACCGCCCCAACGTTGCAG
TTGTCTCTGTTAGGAGTAGGAGCGGTGCTCGGTCTGGAAAGGGATGCGTG
GCCAACGGTCCGATGACTGAGGCAAGCAACTCATGAGTACGCTCCCCCCG
CCCCCCTCCCCGCCCCCCCGGCTCCCGCAGGTGCTACTGTCCCGAGACTC
TATCCTGGAGATGGCTACCTTCCTCTTCGGGCTACTCATCAATGGACAGC
AGCCCCCGACGACGACACGCGGAGGGTCAGGGTCATCCTCCTCGTCACAC
CCTCCCCAACCGTCATCATCGTCATCGTCCTCCGCTGCTGCGGCGGCTGC
GGCGGCCTCGGCTGCTACTGCCGCCGCTGCTGCTGCTGCCGCTGCGGGTG
GTGGTGGTAACCGTAATGGTAGAGGTGGCGGCGGTGGGACTTCAAGCGGC
GCAATTGGTGCCGGTTCATCTGCTGCAGGGCGTAGTGATGGTGGGGGTAG
GAGGGGCCAGGCGCCGCAAACGAGCGCGGGTTCTACATCGGATAGAAGGC
GTTTAGGGTCTGCGTCGAGGGCGTTCAGCGGCGGTGGTGGTCTTGGCTTT
GCAGGACGAGATGCTCATGAGGACCAGGAGGAAGAGGAGGAGGAGGAGGA
GGAGGGGTGGAGGGTGGGTGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGG
AGGATGATGATGGGGGCATGTGGGGGATGGGAGATGGAGGGGAGGAGGAG
TACGAAGAAGAGGAAGATGGAGAGGGCGAGCTTGACGAGGTG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig10395:4706..10047- >mRNA_M-pyrifera_M_contig10395.837.1 ID=mRNA_M-pyrifera_M_contig10395.837.1|Name=mRNA_M-pyrifera_M_contig10395.837.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2094bp|location=Sequence derived from alignment at M-pyrifera_M_contig10395:4706..10047- (Macrocystis pyrifera P11B4 male) GATGTGCCCGACCCCCACCCTACGGTTCTGCTAGACCTTGGCCGGCGGTG CATCGTGTCAGGGCTGCAACGGAAAATATCAAGACAGGATGTGCCCGACC CCCACCCTACGGTTCTGCTAGACCTTGGCCGGCGGTGCATCGTGTCAGGG CTGCAACGGAAAATATCAAGACAGGCGTGCAACCCGCTCGGGCTGTGCGC GGGGTCGCTCCCATCTTGGTGTGCCGGCCTCCCGGAGGAGTTCCCATCCC TGTTTTCTCTGGATGTTCGGCTGTCGCTCTTGAAGAAGACTGCCTTCGGG ATGGCTCGGGGTGTGGCTCATGTCCAGGCAAGAAATTTCGCGTGCAACCC GCTCGGGCTGTGCGCGGGGTCGCTCCCATCTTGGTGTGCCGGCCTCCCGG AGGAGTTCCCATCCCTGTTTTCTCTGGATGTTCGGCTGTCGCTCTTGAAG AAGACTGCCTTCGGGATGGCTCGGGGTGTGGCTCATGTCCAGGCAAGAAA TTTCGAAAAAGCCAAAAAGGTGGAGGAGGACAGCCCCATCACCTTTCTTC TCGGGTCGGGGCTCGAGTCTCTGGGAGTTGCAAGGCGTGGGGGGGCGCTT ACAGCGGGGGCGGGGGGCGCGGGAGGGGCGGAGTCGTTGCCGCTGCACGA AGTTTTGAGGCAGCTGGGCAGGCTCGGACGTCTCACGGAAAAAGCCAAAA AGGTGGAGGAGGACAGCCCCATCACCTTTCTTCTCGGGTCGGGGCTCGAG TCTCTGGGAGTTGCAAGGCGTGGGGGGGCGCTTACAGCGGGGGCGGGGGG CGCGGGAGGGGCGGAGTCGTTGCCGCTGCACGAAGTTTTGAGGCAGCTGG GCAGGCTCGGACGTCTCACGGTGCTACTGTCCCGAGACTCTATCCTGGAG ATGGCTACCTTCCTCTTCGGGCTACTCATCAATGGACAGCAGCCCCCGAC GACGACACGCGGAGGGTCAGGGTCATCCTCCTCGTCACACCCTCCCCAAC CGTCATCATCGTCATCGTCCTCCGCTGCTGCGGCGGCTGCGGCGGCCTCG GCTGCTACTGCCGCCGCTGCTGCTGCTGCCGCTGCGGGTGGTGGTGGTAA CCGTAATGGTAGAGGTGGCGGCGGTGGGACTTCAAGCGGCGCAATTGGTG CCGGTTCATCTGCTGCAGGGCGTAGTGATGGTGGGGGTAGGAGGGGCCAG GCGCCGCAAACGAGCGCGGGTTCTACATCGGATAGAAGGCGTTTAGGGTC TGCGTCGAGGGCGTTCAGCGGCGGTGGTGGTCTTGGCTTTGCAGGACGAG ATGCTCATGAGGACCAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGGGTGG AGGGTGGGTGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGGAGGATGATGA TGGGGGCATGTGGGGGATGGGAGATGGAGGGGAGGAGGAGTACGAAGAAG AGGAAGATGGAGAGGGCGAGCTTGACGAGGTGGTGCTACTGTCCCGAGAC TCTATCCTGGAGATGGCTACCTTCCTCTTCGGGCTACTCATCAATGGACA GCAGCCCCCGACGACGACACGCGGAGGGTCAGGGTCATCCTCCTCGTCAC ACCCTCCCCAACCGTCATCATCGTCATCGTCCTCCGCTGCTGCGGCGGCT GCGGCGGCCTCGGCTGCTACTGCCGCCGCTGCTGCTGCTGCCGCTGCGGG TGGTGGTGGTAACCGTAATGGTAGAGGTGGCGGCGGTGGGACTTCAAGCG GCGCAATTGGTGCCGGTTCATCTGCTGCAGGGCGTAGTGATGGTGGGGGT AGGAGGGGCCAGGCGCCGCAAACGAGCGCGGGTTCTACATCGGATAGAAG GCGTTTAGGGTCTGCGTCGAGGGCGTTCAGCGGCGGTGGTGGTCTTGGCT TTGCAGGACGAGATGCTCATGAGGACCAGGAGGAAGAGGAGGAGGAGGAG GAGGAGGGGTGGAGGGTGGGTGAGGAGGAGGAAGAAGAGGAAGAGGAGGA GGAGGATGATGATGGGGGCATGTGGGGGATGGGAGATGGAGGGGAGGAGG AGTACGAAGAAGAGGAAGATGGAGAGGGCGAGCTTGACGAGGTG back to top
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