prot_M-pyrifera_M_contig100396.83.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig100396.83.1
Unique Nameprot_M-pyrifera_M_contig100396.83.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length166
Homology
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A7S4IC56_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IC56_9EUKA)

HSP 1 Score: 152 bits (384), Expect = 1.970e-42
Identity = 83/174 (47.70%), Postives = 107/174 (61.49%), Query Frame = 0
Query:    1 RCQVELVLDVACKNE---DKLVVTSRDLHSSDPQVVPVEDRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTN-----DTGDLVSIKIRDDVFHFTVE 166
            +C ++L  ++AC      D   VT+ D HSSDP VVPVE   N    I IVK+RKGQEL L   A KG    HAKW PTCCSVF+ EP I L++ ++  L    KQ +V+SCPT VY  DE +G V V+ P  CTYCDECI + R         +  DLV+I+ ++++FHFTVE
Sbjct:  107 KCAIKL--ELACTGTHMGDTTTVTAADFHSSDPDVVPVESYKN----IPIVKMRKGQELTLICIAKKGTAQTHAKWSPTCCSVFRVEPDIELNQAKLQMLDSIGKQEWVNSCPTRVYGYDEVSGNVSVENPDRCTYCDECIKDGRMRIGYGEGGEYDDLVTIRPQENIFHFTVE 274          
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A5J4W8L2_9EUKA (DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4W8L2_9EUKA)

HSP 1 Score: 137 bits (346), Expect = 6.660e-37
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 0
Query:    1 RCQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLV 152
            +C V L LD A  N+D  +V S+DLHS +P+VVPV D+  PD GI+I K+ KGQELRL A A KGIG +HAKW P   +VF  EP + L++  +SEL +E K  FV SCP +V+++D  +G V VD    C +C+EC+  + K+      +V
Sbjct:  102 QCSVILTLD-ASTNDDTCLVYSKDLHSENPEVVPVRDQEFPD-GILITKITKGQELRLKAIAKKGIGKEHAKWIPASTAVFSYEPEVKLNDAILSELDQEQKIAFVKSCPKSVFRIDRVSGAVRVDDFWQCMFCEECVKHSDKIKKSVNGIV 251          
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A2P6N9R0_9EUKA (RNA polymerase II core subunit n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N9R0_9EUKA)

HSP 1 Score: 135 bits (341), Expect = 3.220e-36
Identity = 78/167 (46.71%), Postives = 100/167 (59.88%), Query Frame = 0
Query:    2 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTG--DLVSIKIRDDVFHFTVE 166
            C V   L V C ++ K V TS DL S+D  V PV      D+ IVIVKL KGQEL+LTA A KG+G +HAKWQPTC + FQ +P I +++  +  L EE K  F +SCP  V+  D+ T TV V+   NC YC EC F     +ND G  DLV +  + + + FTVE
Sbjct:   95 CSVRFNLHVTCTDDTKQV-TSDDLFSTDADVRPVH---REDDSIVIVKLAKGQELKLTAIAKKGVGKEHAKWQPTCITTFQYDPDIRINQNIMDRLDEEKKVKFANSCPVKVFAYDKDTRTVSVEAASNCVYCQECKF----YSNDIGHPDLVHVGYKPERYIFTVE 253          
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=RPB3_DICDI)

HSP 1 Score: 135 bits (339), Expect = 8.850e-36
Identity = 75/171 (43.86%), Postives = 102/171 (59.65%), Query Frame = 0
Query:    1 RCQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDR---SNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGT--VFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 166
            +C VEL L+V C       VTS DL S +  V+PV  +   SN +  I IVKLR+GQE++L A A KG+G +HAKW P+C + +Q +P IVL++ RI EL ++ K+ +V SCPT VY       T  V ++ PL C YC EC  +A        DLV ++ + D F FTVE
Sbjct:  100 QCSVELRLNVKCTENRPRDVTSSDLLSQNSAVIPVSSQVTSSNSEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLECKKKAESFGKP--DLVHLEQKQDKFIFTVE 268          
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A176WQD0_MARPO (RPOLD domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WQD0_MARPO)

HSP 1 Score: 133 bits (334), Expect = 7.930e-35
Identity = 82/174 (47.13%), Postives = 102/174 (58.62%), Query Frame = 0
Query:    2 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRSNPD---------NGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 166
            C VE  L+V C ++  L VTS DL SSDP VVPV++    D          GI+IVKLR+GQEL+L A A KGIG  HAKW P     FQ EP I ++E  +  L  E+K+ +VDSCPT V+++D +T  V V      TY DE I +  +    TG LV I  RDD F FTVE
Sbjct:  103 CSVEFTLNVKCTSDQTLDVTSHDLISSDPSVVPVDNNLAQDINGFDAPEARGILIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVAFQFEPEIHINEALMESLSLEEKKEWVDSCPTKVFEVDPQTQQVVVVDAEAYTY-DEEILKKAEAMGKTG-LVDIISRDDSFIFTVE 274          
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: UPI00053C299F (DNA-directed RNA polymerases II, IV and V subunit 3 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C299F)

HSP 1 Score: 129 bits (324), Expect = 2.110e-33
Identity = 77/171 (45.03%), Postives = 99/171 (57.89%), Query Frame = 0
Query:    2 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVED------RSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 166
            C VE  L   C  +  L VTSRDL+S+DP V PV+        SN   GI+IVKLR+GQELRL A A KGIG  HAKW P     F  EP IV++E  +  L +E+K   +DS PT V+  D+ T  + V  P   +Y DE + +A +    TG LV I+ ++D F FTVE
Sbjct:  102 CSVEFRLSAKCIGDQTLDVTSRDLYSADPTVTPVDFSDPSGYESNEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMCEPEIVINEDLMDTLSDEEKLKLIDSSPTKVFDFDQVTRQIVVVDPEAYSY-DEEVLKAAEAMGKTG-LVEIRPKEDSFIFTVE 270          
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A067F124_CITSI (RPOLD domain-containing protein n=7 Tax=rosids TaxID=71275 RepID=A0A067F124_CITSI)

HSP 1 Score: 128 bits (322), Expect = 4.270e-33
Identity = 77/172 (44.77%), Postives = 99/172 (57.56%), Query Frame = 0
Query:    2 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVE-------DRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 166
            C VE  L   C ++  L VTS+DL+SSD  VVPV+       D ++   GI+IVKLR+GQELRL A A KGIG  HAKW P     F  EP I ++E  +  L  E+KQ +V+S PT V+ +D  TG V+V      TY DE I +A  +      LV I  ++D F FTVE
Sbjct:  102 CSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKP--GLVEIYAKEDSFIFTVE 271          
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: F0ZT58_DICPU (RNA polymerase II core subunit n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZT58_DICPU)

HSP 1 Score: 128 bits (321), Expect = 4.270e-33
Identity = 71/172 (41.28%), Postives = 106/172 (61.63%), Query Frame = 0
Query:    1 RCQVELVLDVACKNEDKLVVTSRDL---HSSDPQVVPVEDRSNP-DNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNV--YKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 166
            +C VE  L+V C N+  + VTS DL    +++  V+PV  ++    + I IVKLR+GQELRL A A KG+G +HAKW P+C + +Q +P + +++ R+ EL ++ K+ +V SCPT V  Y    ++  V VD+P+ C YC EC  +A        DL+SI+ + D F FTVE
Sbjct:  100 QCSVEFKLNVKCSNQRPIDVTSSDLIVVSNNNNSVIPVSSQTTERTDEIPIVKLRQGQELRLRAIAKKGVGKEHAKWSPSCIATYQFQPIVTINQNRMDELSDKQKEEWVGSCPTKVFGYSPHNQSQPVSVDEPMRCMYCLECKKKAEAFGKP--DLISIEQKQDKFIFTVE 269          
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A161WY68_DAUCS (RPOLD domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161WY68_DAUCS)

HSP 1 Score: 128 bits (322), Expect = 4.450e-33
Identity = 79/169 (46.75%), Postives = 95/169 (56.21%), Query Frame = 0
Query:    2 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPV----EDRSNPDNGIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 166
            C VEL L V C  E  L VTS DL  SD  VVPV       S P  GIVIVKL +GQEL+L A A KGIG  HAKW P     F  EP I ++E  +  L  E+KQ FVDS PT V+++D++T  V +  P    Y DE I +A  +      LV I  ++D F FTVE
Sbjct:  102 CSVELHLSVKCVGEQHLEVTSDDLIPSDHNVVPVGYSGPGDSEPKRGIVIVKLNRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPAIYINENMMDSLTLEEKQGFVDSSPTKVFEIDDKTQQVKIVDPEAYAYDDEVIKKAEAMGKP--GLVEIYAKEDSFIFTVE 268          
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Match: A0A6P6WAQ4_COFAR (DNA-directed RNA polymerases II, IV and V subunit 3-like n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6WAQ4_COFAR)

HSP 1 Score: 128 bits (321), Expect = 6.000e-33
Identity = 81/172 (47.09%), Postives = 100/172 (58.14%), Query Frame = 0
Query:    2 CQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRS------NPDN-GIVIVKLRKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEEDKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGDLVSIKIRDDVFHFTVE 166
            C VE  L   C N+  L VTSR+L SSDP VVPV+  S      N +N GI+IVKLR+GQELRL A A KGIG  HAKW P     F  EP I ++E  + +L  E +   V+S PT V+ +D +TG V V  P   TY DE I +   L N  G LV +  ++D F FTVE
Sbjct:  102 CSVEFHLRAKCLNDQTLDVTSRELISSDPSVVPVDFASPSSEYDNAENRGIMIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIYINEDMMEKLTLEQRMSVVESSPTKVFDIDAKTGRVVVVDPEAYTYDDEVIKKCESL-NAPG-LVEVHPKEDSFIFTVE 271          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100396.83.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IC56_9EUKA1.970e-4247.70Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A5J4W8L2_9EUKA6.660e-3746.71DNA-directed RNA polymerase II subunit RPB3 n=1 Ta... [more]
A0A2P6N9R0_9EUKA3.220e-3646.71RNA polymerase II core subunit n=1 Tax=Planoprotos... [more]
RPB3_DICDI8.850e-3643.86DNA-directed RNA polymerase II subunit rpb3 n=1 Ta... [more]
A0A176WQD0_MARPO7.930e-3547.13RPOLD domain-containing protein n=2 Tax=Marchantia... [more]
UPI00053C299F2.110e-3345.03DNA-directed RNA polymerases II, IV and V subunit ... [more]
A0A067F124_CITSI4.270e-3344.77RPOLD domain-containing protein n=7 Tax=rosids Tax... [more]
F0ZT58_DICPU4.270e-3341.28RNA polymerase II core subunit n=1 Tax=Dictyosteli... [more]
A0A161WY68_DAUCS4.450e-3346.75RPOLD domain-containing protein n=1 Tax=Daucus car... [more]
A0A6P6WAQ4_COFAR6.000e-3347.09DNA-directed RNA polymerases II, IV and V subunit ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 2..74
e-value: 5.9E-16
score: 58.8
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 1..73
e-value: 4.1E-17
score: 65.0
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 2..75
NoneNo IPR availableGENE3D3.30.70.20coord: 93..146
e-value: 5.6E-10
score: 40.4
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 1..166
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 106..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100396contigM-pyrifera_M_contig100396:74..571 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100396.83.1mRNA_M-pyrifera_M_contig100396.83.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig100396 74..571 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig100396.83.1 ID=prot_M-pyrifera_M_contig100396.83.1|Name=mRNA_M-pyrifera_M_contig100396.83.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
RCQVELVLDVACKNEDKLVVTSRDLHSSDPQVVPVEDRSNPDNGIVIVKL
RKGQELRLTATATKGIGMQHAKWQPTCCSVFQQEPTIVLDELRISELPEE
DKQHFVDSCPTNVYKLDERTGTVFVDKPLNCTYCDECIFEARKLTNDTGD
LVSIKIRDDVFHFTVE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011262DNA-dir_RNA_pol_insert
IPR036643RNApol_insert_sf
IPR036603RBP11-like