mRNA_M-pyrifera_M_contig103934.832.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103934.832.1
Unique NamemRNA_M-pyrifera_M_contig103934.832.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: UPI001CF860C6 (UDP-glucose 4-epimerase GalE n=2 Tax=Dechloromonas denitrificans TaxID=281362 RepID=UPI001CF860C6)

HSP 1 Score: 103 bits (258), Expect = 7.260e-25
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   22 NLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRY 228
            NLGTGRGYSV EVVAA EKASG+++A  +  RR GD+AACYAD + ARE LGW+A RD+DTMCAD WR+
Sbjct:  258 NLGTGRGYSVLEVVAAFEKASGQKIAYRIVDRRPGDIAACYADPARAREVLGWSADRDIDTMCADAWRW 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: UPI00191EDB3F (UDP-glucose 4-epimerase GalE n=1 Tax=Piscinibacter sp. HJYY11 TaxID=2801333 RepID=UPI00191EDB3F)

HSP 1 Score: 102 bits (255), Expect = 2.160e-24
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:   22 NLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRYLQR 237
            NLGTGRG+SV EV+ A E+ASGR V   VT RR GDVAACYAD SLAR  LGWTA+R++D MCAD WR+  R
Sbjct:  260 NLGTGRGHSVMEVIRAFERASGRSVPYRVTTRRSGDVAACYADVSLARSLLGWTASRELDQMCADAWRWQSR 331
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BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: A0A0Q6MEW1_9BURK (UDP-glucose 4-epimerase n=3 Tax=unclassified Rhizobacter TaxID=2640088 RepID=A0A0Q6MEW1_9BURK)

HSP 1 Score: 101 bits (252), Expect = 5.510e-24
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:   22 NLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRY 228
            NLGTGRGYSV EVV A E+ASGR V   V  RR GDVAACYAD SLARE LGWTATRD++ MC+D WR+
Sbjct:  260 NLGTGRGYSVLEVVKAFERASGRPVPHRVMPRRAGDVAACYADPSLARELLGWTATRDIEAMCSDAWRW 328
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: A0A3N9NX42_9BACT (UDP-glucose 4-epimerase n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3N9NX42_9BACT)

HSP 1 Score: 101 bits (252), Expect = 5.740e-24
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    7 GWERFNLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRY 228
            G E +NLG GRGYSV+EV+ A EKAS R V   VTKRR GD+A CYAD   A+++LGW ATRD+D MCAD WR+
Sbjct:  255 GAEAYNLGAGRGYSVFEVIRAFEKASERSVPYKVTKRRSGDIAMCYADVHKAQQELGWAATRDIDDMCADAWRW 328
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: A0A257JHC4_9BURK (UDP-glucose 4-epimerase (Fragment) n=1 Tax=Burkholderiales bacterium PBB5 TaxID=2015567 RepID=A0A257JHC4_9BURK)

HSP 1 Score: 95.9 bits (237), Expect = 8.460e-24
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   22 NLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRY 228
            NLGTGRGYSV E+VAA  KASGR +   V  RR GDVAACYAD +LAR+ LGW A  D+D MCAD WR+
Sbjct:   39 NLGTGRGYSVLELVAAYAKASGRPIPYEVVARRPGDVAACYADPALARQTLGWQARHDLDRMCADSWRW 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: UPI001ADF58C1 (UDP-glucose 4-epimerase GalE n=1 Tax=Rhizobacter sp. AJA081-3 TaxID=2753607 RepID=UPI001ADF58C1)

HSP 1 Score: 101 bits (251), Expect = 9.060e-24
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 DGGWERFNLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRY 228
            DG     NLGTGRG+SV EVV A E+ASGRRV  ++  RR GDVAACYAD SLA+  LGW ATRD+D MCAD WR+
Sbjct:  256 DGASLTVNLGTGRGHSVLEVVQAFERASGRRVPYTIMPRRPGDVAACYADPSLAQRLLGWRATRDLDAMCADSWRW 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: A0A1J5PDF7_9ZZZZ (UDP-glucose 4-epimerase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5PDF7_9ZZZZ)

HSP 1 Score: 98.2 bits (243), Expect = 9.430e-24
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   19 FNLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRY 228
            +NLGTGRGYSV E+VAA EKASG+ V   +  RR GD+AACYADA LA  +LGW A RD++ MCAD WR+
Sbjct:  125 YNLGTGRGYSVLEMVAAFEKASGKAVPYRIVDRRPGDIAACYADAGLAERELGWRAQRDIEVMCADSWRW 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: A0A257DBQ8_9BURK (UDP-glucose 4-epimerase n=1 Tax=Burkholderiales bacterium PBB1 TaxID=2015563 RepID=A0A257DBQ8_9BURK)

HSP 1 Score: 100 bits (250), Expect = 1.120e-23
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:   22 NLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRY 228
            NLGTGRGYSV E+V A E+ASGR +   +  RR GDVAACYADAS ARE LGW ATRD+D MCAD WR+
Sbjct:  262 NLGTGRGYSVLELVRAFERASGRPIPYDIVARRPGDVAACYADASRARELLGWQATRDIDAMCADSWRW 330
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: A0A4Q7VZG9_9BURK (UDP-glucose 4-epimerase n=1 Tax=Rivibacter subsaxonicus TaxID=457575 RepID=A0A4Q7VZG9_9BURK)

HSP 1 Score: 100 bits (250), Expect = 1.220e-23
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   22 NLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRY 228
            NLGTGRG+SV EV+ A E+ASGRR+A  V  RR GDVAACYADA LAR++LGW A RD+D MCAD WR+
Sbjct:  260 NLGTGRGHSVLEVLRAYERASGRRIAHHVGPRRPGDVAACYADAELARQRLGWQARRDLDAMCADSWRW 328
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Match: A0A653CVI0_CALMS (UDP-glucose 4-epimerase n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653CVI0_CALMS)

HSP 1 Score: 100 bits (250), Expect = 1.320e-23
Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   10 WERFNLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYADASLAREKLGWTATRDMDTMCADLWRYLQR 237
            W+ +NLGTGRG+SV E+V A E+ASG++VA  ++ RR+GD+A CYADASLA ++L WTATRD+  MC D W + ++
Sbjct:  269 WKAYNLGTGRGFSVLEMVKAFEEASGKKVAYEISTRREGDIAECYADASLANKELNWTATRDIKAMCRDTWNWQKK 344
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103934.832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CF860C67.260e-2569.57UDP-glucose 4-epimerase GalE n=2 Tax=Dechloromonas... [more]
UPI00191EDB3F2.160e-2468.06UDP-glucose 4-epimerase GalE n=1 Tax=Piscinibacter... [more]
A0A0Q6MEW1_9BURK5.510e-2472.46UDP-glucose 4-epimerase n=3 Tax=unclassified Rhizo... [more]
A0A3N9NX42_9BACT5.740e-2463.51UDP-glucose 4-epimerase n=1 Tax=candidate division... [more]
A0A257JHC4_9BURK8.460e-2466.67UDP-glucose 4-epimerase (Fragment) n=1 Tax=Burkhol... [more]
UPI001ADF58C19.060e-2465.79UDP-glucose 4-epimerase GalE n=1 Tax=Rhizobacter s... [more]
A0A1J5PDF7_9ZZZZ9.430e-2464.29UDP-glucose 4-epimerase n=1 Tax=mine drainage meta... [more]
A0A257DBQ8_9BURK1.120e-2369.57UDP-glucose 4-epimerase n=1 Tax=Burkholderiales ba... [more]
A0A4Q7VZG9_9BURK1.220e-2369.57UDP-glucose 4-epimerase n=1 Tax=Rivibacter subsaxo... [more]
A0A653CVI0_CALMS1.320e-2356.58UDP-glucose 4-epimerase n=1 Tax=Callosobruchus mac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103934contigM-pyrifera_M_contig103934:393..647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score102.8
Seed ortholog evalue7.9e-20
Seed eggNOG ortholog9361.ENSDNOP00000008760
Preferred nameGALE
KEGG rclassRC00289
KEGG koko:K01784
KEGG ReactionR00291,R02984
KEGG Pathwayko00052,ko00520,ko01100,map00052,map00520,map01100
KEGG ModuleM00361,M00362,M00632
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003978,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006012,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016854,GO:0016857,GO:0017144,GO:0018130,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019388,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033499,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042803,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0046983,GO:0051186,GO:0051188,GO:0055086,GO:0061615,GO:0061620,GO:0061622,GO:0061623,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.UDP-N-acetylglucosamine 4-epimerase activity
EggNOG OGs38C46@33154,3BFFH@33208,3CTIM@33213,3JFEN@40674,48976@7711,48ZQD@7742,COG1087@1,KOG1371@2759
EC5.1.3.2
COG Functional cat.M
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.9316087-CDS-M-pyrifera_M_contig103934:392..6471622815544.9316087-CDS-M-pyrifera_M_contig103934:392..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103934 393..647 -
1692277457.163195-CDS-M-pyrifera_M_contig103934:392..6471692277457.163195-CDS-M-pyrifera_M_contig103934:392..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103934 393..647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103934.832.1prot_M-pyrifera_M_contig103934.832.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103934 393..647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103934.832.1

>prot_M-pyrifera_M_contig103934.832.1 ID=prot_M-pyrifera_M_contig103934.832.1|Name=mRNA_M-pyrifera_M_contig103934.832.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
DGGWERFNLGTGRGYSVYEVVAAMEKASGRRVALSVTKRRQGDVAACYAD
ASLAREKLGWTATRDMDTMCADLWRYLQRQHSDE*
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mRNA from alignment at M-pyrifera_M_contig103934:393..647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103934.832.1 ID=mRNA_M-pyrifera_M_contig103934.832.1|Name=mRNA_M-pyrifera_M_contig103934.832.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig103934:393..647- (Macrocystis pyrifera P11B4 male)
GATGGCGGCTGGGAGCGCTTCAACCTCGGCACTGGCCGCGGCTATTCAGT
CTACGAGGTGGTGGCCGCCATGGAGAAGGCCAGCGGCCGGCGCGTGGCCC
TGAGCGTCACGAAGCGGCGGCAGGGCGACGTGGCCGCTTGCTACGCCGAC
GCTTCCTTGGCGAGGGAGAAGCTCGGCTGGACGGCTACGCGCGACATGGA
CACCATGTGCGCCGACTTGTGGCGGTATCTGCAGCGGCAGCACAGCGACG
AGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103934:393..647-

>mRNA_M-pyrifera_M_contig103934.832.1 ID=mRNA_M-pyrifera_M_contig103934.832.1|Name=mRNA_M-pyrifera_M_contig103934.832.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig103934:393..647- (Macrocystis pyrifera P11B4 male)
GATGGCGGCTGGGAGCGCTTCAACCTCGGCACTGGCCGCGGCTATTCAGT
CTACGAGGTGGTGGCCGCCATGGAGAAGGCCAGCGGCCGGCGCGTGGCCC
TGAGCGTCACGAAGCGGCGGCAGGGCGACGTGGCCGCTTGCTACGCCGAC
GCTTCCTTGGCGAGGGAGAAGCTCGGCTGGACGGCTACGCGCGACATGGA
CACCATGTGCGCCGACTTGTGGCGGTATCTGCAGCGGCAGCACAGCGACG
AGTAGGATGGCGGCTGGGAGCGCTTCAACCTCGGCACTGGCCGCGGCTAT
TCAGTCTACGAGGTGGTGGCCGCCATGGAGAAGGCCAGCGGCCGGCGCGT
GGCCCTGAGCGTCACGAAGCGGCGGCAGGGCGACGTGGCCGCTTGCTACG
CCGACGCTTCCTTGGCGAGGGAGAAGCTCGGCTGGACGGCTACGCGCGAC
ATGGACACCATGTGCGCCGACTTGTGGCGGTATCTGCAGCGGCAGCACAG
CGACGAGTAG
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