mRNA_M-pyrifera_M_contig103876.828.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103876.828.1
Unique NamemRNA_M-pyrifera_M_contig103876.828.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A0A2E7KHD2_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KHD2_9PLAN)

HSP 1 Score: 142 bits (359), Expect = 1.210e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1
Query:    1 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ
Sbjct:  314 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 382          
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A0A518A269_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A269_9PLAN)

HSP 1 Score: 132 bits (331), Expect = 1.650e-35
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 1
Query:    1 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            LR QSQF+RAL+EIGTGST+TFWVYPDSFELYR+LQK+AHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ
Sbjct:  314 LRVQSQFARALSEIGTGSTLTFWVYPDSFELYRKLQKHAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 382          
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A0A518I829_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I829_9PLAN)

HSP 1 Score: 127 bits (319), Expect = 9.890e-34
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            L+ QSQF RALT+IG+GST+TFWVYPDSFELYR LQK+AHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ
Sbjct:  316 LQIQSQFYRALTDIGSGSTLTFWVYPDSFELYRSLQKHAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 384          
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A6C5F9_9PLAN (Uncharacterized protein n=9 Tax=Planctomycetaceae TaxID=126 RepID=A6C5F9_9PLAN)

HSP 1 Score: 124 bits (310), Expect = 2.000e-32
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 1
Query:    1 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            ++  S+F +ALT+IGTGST+TFWVYPDSFELYR LQK+AHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ
Sbjct:  314 MQNNSEFFQALTDIGTGSTLTFWVYPDSFELYRSLQKHAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 382          
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A0A517W1I9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W1I9_9PLAN)

HSP 1 Score: 124 bits (310), Expect = 2.130e-32
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1
Query:    1 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            L+ QS+F +ALT+IGTGST+TFWVYPDSFELYR LQK+AHSLGYQVAGRPLPFGVPIAGSP GTRSAGQ
Sbjct:  318 LQVQSRFYQALTDIGTGSTLTFWVYPDSFELYRALQKHAHSLGYQVAGRPLPFGVPIAGSPQGTRSAGQ 386          
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A0A2D6SRB0_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SRB0_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 9.820e-24
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            L P S F + L   G+G+T+TFWVYPDSF  YR LQ  AH++GY+VA RPLPFGVPIAGSP+GT+SAGQ
Sbjct:  344 LSPHSTFIKVLQTAGSGATLTFWVYPDSFAAYRRLQSAAHNVGYEVAARPLPFGVPIAGSPSGTKSAGQ 412          
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A0A836RDC1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RDC1_9PLAN)

HSP 1 Score: 91.3 bits (225), Expect = 5.000e-20
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            L P S+FS AL      +T+TFWVYPDSF L+R LQ+ A   G+ VAGRPLPFGVPIAGSP G+RSAGQ
Sbjct:  356 LDPGSRFSTALLLAPPDATLTFWVYPDSFSLFRRLQRAAQERGFTVAGRPLPFGVPIAGSPFGSRSAGQ 424          
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A0A3E0Q1Q1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q1Q1_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 8.190e-20
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   13 SQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            S+F  AL   G  ST+TFW+YPDSF+L++ LQ+YAHS+G+ VA RPLP GVPIAGSP G+RS  Q
Sbjct:  335 SRFREALQLAGASSTLTFWIYPDSFDLHQRLQEYAHSIGFDVAARPLPQGVPIAGSPNGSRSVAQ 399          
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A0A7C4LSN0_9PLAN (Uncharacterized protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4LSN0_9PLAN)

HSP 1 Score: 89.0 bits (219), Expect = 2.590e-19
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            LRP S+F +AL E    +T+TFWVYPDSF  +R+L+ Y H   + VAGRP+P G+PIAGSP GTRS+GQ
Sbjct:  310 LRPGSRFYQALLEADNDTTLTFWVYPDSFAAFRQLKAYCHEQNFLVAGRPMPPGMPIAGSPHGTRSSGQ 378          
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Match: A0A257VYZ7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257VYZ7_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 3.600e-19
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRPLPFGVPIAGSPAGTRSAGQ 207
            L+P S+F  A+     GS +TFWVYPD F  Y EL+ Y   L + +AGRPLP G+PIAGSP+GTRS+GQ
Sbjct:   79 LQPGSRFLTAVAAAEPGSAMTFWVYPDGFTAYGELKAYLQRLNFLIAGRPLPNGIPIAGSPSGTRSSGQ 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103876.828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KHD2_9PLAN1.210e-39100.00Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A518A269_9PLAN1.650e-3591.30Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A518I829_9PLAN9.890e-3488.41Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A6C5F9_9PLAN2.000e-3284.06Uncharacterized protein n=9 Tax=Planctomycetaceae ... [more]
A0A517W1I9_9PLAN2.130e-3285.51Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A2D6SRB0_9PLAN9.820e-2466.67Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A836RDC1_9PLAN5.000e-2065.22Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3E0Q1Q1_9BACT8.190e-2063.08Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C4LSN0_9PLAN2.590e-1959.42Uncharacterized protein n=1 Tax=Schlesneria paludi... [more]
A0A257VYZ7_9BACT3.600e-1956.52Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103876contigM-pyrifera_M_contig103876:3..212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score125.9
Seed ortholog evalue7.2e-27
Seed eggNOG ortholog344747.PM8797T_18219
Hectar predicted targeting categoryother localisation
EggNOG OGs2AIGH@1,2IZKU@203682,318Y7@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.762681-CDS-M-pyrifera_M_contig103876:2..2121622815544.762681-CDS-M-pyrifera_M_contig103876:2..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103876 3..212 +
1692277457.0730176-CDS-M-pyrifera_M_contig103876:2..2121692277457.0730176-CDS-M-pyrifera_M_contig103876:2..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103876 3..212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103876.828.1prot_M-pyrifera_M_contig103876.828.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103876 3..212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103876.828.1

>prot_M-pyrifera_M_contig103876.828.1 ID=prot_M-pyrifera_M_contig103876.828.1|Name=mRNA_M-pyrifera_M_contig103876.828.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
LRPQSQFSRALTEIGTGSTVTFWVYPDSFELYRELQKYAHSLGYQVAGRP
LPFGVPIAGSPAGTRSAGQ*
back to top

mRNA from alignment at M-pyrifera_M_contig103876:3..212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103876.828.1 ID=mRNA_M-pyrifera_M_contig103876.828.1|Name=mRNA_M-pyrifera_M_contig103876.828.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig103876:3..212+ (Macrocystis pyrifera P11B4 male)
TTACGGCCTCAATCACAGTTCTCCCGGGCGTTGACTGAAATCGGGACCGG TTCGACGGTTACCTTCTGGGTTTACCCGGACAGCTTCGAACTCTATCGAG AGCTGCAGAAATATGCCCATTCACTCGGATACCAGGTAGCGGGCAGGCCG CTGCCTTTTGGGGTACCCATTGCGGGGTCACCTGCCGGAACTCGCTCTGC AGGACAGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103876:3..212+

>mRNA_M-pyrifera_M_contig103876.828.1 ID=mRNA_M-pyrifera_M_contig103876.828.1|Name=mRNA_M-pyrifera_M_contig103876.828.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig103876:3..212+ (Macrocystis pyrifera P11B4 male)
TTACGGCCTCAATCACAGTTCTCCCGGGCGTTGACTGAAATCGGGACCGG
TTCGACGGTTACCTTCTGGGTTTACCCGGACAGCTTCGAACTCTATCGAG
AGCTGCAGAAATATGCCCATTCACTCGGATACCAGGTAGCGGGCAGGCCG
CTGCCTTTTGGGGTACCCATTGCGGGGTCACCTGCCGGAACTCGCTCTGC
AGGACAGTAATTACGGCCTCAATCACAGTTCTCCCGGGCGTTGACTGAAA
TCGGGACCGGTTCGACGGTTACCTTCTGGGTTTACCCGGACAGCTTCGAA
CTCTATCGAGAGCTGCAGAAATATGCCCATTCACTCGGATACCAGGTAGC
GGGCAGGCCGCTGCCTTTTGGGGTACCCATTGCGGGGTCACCTGCCGGAA
CTCGCTCTGCAGGACAGTAA
back to top