mRNA_M-pyrifera_M_contig103875.827.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103875.827.1
Unique NamemRNA_M-pyrifera_M_contig103875.827.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: UPI001C98B67C (flagellar FlbD family protein n=1 Tax=Modestobacter marinus TaxID=477641 RepID=UPI001C98B67C)

HSP 1 Score: 56.6 bits (135), Expect = 2.090e-9
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   13 MIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            MI+LTRLN EHF LNADLI+R+E  PDTVLTL+D
Sbjct:    1 MIRLTRLNGEHFVLNADLIQRVEGHPDTVLTLVD 34
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BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: A0A286H063_9ACTN (Flagellar protein FlbD n=1 Tax=Blastococcus sp. DSM 44270 TaxID=1938745 RepID=A0A286H063_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 8.250e-9
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   13 MIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            MI++TRLN EHFALNADLIER+EA PDTV  L+D
Sbjct:    1 MIRVTRLNGEHFALNADLIERVEAHPDTVAFLVD 34
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BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: A0A354XPG8_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A354XPG8_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 1.420e-8
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GVMSMIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            G  ++I+LTRLN E FALN+DLIERIE  PDTVLTL+D
Sbjct:   29 GAGTVIKLTRLNGEKFALNSDLIERIEESPDTVLTLVD 66
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BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: A0A8F4W6C4_9ACTN (Flagellar FlbD family protein n=1 Tax=Modestobacter sp. L9-4 TaxID=2851567 RepID=A0A8F4W6C4_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 2.460e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   13 MIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            MI+LTRLN EHF LNA+LI+R+E  PDTV+TL+D
Sbjct:    1 MIRLTRLNGEHFVLNAELIQRVEGHPDTVITLLD 34
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BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: A0A239EYB7_9ACTN (Flagellar protein FlbD n=1 Tax=Geodermatophilus saharensis TaxID=1137994 RepID=A0A239EYB7_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 2.460e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   13 MIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            MI++TRLN EHFALN DLIER+E  PDTV++L+D
Sbjct:    1 MIRVTRLNGEHFALNPDLIERVEGHPDTVISLVD 34
[Close]
BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: A0A2T0TUS4_9ACTN (Flagellar protein FlbD n=1 Tax=Geodermatophilus tzadiensis TaxID=1137988 RepID=A0A2T0TUS4_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 3.330e-8
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   13 MIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            MI++TRLN EHFALN DLIER+E  PDTVL L+D
Sbjct:    1 MIRVTRLNGEHFALNPDLIERVEGHPDTVLFLVD 34
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BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: UPI00110D0766 (flagellar FlbD family protein n=2 Tax=Modestobacter TaxID=88138 RepID=UPI00110D0766)

HSP 1 Score: 53.5 bits (127), Expect = 3.410e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   13 MIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            MI+LTRLN EHF LNA+L++R+E  PDTV+TL+D
Sbjct:    1 MIRLTRLNGEHFVLNAELVQRVEGHPDTVITLLD 34
[Close]
BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: A0A317QE95_9ACTN (Flagellar protein FlbD n=2 Tax=Geodermatophilus TaxID=1860 RepID=A0A317QE95_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.010e-7
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   13 MIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            MI++TRLN EHFALN DLIER+E  PDTV+ L+D
Sbjct:    1 MIRVTRLNGEHFALNPDLIERVEGHPDTVVFLVD 34
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BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: A0A1I7A1J4_9ACTN (Flagellar protein FlbD n=3 Tax=Geodermatophilus TaxID=1860 RepID=A0A1I7A1J4_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.060e-7
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   13 MIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            MI++TRLN EHFALN DLIER+E  PDTV+ L+D
Sbjct:    1 MIRVTRLNGEHFALNPDLIERVEGHPDTVVFLVD 34
[Close]
BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Match: A0A1M5EAT0_9ACTN (Flagellar protein FlbD n=5 Tax=Geodermatophilus TaxID=1860 RepID=A0A1M5EAT0_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.130e-7
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   13 MIQLTRLNNEHFALNADLIERIEAMPDTVLTLID 114
            MI++TRLN EHFALN DLIER+E  PDTV+ L+D
Sbjct:    1 MIRVTRLNGEHFALNPDLIERVEGHPDTVVFLVD 34
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103875.827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C98B67C2.090e-976.47flagellar FlbD family protein n=1 Tax=Modestobacte... [more]
A0A286H063_9ACTN8.250e-976.47Flagellar protein FlbD n=1 Tax=Blastococcus sp. DS... [more]
A0A354XPG8_9ACTN1.420e-871.05Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A8F4W6C4_9ACTN2.460e-870.59Flagellar FlbD family protein n=1 Tax=Modestobacte... [more]
A0A239EYB7_9ACTN2.460e-870.59Flagellar protein FlbD n=1 Tax=Geodermatophilus sa... [more]
A0A2T0TUS4_9ACTN3.330e-873.53Flagellar protein FlbD n=1 Tax=Geodermatophilus tz... [more]
UPI00110D07663.410e-867.65flagellar FlbD family protein n=2 Tax=Modestobacte... [more]
A0A317QE95_9ACTN1.010e-770.59Flagellar protein FlbD n=2 Tax=Geodermatophilus Ta... [more]
A0A1I7A1J4_9ACTN1.060e-770.59Flagellar protein FlbD n=3 Tax=Geodermatophilus Ta... [more]
A0A1M5EAT0_9ACTN1.130e-770.59Flagellar protein FlbD n=5 Tax=Geodermatophilus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103875contigM-pyrifera_M_contig103875:536..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size108
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.7135978-UTR-M-pyrifera_M_contig103875:535..5411622815544.7135978-UTR-M-pyrifera_M_contig103875:535..541Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103875 536..541 +
1692277457.0548573-UTR-M-pyrifera_M_contig103875:535..5411692277457.0548573-UTR-M-pyrifera_M_contig103875:535..541Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103875 536..541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.725905-CDS-M-pyrifera_M_contig103875:541..6491622815544.725905-CDS-M-pyrifera_M_contig103875:541..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103875 542..649 +
1692277457.0649605-CDS-M-pyrifera_M_contig103875:541..6491692277457.0649605-CDS-M-pyrifera_M_contig103875:541..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103875 542..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103875.827.1prot_M-pyrifera_M_contig103875.827.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103875 542..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103875.827.1

>prot_M-pyrifera_M_contig103875.827.1 ID=prot_M-pyrifera_M_contig103875.827.1|Name=mRNA_M-pyrifera_M_contig103875.827.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
MSMIQLTRLNNEHFALNADLIERIEAMPDTVLTLID
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mRNA from alignment at M-pyrifera_M_contig103875:536..649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103875.827.1 ID=mRNA_M-pyrifera_M_contig103875.827.1|Name=mRNA_M-pyrifera_M_contig103875.827.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig103875:536..649+ (Macrocystis pyrifera P11B4 male)
GGAGTGATGTCGATGATTCAACTGACGAGGTTGAACAACGAGCACTTCGC
GCTCAATGCCGACCTGATCGAACGAATCGAGGCGATGCCCGACACGGTGC
TCACACTCATCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103875:536..649+

>mRNA_M-pyrifera_M_contig103875.827.1 ID=mRNA_M-pyrifera_M_contig103875.827.1|Name=mRNA_M-pyrifera_M_contig103875.827.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig103875:536..649+ (Macrocystis pyrifera P11B4 male)
ATGTCGATGATTCAACTGACGAGGTTGAACAACGAGCACTTCGCGCTCAA
TGCCGACCTGATCGAACGAATCGAGGCGATGCCCGACACGGTGCTCACAC
TCATCGACATGTCGATGATTCAACTGACGAGGTTGAACAACGAGCACTTC
GCGCTCAATGCCGACCTGATCGAACGAATCGAGGCGATGCCCGACACGGT
GCTCACACTCATCGAC
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