mRNA_M-pyrifera_M_contig103844.820.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103844.820.1
Unique NamemRNA_M-pyrifera_M_contig103844.820.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A9V9J8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9J8_MONBE)

HSP 1 Score: 97.1 bits (240), Expect = 2.050e-22
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   10 IAEEENTEDSTNVEDLLEDGACELCERHIPLTKHHVYPRQRHTRLKKLGLKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKWIPYIRKRKCTSRR 339
            + E+ + +D     +  E G CELC R++PLT+HH+YPR  H +L K   K + L+   ++CR+CHSAVH  + NAELAA++HS ELLL    VQ+W+ Y  K K  SR+
Sbjct:  106 VVEDVSLDDVMPAPEAEELGVCELCARNVPLTRHHLYPRCMHGKLVKTMDKAE-LNQVALLCRSCHSAVHRLHGNAELAASYHSVELLLADEAVQRWVLYASKLKKQSRQ 214          
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A0A7S4C8S4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8S4_9EUGL)

HSP 1 Score: 92.0 bits (227), Expect = 6.240e-21
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 1
Query:   49 EDLLEDGACELCERHIPLTKHHVYPRQRHTRLKKLG-LKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKWIPYIRKRKCTSRRNVVAH 354
            +D LE G C +CER +PLT HH+ P+Q H+ L K G   +D +  GI ICR CHSA+HS + N  LAA +++ E LLE  ++Q++I ++ K++  S+++   H
Sbjct:   79 DDDLEPGCCAMCERPMPLTFHHLIPKQTHSDLLKKGTFSKDKICRGIWICRPCHSAIHSLHDNKTLAAQYNTLEALLELEQIQRFIKWVSKQRVRSKKDGQLH 181          
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A0A137P1V4_CONC2 (Uncharacterized protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P1V4_CONC2)

HSP 1 Score: 92.4 bits (228), Expect = 6.980e-21
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   67 GACELCERHIPLTKHHVYPRQRHTRLKKLGL--KRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKWIPYIRKRKCTSR 336
            G+CELCER +PLT HH+ PR+ H+ L K G   K D+   G  ICR CH+ +H  Y N ELA N+++ E LLES KV K+I YI K+K  SR
Sbjct:  102 GSCELCEREMPLTFHHLIPRETHSHLAKKGTFTKDDMRTRGTNICRPCHTHLHRTYDNLELAINYNTVEKLLESEKVCKFIEYISKQKIRSR 193          
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A0A2D4BH02_PYTIN (Tudor domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH02_PYTIN)

HSP 1 Score: 94.0 bits (232), Expect = 8.190e-21
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 LDEIAEEENTEDSTNVEDLLEDGA-CELCERHIPLTKHHVYPRQRHTRLKKLGLKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKWIPYIRKRKCTSR 336
            L+++  EE+  D         D A CE+CER + LT HH+ PR  H +  KLG  R+ L+SG+MICR CHS +HS  SN  LA  +++ E L+  P++ +WI Y RK++ +SR
Sbjct:  158 LEDVVLEEDIADGEGDSVSAHDAAVCEMCERPMRLTFHHLIPRVTHAKFLKLGYSREYLNSGVMICRPCHSKIHSTESNKTLAREFNTLEKLVAHPEIARWIHYARKQRVSSR 270          
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A0A150GCJ7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GCJ7_GONPE)

HSP 1 Score: 89.7 bits (221), Expect = 9.940e-20
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   10 IAEEENTEDSTNVEDLLEDGACELCERHIPLTKHHVYPRQRHTRLKKLGLKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKWIPYIRKRKCTSRRNV 345
            +AE E +ED    ++    G C +C R +PLT HH+ PR  H + KK GL  + L++GI ICR CHSA+H  Y N  LAA++++   LL S  +QK++ + RK+K T+  ++
Sbjct:  100 VAELEGSED----DEQANIGGCAMCGRQMPLTFHHLIPRDVHDKYKKKGLGTEQLNAGIDICRPCHSAIHRTYDNKTLAAHYYTLHRLLASEPLQKFVAWARKQKVTTASDI 207          
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A0A2K3DDI0_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DDI0_CHLRE)

HSP 1 Score: 89.4 bits (220), Expect = 1.780e-19
Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   67 GACELCERHIPLTKHHVYPRQRHTRLKKLGLKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKWIPYIRKRKCTSRRNVVAHPTW 363
            G C LC R +PLT HH+ PR  H + K+  L  + L+ G+ +CR CHSA+H  Y N  LAA++ + E LL+S  +QK+I + +K+K T+R ++ A+P +
Sbjct:  127 GGCALCGRQMPLTFHHLIPRDVHAKYKRKALTAEELNRGVDVCRPCHSAIHRTYDNKTLAASYSTLEALLQSEPLQKFIRWAQKQKVTTREDM-ANPNF 224          
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A0A482SQP2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQP2_9ARCH)

HSP 1 Score: 87.8 bits (216), Expect = 1.990e-19
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   19 EENTEDSTNVED--LLEDGACELCERHIPLTKHHVYPRQRHTRLKKLGLKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLL 276
            E+NT+ +TN ED  +LEDG+C++CER + LTKHHV+PR+ H  LKK      VL++ I ICR CHS +H  ++N EL+ ++++ +LLL
Sbjct:   62 EKNTK-NTNEEDGEILEDGSCQICERFLRLTKHHVFPRETHKNLKKKDYDSRVLNTTIAICRMCHSTIHRLFTNEELSESFYTVDLLL 148          
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A0A0G4HK29_9ALVE (Tudor domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HK29_9ALVE)

HSP 1 Score: 89.7 bits (221), Expect = 3.620e-19
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   52 DLLEDGACELCERHIPLTKHHVYPRQRHTRLKKLGLKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKWIPYIRKRKCTSRRNVVAHPT 360
            DL    +CE+CER +PLTKHH+ PR  H R++K G   D L  G+MICR CH  VH     A LA  W + + L   P ++ +I Y RK+K  S+R +  H T
Sbjct:  182 DLSLAASCEMCERVLPLTKHHLIPRTTHPRMRKEGWTTDQLSEGVMICRPCHDMVHRAEDEATLAKEWRTLDALKAHPFLKGYIEYARKQKVKSKR-IPQHST 283          
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A0A485LCB5_9STRA (Aste57867_19067 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCB5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.640e-19
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   31 EDSTNVEDLLEDGA------CELCERHIPLTKHHVYPRQRHTRLKKLGLKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKWIPYIRKRK 324
            E+   +ED+ +D A      CE+CER + LT+HH+ PRQ H +  + G  RD L+  I ICRACHSA+HS   N  LAA +++ E LL   ++ K++ Y RK+K
Sbjct:  153 ENVVRMEDVADDAAASVNDGCEMCERPVRLTEHHLIPRQMHAKYLQRGYTRDFLNRCITICRACHSAIHSAEDNRTLAAEFNTLEKLLAHARIAKYVAYARKQK 256          
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Match: A0A7S1U0G4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0G4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.440e-19
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   58 LEDGACELCERHIPLTKHHVYPRQRHTRLKKLGLKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKWIPYIRKRKCTS 333
            L +G CELCER +PLT HH+ PR+ H + +K GL ++ L++  MICR CHS +H  Y N  LAA   + E LL+   + +++ +  K++ TS
Sbjct:   72 LGEGECELCEREMPLTAHHLMPRETHRKYRKKGLSQEFLNTCTMICRPCHSHIHKTYDNERLAAELSTVEKLLDDDAILRFVKWAAKQRTTS 163          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103844.820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9V9J8_MONBE2.050e-2245.45Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S4C8S4_9EUGL6.240e-2142.72Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A137P1V4_CONC26.980e-2152.17Uncharacterized protein n=1 Tax=Conidiobolus coron... [more]
A0A2D4BH02_PYTIN8.190e-2142.48Tudor domain-containing protein n=1 Tax=Pythium in... [more]
A0A150GCJ7_GONPE9.940e-2041.07Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A2K3DDI0_CHLRE1.780e-1942.42Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A482SQP2_9ARCH1.990e-1948.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A0G4HK29_9ALVE3.620e-1943.69Tudor domain-containing protein n=1 Tax=Chromera v... [more]
A0A485LCB5_9STRA4.640e-1943.27Aste57867_19067 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1U0G4_9STRA6.440e-1942.39Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103844contigM-pyrifera_M_contig103844:18..383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score99.4
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog81824.XP_001749355.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2C6BY@1,2S89B@2759,3A0K1@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.4327114-CDS-M-pyrifera_M_contig103844:17..3831622815544.4327114-CDS-M-pyrifera_M_contig103844:17..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103844 18..383 +
1692277456.9714985-CDS-M-pyrifera_M_contig103844:17..3831692277456.9714985-CDS-M-pyrifera_M_contig103844:17..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103844 18..383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103844.820.1prot_M-pyrifera_M_contig103844.820.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103844 18..383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103844.820.1

>prot_M-pyrifera_M_contig103844.820.1 ID=prot_M-pyrifera_M_contig103844.820.1|Name=mRNA_M-pyrifera_M_contig103844.820.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
LDEIAEEENTEDSTNVEDLLEDGACELCERHIPLTKHHVYPRQRHTRLKK
LGLKRDVLHSGIMICRACHSAVHSFYSNAELAANWHSRELLLESPKVQKW
IPYIRKRKCTSRRNVVAHPTW*
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mRNA from alignment at M-pyrifera_M_contig103844:18..383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103844.820.1 ID=mRNA_M-pyrifera_M_contig103844.820.1|Name=mRNA_M-pyrifera_M_contig103844.820.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig103844:18..383+ (Macrocystis pyrifera P11B4 male)
CTGGATGAGATTGCAGAGGAGGAGAACACAGAGGATTCCACCAATGTGGA GGACCTCCTGGAGGATGGAGCTTGCGAACTCTGTGAGCGACACATTCCTC TCACGAAGCACCATGTCTATCCTCGTCAACGCCACACTCGGCTTAAGAAG CTCGGGCTCAAGAGAGATGTTCTTCATTCTGGTATCATGATCTGTCGAGC TTGTCACAGTGCCGTGCATTCCTTCTACTCCAATGCAGAGCTTGCTGCCA ATTGGCATAGCCGTGAGCTGCTCCTAGAGAGCCCCAAGGTCCAGAAATGG ATTCCTTACATTCGCAAGAGGAAGTGTACTTCTCGCCGCAATGTCGTGGC CCATCCCACATGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103844:18..383+

>mRNA_M-pyrifera_M_contig103844.820.1 ID=mRNA_M-pyrifera_M_contig103844.820.1|Name=mRNA_M-pyrifera_M_contig103844.820.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig103844:18..383+ (Macrocystis pyrifera P11B4 male)
CTGGATGAGATTGCAGAGGAGGAGAACACAGAGGATTCCACCAATGTGGA
GGACCTCCTGGAGGATGGAGCTTGCGAACTCTGTGAGCGACACATTCCTC
TCACGAAGCACCATGTCTATCCTCGTCAACGCCACACTCGGCTTAAGAAG
CTCGGGCTCAAGAGAGATGTTCTTCATTCTGGTATCATGATCTGTCGAGC
TTGTCACAGTGCCGTGCATTCCTTCTACTCCAATGCAGAGCTTGCTGCCA
ATTGGCATAGCCGTGAGCTGCTCCTAGAGAGCCCCAAGGTCCAGAAATGG
ATTCCTTACATTCGCAAGAGGAAGTGTACTTCTCGCCGCAATGTCGTGGC
CCATCCCACATGGTGACTGGATGAGATTGCAGAGGAGGAGAACACAGAGG
ATTCCACCAATGTGGAGGACCTCCTGGAGGATGGAGCTTGCGAACTCTGT
GAGCGACACATTCCTCTCACGAAGCACCATGTCTATCCTCGTCAACGCCA
CACTCGGCTTAAGAAGCTCGGGCTCAAGAGAGATGTTCTTCATTCTGGTA
TCATGATCTGTCGAGCTTGTCACAGTGCCGTGCATTCCTTCTACTCCAAT
GCAGAGCTTGCTGCCAATTGGCATAGCCGTGAGCTGCTCCTAGAGAGCCC
CAAGGTCCAGAAATGGATTCCTTACATTCGCAAGAGGAAGTGTACTTCTC
GCCGCAATGTCGTGGCCCATCCCACATGGTGA
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