mRNA_M-pyrifera_M_contig10376.805.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10376.805.1
Unique NamemRNA_M-pyrifera_M_contig10376.805.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10376.805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10376contigM-pyrifera_M_contig10376:9378..9897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10376.805.1prot_M-pyrifera_M_contig10376.805.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10376 9402..9830 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.8150177-UTR-M-pyrifera_M_contig10376:9377..94011622815543.8150177-UTR-M-pyrifera_M_contig10376:9377..9401Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10376 9378..9401 +
1692277456.7801542-UTR-M-pyrifera_M_contig10376:9377..94011692277456.7801542-UTR-M-pyrifera_M_contig10376:9377..9401Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10376 9378..9401 +
1622815543.8392828-UTR-M-pyrifera_M_contig10376:9830..98971622815543.8392828-UTR-M-pyrifera_M_contig10376:9830..9897Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10376 9831..9897 +
1692277456.8026097-UTR-M-pyrifera_M_contig10376:9830..98971692277456.8026097-UTR-M-pyrifera_M_contig10376:9830..9897Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10376 9831..9897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.8270657-CDS-M-pyrifera_M_contig10376:9401..98301622815543.8270657-CDS-M-pyrifera_M_contig10376:9401..9830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10376 9402..9830 +
1692277456.7942545-CDS-M-pyrifera_M_contig10376:9401..98301692277456.7942545-CDS-M-pyrifera_M_contig10376:9401..9830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10376 9402..9830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10376.805.1

>prot_M-pyrifera_M_contig10376.805.1 ID=prot_M-pyrifera_M_contig10376.805.1|Name=mRNA_M-pyrifera_M_contig10376.805.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MTDVTDRPGRQRAQGQYKTNKNCASFGRKKKSEKTVTTRVFTVLRPALHR
SHTRSVEALLPVLVGRVIYPPTHTHHDQPPASFQPRTIASKTHLPGKTLA
LPHLGQHIHIRVLRCSALQCTAPRSATCVQVNNTIFSLNCDQ*
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mRNA from alignment at M-pyrifera_M_contig10376:9378..9897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10376.805.1 ID=mRNA_M-pyrifera_M_contig10376.805.1|Name=mRNA_M-pyrifera_M_contig10376.805.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=520bp|location=Sequence derived from alignment at M-pyrifera_M_contig10376:9378..9897+ (Macrocystis pyrifera P11B4 male)
ATTCTCTCATCGATCGATCACACGATGACGGACGTCACTGATCGGCCAGG
GAGGCAGCGAGCGCAGGGGCAATACAAAACAAACAAAAATTGCGCCTCTT
TCGGTAGAAAAAAAAAATCGGAAAAAACTGTCACCACGCGTGTTTTCACC
GTCTTACGCCCCGCCCTCCACCGGAGTCACACTCGATCGGTCGAGGCGCT
GCTGCCAGTGCTCGTGGGGAGAGTGATATACCCCCCCACACACACACACC
ACGACCAACCACCGGCATCTTTTCAACCCCGAACCATCGCCTCTAAAACA
CACCTTCCAGGTAAAACACTCGCTCTACCCCACCTTGGACAACACATTCA
TATACGGGTACTACGCTGCAGTGCACTGCAATGCACTGCGCCACGCAGTG
CAACGTGCGTGCAGGTGAACAACACCATATTTAGCCTCAATTGTGACCAG
TGAAAAATAAGTGATCGCTTTCGCTACGTGCTGCGCTGCGTGCCTCCTCC
TCTCTGTGCCATGAGTCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10376:9378..9897+

>mRNA_M-pyrifera_M_contig10376.805.1 ID=mRNA_M-pyrifera_M_contig10376.805.1|Name=mRNA_M-pyrifera_M_contig10376.805.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig10376:9378..9897+ (Macrocystis pyrifera P11B4 male)
ATGACGGACGTCACTGATCGGCCAGGGAGGCAGCGAGCGCAGGGGCAATA
CAAAACAAACAAAAATTGCGCCTCTTTCGGTAGAAAAAAAAAATCGGAAA
AAACTGTCACCACGCGTGTTTTCACCGTCTTACGCCCCGCCCTCCACCGG
AGTCACACTCGATCGGTCGAGGCGCTGCTGCCAGTGCTCGTGGGGAGAGT
GATATACCCCCCCACACACACACACCACGACCAACCACCGGCATCTTTTC
AACCCCGAACCATCGCCTCTAAAACACACCTTCCAGGTAAAACACTCGCT
CTACCCCACCTTGGACAACACATTCATATACGGGTACTACGCTGCAGTGC
ACTGCAATGCACTGCGCCACGCAGTGCAACGTGCGTGCAGGTGAACAACA
CCATATTTAGCCTCAATTGTGACCAGTGAATGACGGACGTCACTGATCGG
CCAGGGAGGCAGCGAGCGCAGGGGCAATACAAAACAAACAAAAATTGCGC
CTCTTTCGGTAGAAAAAAAAAATCGGAAAAAACTGTCACCACGCGTGTTT
TCACCGTCTTACGCCCCGCCCTCCACCGGAGTCACACTCGATCGGTCGAG
GCGCTGCTGCCAGTGCTCGTGGGGAGAGTGATATACCCCCCCACACACAC
ACACCACGACCAACCACCGGCATCTTTTCAACCCCGAACCATCGCCTCTA
AAACACACCTTCCAGGTAAAACACTCGCTCTACCCCACCTTGGACAACAC
ATTCATATACGGGTACTACGCTGCAGTGCACTGCAATGCACTGCGCCACG
CAGTGCAACGTGCGTGCAGGTGAACAACACCATATTTAGCCTCAATTGTG
ACCAGTGA
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