mRNA_M-pyrifera_M_contig100387.80.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100387.80.1
Unique NamemRNA_M-pyrifera_M_contig100387.80.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100387.80.1 vs. uniprot
Match: A0A6H5KPM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPM5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.340e-13
Identity = 53/119 (44.54%), Postives = 62/119 (52.10%), Query Frame = 1 
Query:    1 RRLLDALWVSAKRGSETLPLSVTDGRELLTGLVAA-----------------------DHNKRPGVDLGIPLPR-----TSTNASSS------------KKPLRPVLGGASGPFARAAR 237
            RRLLDALW+SAKRGS+T  LSV DGR LL+GL+                              P VDLGIPLPR     T+  A+ +            +K +RPVL GASGPFARAAR
Sbjct:  695 RRLLDALWMSAKRGSDTFQLSVVDGRALLSGLLVGLAPPPPFEINPATGKAXXXXXXXXXXPSPLVDLGIPLPRALAALTAARAAGTAAKQFGSTPGLHQKAMRPVLVGASGPFARAAR 813
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BLAST of mRNA_M-pyrifera_M_contig100387.80.1 vs. uniprot
Match: D8LQR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR7_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.670e-11
Identity = 53/142 (37.32%), Postives = 65/142 (45.77%), Query Frame = 1 
Query:    1 RRLLDALWVSAKRGSETLPLSVTDGRELLTGLVAA-----------------------DHNKRPGVDLGIPLPR----------------------------TSTNASSS------------KKPLRPVLGGASGPFARAAR 237
            RRLLDALW+SAKRGS+TL LSV DGR LL+GL+                         + +  P VDLGIPLPR                            T+  A+ +            +K +RP+L GASGPFARAAR
Sbjct:  612 RRLLDALWMSAKRGSDTLQLSVVDGRALLSGLLMGLAPPPPLEIDPATGKAQEKEXXEELSPSPLVDLGIPLPRGVSTDFSYAVRLGVYARISNLPQALAALTAARAAGTAAKQFGSTPGLHQKAMRPILVGASGPFARAAR 753
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100387.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPM5_9PHAE1.340e-1344.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQR7_ECTSI3.670e-1137.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100387contigM-pyrifera_M_contig100387:196..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815499.8765364-CDS-M-pyrifera_M_contig100387:195..4321622815499.8765364-CDS-M-pyrifera_M_contig100387:195..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100387 196..432 +
1692277439.342306-CDS-M-pyrifera_M_contig100387:195..4321692277439.342306-CDS-M-pyrifera_M_contig100387:195..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100387 196..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100387.80.1prot_M-pyrifera_M_contig100387.80.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100387 196..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100387.80.1

>prot_M-pyrifera_M_contig100387.80.1 ID=prot_M-pyrifera_M_contig100387.80.1|Name=mRNA_M-pyrifera_M_contig100387.80.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
RRLLDALWVSAKRGSETLPLSVTDGRELLTGLVAADHNKRPGVDLGIPLP
RTSTNASSSKKPLRPVLGGASGPFARAAR
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mRNA from alignment at M-pyrifera_M_contig100387:196..432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100387.80.1 ID=mRNA_M-pyrifera_M_contig100387.80.1|Name=mRNA_M-pyrifera_M_contig100387.80.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig100387:196..432+ (Macrocystis pyrifera P11B4 male)
AGGCGTCTCCTTGATGCTCTCTGGGTGTCTGCCAAGCGGGGCTCGGAAAC
CCTTCCTCTGTCGGTTACAGACGGCCGAGAGCTTCTGACCGGGCTCGTGG
CAGCCGACCACAACAAGAGACCGGGGGTAGATCTCGGCATTCCCCTACCT
AGAACATCGACGAACGCCTCGAGCAGTAAGAAACCCCTTCGACCCGTCCT
TGGCGGAGCTAGCGGGCCCTTCGCGAGGGCGGCCAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100387:196..432+

>mRNA_M-pyrifera_M_contig100387.80.1 ID=mRNA_M-pyrifera_M_contig100387.80.1|Name=mRNA_M-pyrifera_M_contig100387.80.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig100387:196..432+ (Macrocystis pyrifera P11B4 male)
AGGCGTCTCCTTGATGCTCTCTGGGTGTCTGCCAAGCGGGGCTCGGAAAC
CCTTCCTCTGTCGGTTACAGACGGCCGAGAGCTTCTGACCGGGCTCGTGG
CAGCCGACCACAACAAGAGACCGGGGGTAGATCTCGGCATTCCCCTACCT
AGAACATCGACGAACGCCTCGAGCAGTAAGAAACCCCTTCGACCCGTCCT
TGGCGGAGCTAGCGGGCCCTTCGCGAGGGCGGCCAGGAGGCGTCTCCTTG
ATGCTCTCTGGGTGTCTGCCAAGCGGGGCTCGGAAACCCTTCCTCTGTCG
GTTACAGACGGCCGAGAGCTTCTGACCGGGCTCGTGGCAGCCGACCACAA
CAAGAGACCGGGGGTAGATCTCGGCATTCCCCTACCTAGAACATCGACGA
ACGCCTCGAGCAGTAAGAAACCCCTTCGACCCGTCCTTGGCGGAGCTAGC
GGGCCCTTCGCGAGGGCGGCCAGG
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