mRNA_M-pyrifera_M_contig100334.77.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100334.77.1
Unique NamemRNA_M-pyrifera_M_contig100334.77.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100334.77.1 vs. uniprot
Match: A0A7C1WJD7_9BACT (PpiC domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1WJD7_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 5.460e-15
Identity = 52/146 (35.62%), Postives = 80/146 (54.79%), Query Frame = 1 
Query:    1 GGKPDADRPDVLAVVAGAPITTEDFLARLMHRESRAVFDTLDRQVSAHLALLEAQRLGVQIDPAVVDAEVAASVESMTAAVEGAGFEL--ERYLAEQLGLDPERYFQILRDEVMEQLLTERVMRAWILGQPWVVLRVIVTEQEDAA 432
            GGKP       L  VAG PI  ED L       S+ VF  +++ VS  LAL EAQRLG+++DP  V+ EV  + +++ A +  +  +L  E ++  +LG+  + YF+ LR   + ++LTER +R + L   W  +R+IV      A
Sbjct:   61 GGKP-------LGWVAGMPIRAEDLLLTWHQDASQEVFLVVEKVVSTRLALAEAQRLGMRLDPEEVELEVTRARQAIAAELAASDLDLTLEEFVESRLGMRSDVYFERLRLATIRRMLTERAVRCFTLANDWARVRMIVVATRGEA 199
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BLAST of mRNA_M-pyrifera_M_contig100334.77.1 vs. uniprot
Match: A0A521KZK8_9BACT (PpiC domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KZK8_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 1.700e-14
Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = 1 
Query:   34 LAVVAGAPITTEDFLARLMHRESRAVFDTLDRQVSAHLALLEAQRLGVQIDPAVVDAEVAASVESMTAAVEGAGFEL--ERYLAEQLGLDPERYFQILRDEVMEQLLTERVMRAWILGQPWVVLRVIVTEQEDAA 432
            +A V GA I   + L   MH ES A+ + +DR V+  +A  EA+RLGV+I    VDA    +   + A V+  GF    + Y+ E+LGL+P+RYF+ +R++  +QL  ER +R W+       L VIV    DAA
Sbjct:   70 IARVGGASIDASELLGMWMHSESGALGEYVDRLVNTRIARDEARRLGVRIGADEVDARYQTARAELDALVKKQGFPAGADAYVRERLGLEPQRYFERVREQCEDQLRAERAVRTWLHSSERAALHVIVVA--DAA 202
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BLAST of mRNA_M-pyrifera_M_contig100334.77.1 vs. uniprot
Match: A0A2D5XLH6_9BACT (PpiC domain-containing protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XLH6_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 3.830e-10
Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 1 
Query:   31 VLAVVAGAPITTEDFLARLMHRESRAVFDTLDRQVSAHLALLEAQRLGVQIDPAVVDAEVAASVESMTAAVEGAG-FELERYLAEQLGLDPERYFQILRDEVMEQLLTERVMRAWILGQPWVVLRVIVTEQEDA 429
            V+A VAG+ ++  D +   M R+S AV  T+D  +   + + EA R+G+      V A+V     ++   V  AG  ++  +L++++GLDPERY   +    +  LL ER +R++ LG+    + +I+  + +A
Sbjct:   24 VVARVAGSEVSASDLILAWMQRDSMAVRRTMDELILDRIVIAEAARMGIDPGQEKVQAQVKRVRSALEEEVRRAGSVDVHEFLSQRMGLDPERYLMAVDHSALTDLLAERCVRSYTLGEERCEVALILCGEREA 157
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BLAST of mRNA_M-pyrifera_M_contig100334.77.1 vs. uniprot
Match: A0A7Y5UUU3_9PLAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5UUU3_9PLAN)

HSP 1 Score: 60.8 bits (146), Expect = 3.190e-8
Identity = 38/118 (32.20%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:   31 VLAVVAGAPITTEDFLARLMHRESRAVFDTLDRQVSAHLALLEAQRLGVQIDPAVVDAEVAASVESMTAAVEGAGFEL--ERYLAEQLGLDPERYFQILRDEVMEQLLTERVMRAWIL 378
            +L  V    + +  FL +L   ++R     +++ V A LA LEA RLG+++  A V+AE+  +   +   +E  G +L    ++ + +G++PE Y   LRDE + Q+L ER +RA++L
Sbjct:   16 LLGHVGDRALDSVTFLRKLWVADNRLARRVVEQMVFAELATLEADRLGIKLVEAAVEAELTRAQNELARKLESKGSKLTLREHIDQVIGVEPELYLADLRDETIVQMLAERCVRAYML 133
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BLAST of mRNA_M-pyrifera_M_contig100334.77.1 vs. uniprot
Match: A0A2D5AS57_9BACT (PpiC domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AS57_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 7.600e-8
Identity = 45/134 (33.58%), Postives = 66/134 (49.25%), Query Frame = 1 
Query:   31 VLAVVAGAPITTEDFLARLMHRESRAVFDTLDRQVSAHLALLEAQRLGVQIDPAVVDAEVAASVESMTAAV--EGAGFELERYLAEQLGLDPERYFQILRDEVMEQLLTERVMRAWILGQPWVVLRVIVTEQED 426
            VL  VAG+PIT ED L       SR ++   +R V++ LAL EAQRL +++DP  V+  V +    + A +   G   E E +               LR   ++QLL ER +RA  L    V  R+IV  +++
Sbjct:   75 VLGNVAGSPITAEDLLLEWNDISSRELWLVAERFVTSRLALAEAQRLQIRLDPVDVERRVESEQRELRAEIVRRGLDIEPEDFXXXXXXXXXXXXXXXLRRATIQQLLAERAVRAGSLSTKSVKARLIVVPEQE 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100334.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7C1WJD7_9BACT5.460e-1535.62PpiC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A521KZK8_9BACT1.700e-1438.52PpiC domain-containing protein n=1 Tax=Planctomyce... [more]
A0A2D5XLH6_9BACT3.830e-1029.85PpiC domain-containing protein n=2 Tax=Planctomyce... [more]
A0A7Y5UUU3_9PLAN3.190e-832.20Peptidyl-prolyl cis-trans isomerase n=1 Tax=Planct... [more]
A0A2D5AS57_9BACT7.600e-833.58PpiC domain-containing protein n=1 Tax=Planctomyce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100334contigM-pyrifera_M_contig100334:4..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815499.1645648-CDS-M-pyrifera_M_contig100334:3..4351622815499.1645648-CDS-M-pyrifera_M_contig100334:3..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100334 4..435 -
1692277439.2694728-CDS-M-pyrifera_M_contig100334:3..4351692277439.2694728-CDS-M-pyrifera_M_contig100334:3..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100334 4..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100334.77.1prot_M-pyrifera_M_contig100334.77.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100334 4..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100334.77.1

>prot_M-pyrifera_M_contig100334.77.1 ID=prot_M-pyrifera_M_contig100334.77.1|Name=mRNA_M-pyrifera_M_contig100334.77.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
GGKPDADRPDVLAVVAGAPITTEDFLARLMHRESRAVFDTLDRQVSAHLA
LLEAQRLGVQIDPAVVDAEVAASVESMTAAVEGAGFELERYLAEQLGLDP
ERYFQILRDEVMEQLLTERVMRAWILGQPWVVLRVIVTEQEDAA
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mRNA from alignment at M-pyrifera_M_contig100334:4..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100334.77.1 ID=mRNA_M-pyrifera_M_contig100334.77.1|Name=mRNA_M-pyrifera_M_contig100334.77.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig100334:4..435- (Macrocystis pyrifera P11B4 male)
GGTGGCAAGCCCGACGCGGACCGCCCGGACGTGCTGGCGGTGGTGGCCGG
CGCGCCGATCACGACCGAGGACTTCCTCGCGCGGCTGATGCACCGCGAGT
CGCGGGCCGTCTTCGACACGCTCGACCGCCAGGTCAGCGCGCACCTCGCG
CTGCTCGAGGCCCAGCGCCTGGGCGTGCAGATCGACCCGGCCGTCGTCGA
CGCCGAGGTCGCGGCGAGCGTCGAGTCGATGACCGCCGCCGTCGAGGGCG
CCGGCTTCGAGCTCGAGCGCTACCTCGCCGAGCAGCTCGGCCTGGACCCC
GAGCGCTACTTCCAGATCCTGCGCGACGAGGTCATGGAGCAGCTCTTGAC
CGAGCGCGTCATGCGCGCGTGGATCCTCGGGCAGCCGTGGGTCGTGCTGC
GGGTGATCGTGACCGAGCAGGAGGACGCAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100334:4..435-

>mRNA_M-pyrifera_M_contig100334.77.1 ID=mRNA_M-pyrifera_M_contig100334.77.1|Name=mRNA_M-pyrifera_M_contig100334.77.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig100334:4..435- (Macrocystis pyrifera P11B4 male)
GGTGGCAAGCCCGACGCGGACCGCCCGGACGTGCTGGCGGTGGTGGCCGG
CGCGCCGATCACGACCGAGGACTTCCTCGCGCGGCTGATGCACCGCGAGT
CGCGGGCCGTCTTCGACACGCTCGACCGCCAGGTCAGCGCGCACCTCGCG
CTGCTCGAGGCCCAGCGCCTGGGCGTGCAGATCGACCCGGCCGTCGTCGA
CGCCGAGGTCGCGGCGAGCGTCGAGTCGATGACCGCCGCCGTCGAGGGCG
CCGGCTTCGAGCTCGAGCGCTACCTCGCCGAGCAGCTCGGCCTGGACCCC
GAGCGCTACTTCCAGATCCTGCGCGACGAGGTCATGGAGCAGCTCTTGAC
CGAGCGCGTCATGCGCGCGTGGATCCTCGGGCAGCCGTGGGTCGTGCTGC
GGGTGATCGTGACCGAGCAGGAGGACGCAGCGGGTGGCAAGCCCGACGCG
GACCGCCCGGACGTGCTGGCGGTGGTGGCCGGCGCGCCGATCACGACCGA
GGACTTCCTCGCGCGGCTGATGCACCGCGAGTCGCGGGCCGTCTTCGACA
CGCTCGACCGCCAGGTCAGCGCGCACCTCGCGCTGCTCGAGGCCCAGCGC
CTGGGCGTGCAGATCGACCCGGCCGTCGTCGACGCCGAGGTCGCGGCGAG
CGTCGAGTCGATGACCGCCGCCGTCGAGGGCGCCGGCTTCGAGCTCGAGC
GCTACCTCGCCGAGCAGCTCGGCCTGGACCCCGAGCGCTACTTCCAGATC
CTGCGCGACGAGGTCATGGAGCAGCTCTTGACCGAGCGCGTCATGCGCGC
GTGGATCCTCGGGCAGCCGTGGGTCGTGCTGCGGGTGATCGTGACCGAGC
AGGAGGACGCAGCG
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