mRNA_M-pyrifera_M_contig103614.770.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103614.770.1
Unique NamemRNA_M-pyrifera_M_contig103614.770.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: B0EJA8_ENTDS (Rhomboid-like protein n=8 Tax=Entamoeba TaxID=5758 RepID=B0EJA8_ENTDS)

HSP 1 Score: 142 bits (359), Expect = 6.860e-39
Identity = 69/138 (50.00%), Postives = 91/138 (65.94%), Query Frame = 1
Query:    1 ILMFIVSLSLDGFAPVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSACLQPNSISVAASASLMGVMGGYLAQLNVTWQKLEGTV 414
            I+M IV +SLDGF   S NW+LGPTS A+ ++GAK+ Y IK   Q+WR +TP FLH G+I +  NL  QLR+G+ +ER W  +RF V+YFVSG  G C S   QP SI V AS SL+G+ GG++  + +   K E  V
Sbjct:  106 IIMLIVEISLDGFEKPSINWMLGPTSKAMNTLGAKNDYEIKCNYQLWRLITPIFLHGGIIHLICNLTMQLRLGMIIERRWNSFRFLVVYFVSGIIGNCFSIICQPTSIGVGASGSLLGIFGGFVIDIIINKNKFENRV 243          
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: A0A7S4HHI5_9EUKA (Rhomboid-like protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HHI5_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 1.600e-36
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    7 MFIVSLSLDGFAPVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLS 300
            MF VSL L+GF    ENWLLGP +D+LV +GAK   L+K   ++WRY+TP FL+AG+IQ+  NLF   RMGLYLER W WY FTV+YFVSGTAG+  S
Sbjct:    1 MFGVSLGLEGFEDPKENWLLGPPADSLVELGAKQGSLMKYRYEMWRYITPIFLNAGIIQLLINLFGHFRMGLYLERKWKWYVFTVIYFVSGTAGIAFS 98          
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: A0A0A1UF48_ENTIV (Rhomboid-like protein n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1UF48_ENTIV)

HSP 1 Score: 124 bits (311), Expect = 9.070e-32
Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    7 MFIVSLSLDGFAPVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSACLQPNSISVAASASLMGVMGGYLAQL 381
            M IV +SL GF   S NW+LGPTSDA+  +GAKD+  +KE+ ++WR +TP FLHAG+I +  NL  QLR+G+ +ER     RF ++YFV G  G C S  + P +  V AS +L+ V GG+L  +
Sbjct:  113 MLIVEISLQGFEKPSINWMLGPTSDAMDILGAKDAKKMKEQYELWRLITPIFLHAGIIHLVCNLSMQLRLGMIIERRMNTLRFLIVYFVGGIIGNCFSVMIFPTTQGVGASGALLAVFGGFLIDI 237          
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: A0A7S0ES09_9CRYP (Rhomboid-like protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ES09_9CRYP)

HSP 1 Score: 112 bits (279), Expect = 7.300e-27
Identity = 57/135 (42.22%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    1 ILMFIVSLSLDGFAPVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSACLQPNSISVAASASLMGVMGGYLAQLNVTWQKLE 405
            I++F+V++S+ GF   S N ++GP+S+A + +GAK +  I    Q WR V P FLHAG++ I  N++AQ+ +G   E +WG     V+YFVSG AG  +SA   P  +SV AS +++GV+G  +AQ+  TWQ+ +
Sbjct:  141 IVVFVVTISIYGFTSPSNNNMIGPSSEAFLELGAKYTPYILNG-QAWRLVVPIFLHAGVVHILANMYAQVVVGFSSETSWGSPTIAVIYFVSGLAGNIVSAYFSPAILSVGASGAILGVIGAEVAQMIATWQRTQ 274          
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: A0A7S2XSY5_9STRA (Rhomboid-like protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSY5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.450e-26
Identity = 50/127 (39.37%), Postives = 84/127 (66.14%), Query Frame = 1
Query:   34 GFAPVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSACLQPNSISVAASASLMGVMGGYLAQLNVTWQKLEGTV 414
            G AP++ N +LGP  DAL   GAK+S LI ++ ++WR VTP FLHAG++ +  N+  Q+  G++ ER WG  +F ++YF SG +   LS C +P+ +SV +S ++MG+ G  L+++ + + + + T+
Sbjct:   92 GIAPININPMLGPYPDALSYWGAKNSVLILDDGEIWRLVTPIFLHAGVLHLVGNIGVQMETGVFFEREWGSLKFLIIYFGSGISSSILSVCAKPDILSVGSSGAVMGLFGAKLSEILLKYWRSQDTI 218          
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: A0A7S0A294_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A294_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.370e-23
Identity = 51/131 (38.93%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   16 VSLSLDGFA--PVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSACLQPNSISVAASASLMGVMGGYLAQLNVTWQKL 402
            VS++ +G++  P+S N ++GP+++ L+ +GAK + LI  E QVWR VTP FLHAGLI   FN+ A   +G  +E   G+   ++++ +S   G  +SA   P  ISV AS  + G++G  LA + + W  L
Sbjct:    1 VSIAFNGWSVEPISTNPMIGPSAETLIQLGAKYTDLIVNENQVWRLVTPMFLHAGLIHYIFNMMALWFVGSAVESIHGFIAVSIIFTISAIGGTLMSAIFLPQYISVGASGGIFGLIGSCLADIVINWNLL 131          
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: A0A7S2N158_9STRA (Rhomboid-like protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N158_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.470e-22
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   16 VSLSLDGFAPVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSACL-QPNSISVAASASLMGVMGGYLAQL 381
            V + L G AP   N ++GP  D L   G +++Y+I E LQ+WR +TPC LH G+I +  N+  QL    + ER WG  R+ V+Y +SG  G  ++ CL  P+ ISV +S +LMG+ G  LA++
Sbjct:  162 VQMLLCGVAPFDVNPMIGPYPDVLSEWGGRNTYMIVERLQIWRLITPCVLHTGVIHLLCNVAVQLETAAFFEREWGSLRWGVLY-LSGVFGCNMAGCLLSPDQISVGSSGALMGIFGAKLAEV 283          
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: B8C9X2_THAPS (Rhomboid-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9X2_THAPS)

HSP 1 Score: 95.5 bits (236), Expect = 2.350e-21
Identity = 48/130 (36.92%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   19 SLSLDG--FAPVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSACLQPNSISVAASASLMGVMGGYLAQLNVTWQKL 402
            +LS++G  F P+S N ++GP+++ L+ +GAK+SYLI +E ++WR V+P  LHAG+I    N+FA   +G  +E+  G++   V + V    G  LSA   P  I+V AS  + G++G  ++ + + W  L
Sbjct:    4 ALSVNGWKFEPLSVNPMIGPSAETLLRLGAKESYLIVQENEIWRLVSPMVLHAGVIHFLLNMFALWYVGKAIEQIHGFFPAVVQFVVPAVGGTILSAIFLPEYITVGASGGIFGLIGACISDIVMNWNLL 133          
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: A0A7S3IH76_9SPIT (Rhomboid-like protease (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IH76_9SPIT)

HSP 1 Score: 92.0 bits (227), Expect = 5.740e-21
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    1 ILMFIVSLSLDGFAPVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSACLQPNSISVAASASLMGVMGGYLAQLNVTWQKL 402
            ++MF++SL L     +     L P   AL ++G KD+  IK+  QVWR++TP FLHA  + +  NL +   +G  LE   G ++   +YF+S   G+  S   QP   SV AS ++ G++G Y+A L + W +L
Sbjct:    6 VIMFVISLWL---YRMQNTEFLAPNPKALATLGWKDARKIKKRGQVWRFITPVFLHASFVHLTLNLLSTTVIGSGLENGLGVWKLFALYFISSFGGVLFSCVFQPMRFSVGASTAIFGLIGYYIAYLCIEWNRL 136          
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Match: A0A1E7EVG0_9STRA (Rhomboid-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVG0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.860e-21
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   61 LLGPTSDALVSMGAKDSYLIKEELQVWRYVTPCFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSAC-LQPNSISVAASASLMGVMGGYLAQLNVTW 393
            ++GP  DA    G K++YL+ E+ Q +R++TP FLH G + +  N+F QL+   YLER WG+     +Y +SG  G CL+A  + PN ISV +S +LMG+ G  +AQ  +TW
Sbjct:    1 MIGPYPDAFSEWGGKNTYLLVEDGQYFRFITPIFLHVGFLHLLVNVFFQLQTCSYLEREWGFLPLICIYLISGF-GSCLAASTIDPNEISVCSSGALMGIFGAKIAQA-ITW 110          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103614.770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B0EJA8_ENTDS6.860e-3950.00Rhomboid-like protein n=8 Tax=Entamoeba TaxID=5758... [more]
A0A7S4HHI5_9EUKA1.600e-3661.22Rhomboid-like protein (Fragment) n=1 Tax=Vannella ... [more]
A0A0A1UF48_ENTIV9.070e-3247.20Rhomboid-like protein n=1 Tax=Entamoeba invadens I... [more]
A0A7S0ES09_9CRYP7.300e-2742.22Rhomboid-like protein n=1 Tax=Hanusia phi TaxID=30... [more]
A0A7S2XSY5_9STRA2.450e-2639.37Rhomboid-like protein n=1 Tax=Attheya septentriona... [more]
A0A7S0A294_9STRA3.370e-2338.93Rhomboid-like protein (Fragment) n=1 Tax=Rhizosole... [more]
A0A7S2N158_9STRA2.470e-2241.46Rhomboid-like protein n=1 Tax=Helicotheca tamesis ... [more]
B8C9X2_THAPS2.350e-2136.92Rhomboid-like protein (Fragment) n=1 Tax=Thalassio... [more]
A0A7S3IH76_9SPIT5.740e-2135.82Rhomboid-like protease (Fragment) n=1 Tax=Strombid... [more]
A0A1E7EVG0_9STRA5.860e-2142.86Rhomboid-like protein n=1 Tax=Fragilariopsis cylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103614contigM-pyrifera_M_contig103614:78..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue1.1e-31
Seed eggNOG ortholog5759.rna_EHI_197460-1
Preferred nameROM1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rhomboid family
EggNOG OGs3X8UF@554915,COG0705@1,KOG2289@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.2343886-CDS-M-pyrifera_M_contig103614:77..4851622815542.2343886-CDS-M-pyrifera_M_contig103614:77..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103614 78..485 -
1692277456.2241588-CDS-M-pyrifera_M_contig103614:77..4851692277456.2241588-CDS-M-pyrifera_M_contig103614:77..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103614 78..485 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.2502422-UTR-M-pyrifera_M_contig103614:485..4911622815542.2502422-UTR-M-pyrifera_M_contig103614:485..491Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103614 486..491 -
1692277456.2376077-UTR-M-pyrifera_M_contig103614:485..4911692277456.2376077-UTR-M-pyrifera_M_contig103614:485..491Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103614 486..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103614.770.1prot_M-pyrifera_M_contig103614.770.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103614 78..485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103614.770.1

>prot_M-pyrifera_M_contig103614.770.1 ID=prot_M-pyrifera_M_contig103614.770.1|Name=mRNA_M-pyrifera_M_contig103614.770.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MFIVSLSLDGFAPVSENWLLGPTSDALVSMGAKDSYLIKEELQVWRYVTP
CFLHAGLIQIAFNLFAQLRMGLYLERTWGWYRFTVMYFVSGTAGMCLSAC
LQPNSISVAASASLMGVMGGYLAQLNVTWQKLEGTV
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mRNA from alignment at M-pyrifera_M_contig103614:78..491-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103614.770.1 ID=mRNA_M-pyrifera_M_contig103614.770.1|Name=mRNA_M-pyrifera_M_contig103614.770.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig103614:78..491- (Macrocystis pyrifera P11B4 male)
ATACTGATGTTCATCGTGTCGTTGAGCCTCGACGGCTTTGCGCCAGTCTC GGAGAACTGGCTGCTGGGGCCGACCAGCGACGCACTGGTGTCGATGGGCG CCAAGGACTCTTACCTCATCAAGGAGGAGCTGCAAGTGTGGCGCTACGTG ACGCCCTGCTTCCTGCACGCAGGCCTCATCCAGATTGCCTTCAATCTCTT TGCGCAGCTCCGCATGGGTCTGTACCTCGAGCGCACCTGGGGCTGGTACC GCTTCACTGTCATGTACTTTGTAAGCGGTACCGCTGGCATGTGCTTGAGT GCGTGCCTACAGCCCAACTCCATTAGCGTCGCCGCCAGCGCTTCGCTCAT GGGCGTCATGGGCGGCTACCTAGCGCAGCTCAACGTCACCTGGCAGAAGC TCGAAGGTACGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103614:78..491-

>mRNA_M-pyrifera_M_contig103614.770.1 ID=mRNA_M-pyrifera_M_contig103614.770.1|Name=mRNA_M-pyrifera_M_contig103614.770.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig103614:78..491- (Macrocystis pyrifera P11B4 male)
ATGTTCATCGTGTCGTTGAGCCTCGACGGCTTTGCGCCAGTCTCGGAGAA
CTGGCTGCTGGGGCCGACCAGCGACGCACTGGTGTCGATGGGCGCCAAGG
ACTCTTACCTCATCAAGGAGGAGCTGCAAGTGTGGCGCTACGTGACGCCC
TGCTTCCTGCACGCAGGCCTCATCCAGATTGCCTTCAATCTCTTTGCGCA
GCTCCGCATGGGTCTGTACCTCGAGCGCACCTGGGGCTGGTACCGCTTCA
CTGTCATGTACTTTGTAAGCGGTACCGCTGGCATGTGCTTGAGTGCGTGC
CTACAGCCCAACTCCATTAGCGTCGCCGCCAGCGCTTCGCTCATGGGCGT
CATGGGCGGCTACCTAGCGCAGCTCAACGTCACCTGGCAGAAGCTCGAAG
GTACGGTTATGTTCATCGTGTCGTTGAGCCTCGACGGCTTTGCGCCAGTC
TCGGAGAACTGGCTGCTGGGGCCGACCAGCGACGCACTGGTGTCGATGGG
CGCCAAGGACTCTTACCTCATCAAGGAGGAGCTGCAAGTGTGGCGCTACG
TGACGCCCTGCTTCCTGCACGCAGGCCTCATCCAGATTGCCTTCAATCTC
TTTGCGCAGCTCCGCATGGGTCTGTACCTCGAGCGCACCTGGGGCTGGTA
CCGCTTCACTGTCATGTACTTTGTAAGCGGTACCGCTGGCATGTGCTTGA
GTGCGTGCCTACAGCCCAACTCCATTAGCGTCGCCGCCAGCGCTTCGCTC
ATGGGCGTCATGGGCGGCTACCTAGCGCAGCTCAACGTCACCTGGCAGAA
GCTCGAAGGTACGGTT
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