mRNA_M-pyrifera_M_contig10361.767.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10361.767.1
Unique NamemRNA_M-pyrifera_M_contig10361.767.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 4.550e-80
Identity = 185/303 (61.06%), Postives = 201/303 (66.34%), Query Frame = 1 
Query:    1 QSPLSSPWKRPMLRALSTHILDPEGVTVTYYLYTSRLLLELIADPAISGMMEILEPIAQVTPPAVPKEQPVQFLSTRPYLRRISQEPSSRTPESAAVNVVDTPLPPSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------AEREYKFSLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERDPNGLNGYFWERREWADGGDPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIEV 750
            QSP SSPWKRPMLRALSTH+   +G+TVTY++YTSRLL ELIADPAISGMM+ LEP+AQVTPPAV ++QPVQF+STRP LRR                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                     A REY FSLAG+LKSAE+SGY  VD QPA+L V LF YQ+SSCQWMLDHERDP GLNGYFWERREWADGG PLWYFPLAG F L +PPH+TGGLLCEEMGLGKTIEV
Sbjct:   78 QSPQSSPWKRPMLRALSTHVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEKQPVQFVSTRPGLRRTPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGVAAXXXXXXXXXXXXXXXXAAARREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEV 380
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: W7TYI3_9STRA (Dna excision repair protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI3_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.110e-37
Identity = 100/286 (34.97%), Postives = 139/286 (48.60%), Query Frame = 1 
Query:    1 QSPLSSPWKRPMLRALSTH------ILDPE---------GVTVTYYLYTSRLLLELIADPAISGMMEILEPIAQV-----TPPAVPKEQPVQFLSTRPYLRRISQEPSSRTPESAAVNVVDTPL--------------PPSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEREYKFSLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERDPNGLNGYFWERREWADGG---DPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIE 747
            Q+P SSPW+RPM+R L++       +L P+          V VT+++Y  RL+ ELIA+     +M  L P   V      PP+  + +     + RP     S   +  T  +  V+VV+                   +S G                                 A R+++FSL G+L +AE++GY   D QP  L V +F++QRS+ QWMLD ER P+ LN YFWERR W D     +  +YFP AG   L+KPPH TGG+LCEEMGLGKT+E
Sbjct:  223 QNPQSSPWRRPMIRLLTSLQPPPAILLAPDEPEEEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSGAPRPS----SNATAGATSSNGVVDVVEESEGEGRVKERRSEVGGEEASVGGVLEPGGGDHGPEQEATSVPGATEGLSATPWERARRDFQFSLPGLLHAAESTGYAVRDPQPRGLTVSMFEFQRSTLQWMLDRERGPS-LNEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVE 503
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA)

HSP 1 Score: 144 bits (364), Expect = 9.620e-36
Identity = 98/286 (34.27%), Postives = 138/286 (48.25%), Query Frame = 1 
Query:    1 QSPLSSPWKRPMLRALST------HILDPE---------GVTVTYYLYTSRLLLELIADPAISGMMEILEPIAQV-----TPPAVPKEQPVQFLSTRPYLRRISQEPSSRTPESAAVNVVDTPL--------------PPSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEREYKFSLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERDPNGLNGYFWERREWADGG---DPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIE 747
            Q+P SSPW+RPM+R L++       +L P+          V VT+++Y  RL+ ELIA+     +M  L P   V      PP+  + +     + RP     S   +  T  +  ++VV+                   +S G                                   R+++FSL G+L +AE++GY   D QP  L V +F++QRS+ QWMLD ER P+ LN YFWERR W D     +  +YFP AG   L+KPPH TGG+LCEEMGLGKT+E
Sbjct:  223 QNPQSSPWRRPMIRLLTSLQSPPAMLLAPDEPEKEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSGAPRPS----SNATAGATSSNGVMDVVEESEGEGRVKERRSEVGGEEASVGGVLEPGGGDHGPEQEATSVPGATEGLSATPWERMRRDFQFSLPGLLHAAESTGYAVRDPQPRGLTVSMFEFQRSTLQWMLDRERGPS-LNEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVE 503
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: A0A835Z3A0_9STRA (SNF2-rel_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.160e-35
Identity = 115/253 (45.45%), Postives = 138/253 (54.55%), Query Frame = 1 
Query:   76 VTVTYYLYTSRLLLELIADPAISGMMEILEPIAQVTPPAVPKEQPVQFLSTRPYLRRISQEPSSRTPESAAVNVVDTPLPPSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEREYKFSLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQ---------------WMLDHERD--PNGLNGYFWERREWADGGDPLWYFPLAGGFLLDKPPHVTG------------GLLCEEMGLGKTIE 747
            V++TY++Y SRLL E++ADP I  ++  L P A+VTP A PK      + TR      S+ P++                             XXXXXXXXXXXX     XXXXXXXX      F L+G+L+ AE+ GY     QP +L V+LF++QRS+ Q               WMLDHE D  P GLNGYFWERREWADGG PLWYFPLAG   L  PP  TG            GLLCEEMGLGKT+E
Sbjct:  335 VSLTYFVYASRLLFEMVADPDILTLVGALTPPARVTPTATPK------MFTR------SEAPANNA--------------------------QXXXXXXXXXXXXDTFTQXXXXXXXXXXXXXDFKLSGLLRVAESEGYAWRVPQPPQLTVQLFEFQRSTYQXXXXXXXXXXXXXXXWMLDHEHDANPGGLNGYFWERREWADGGAPLWYFPLAGELGLHPPPRDTGEFXXXXXXXXXGGLLCEEMGLGKTVE 549
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: A0A6H5JHJ8_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ8_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 7.350e-35
Identity = 136/293 (46.42%), Postives = 154/293 (52.56%), Query Frame = 1 
Query:   13 SSPWKRPMLRALSTHILDPEGVTVTYYLYTSRLLLELIADPAISGMMEILEPIAQVTPPAVPKEQPVQFLSTRPYLRRI-SQEPSSRTPESAAVNVVDTPLPPSSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------AEREYKFSLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERDPNGLNGYFWERREWADGGDPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIEV 750
            SSPWKRPMLRALSTH+    G+ VTY++YTSRLL ELIADPAISGMM+ LEP+AQVTPPAV +EQPVQF+STRP +RR  +  P                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                              A REY FSLAG+LKSAE+SGY  VD Q +   + L D+  +  +                                          PPH+TGGLLCEEMGLGKTIEV
Sbjct:  199 SSPWKRPMLRALSTHVPTDYGLAVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGVRRTPAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARREYDFSLAGILKSAESSGYRVVDPQASITSIDLADWSTAELE------------------------------------------PPHITGGLLCEEMGLGKTIEV 449
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: A0A7S0NI25_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI25_MICPS)

HSP 1 Score: 115 bits (288), Expect = 8.710e-29
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:  448 FSLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERDPNGLNGYFWERREWADGGDPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIEV 750
            F+L G+L +A + GY    +QP  L + L D+QR +  WM D ER   GLNG FWE R WADGG   WYFPLAG   L +PP V GG+L EEMGLGKT+EV
Sbjct:   10 FTLPGLLAAAVSDGYDEC-AQPPNLALPLMDFQRQTLAWMRDKERSERGLNGVFWEERRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEV 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: A0A7S0DGF1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGF1_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 1.390e-26
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:  442 YKFSLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERDPN-GLNGYFWERREWADGGDPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIEV 750
            Y F+LAG+LK+ E+SGY     QP ++ + L  YQR +  WM DHE  PN GLN  FWE R+W DGG   +YFP AG   L++PP V GGLLCEEMGLGKT+E+
Sbjct:  308 YIFTLAGLLKAHEHSGYREAP-QPRDVSLTLKTYQRQTLAWMQDHESLPNMGLNSLFWEERQWLDGGS-YYYFPAAGELRLERPPTVRGGLLCEEMGLGKTLEM 409
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: A0A7S3V3S8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V3S8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.040e-25
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:  478 ENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERDPNGLNGYFWERREWADGGDPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIE 747
            EN+GY + + QP  L + + DYQ  + QWMLD E  P+GLNGYFW    W D  +P ++  + G   ++KPP V GGLLCEEMGLGKT+E
Sbjct:    2 ENTGYESTN-QPQGLALTMKDYQLQTLQWMLDQEAKPDGLNGYFWRACSWGDSKEPFYFSKVLGELRVEKPPLVRGGLLCEEMGLGKTLE 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC)

HSP 1 Score: 113 bits (282), Expect = 9.030e-25
Identity = 55/101 (54.46%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:  448 FSLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERDPNGLNGYFWERREWADGGDPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIEV 750
            F+L G+L +A + GY    + P  L + L D+QR +  WM D ER   GLNG FWE R WADGG   WYFPLAG   L +PP V GG+L EEMGLGKT+EV
Sbjct:  325 FTLPGLLAAAVSDGYDECPTPP-NLALPLMDFQRQTLAWMRDKERSERGLNGVFWEERRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEV 423
[Close]
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Match: A0A7S3X1Z3_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X1Z3_EMIHU)

HSP 1 Score: 101 bits (251), Expect = 9.550e-23
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:  448 FSLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERD---PNGLNGYFWERREWADGGDPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIEV 750
            FSL GVLKS E++GY   D QP  L + L  YQ  +  WM+D E +   P G+NG FWE R WADGG   +Y    G   L  PP   GGLLC+EMGLGKT+EV
Sbjct:   64 FSLEGVLKSCEHTGYREAD-QPEGLALALKRYQLQALAWMVDMEDETLLPRGVNGLFWEVRPWADGGR-YYYSRALGEMRLQAPPFALGGLLCDEMGLGKTLEV 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10361.767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K8_ECTSI4.550e-8061.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TYI3_9STRA3.110e-3734.97Dna excision repair protein n=2 Tax=Nannochloropsi... [more]
A0A4D9CZ02_9STRA9.620e-3634.27Helicase ATP-binding domain-containing protein n=1... [more]
A0A835Z3A0_9STRA4.160e-3545.45SNF2-rel_dom domain-containing protein n=1 Tax=Tri... [more]
A0A6H5JHJ8_9PHAE7.350e-3546.42SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A7S0NI25_MICPS8.710e-2955.45Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0DGF1_9EUKA1.390e-2655.77Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S3V3S8_9STRA7.040e-2551.11Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
C1EH46_MICCC9.030e-2554.46SNF2 super family n=1 Tax=Micromonas commoda (stra... [more]
A0A7S3X1Z3_EMIHU9.550e-2351.92Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10361contigM-pyrifera_M_contig10361:2686..9528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.9
Seed ortholog evalue2.9e-70
Seed eggNOG ortholog2880.D7G2K8
KEGG koko:K15710,ko:K15711
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,COG0553@1,KOG1001@2759,KOG1002@2759
EC2.3.2.27
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Exons5
Model size750
Cds size750
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10361.767.1prot_M-pyrifera_M_contig10361.767.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10361 2686..9528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.048815-CDS-M-pyrifera_M_contig10361:2685..27891622815542.048815-CDS-M-pyrifera_M_contig10361:2685..2789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 2686..2789 +
1692277456.1333733-CDS-M-pyrifera_M_contig10361:2685..27891692277456.1333733-CDS-M-pyrifera_M_contig10361:2685..2789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 2686..2789 +
1622815542.059971-CDS-M-pyrifera_M_contig10361:3491..35641622815542.059971-CDS-M-pyrifera_M_contig10361:3491..3564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 3492..3564 +
1692277456.1467059-CDS-M-pyrifera_M_contig10361:3491..35641692277456.1467059-CDS-M-pyrifera_M_contig10361:3491..3564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 3492..3564 +
1622815542.0726838-CDS-M-pyrifera_M_contig10361:5435..57681622815542.0726838-CDS-M-pyrifera_M_contig10361:5435..5768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 5436..5768 +
1692277456.1577084-CDS-M-pyrifera_M_contig10361:5435..57681692277456.1577084-CDS-M-pyrifera_M_contig10361:5435..5768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 5436..5768 +
1622815542.0863905-CDS-M-pyrifera_M_contig10361:7469..75791622815542.0863905-CDS-M-pyrifera_M_contig10361:7469..7579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 7470..7579 +
1692277456.1707067-CDS-M-pyrifera_M_contig10361:7469..75791692277456.1707067-CDS-M-pyrifera_M_contig10361:7469..7579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 7470..7579 +
1622815542.0979567-CDS-M-pyrifera_M_contig10361:9398..95281622815542.0979567-CDS-M-pyrifera_M_contig10361:9398..9528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 9399..9528 +
1692277456.181577-CDS-M-pyrifera_M_contig10361:9398..95281692277456.181577-CDS-M-pyrifera_M_contig10361:9398..9528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10361 9399..9528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10361.767.1

>prot_M-pyrifera_M_contig10361.767.1 ID=prot_M-pyrifera_M_contig10361.767.1|Name=mRNA_M-pyrifera_M_contig10361.767.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=250bp
QSPLSSPWKRPMLRALSTHILDPEGVTVTYYLYTSRLLLELIADPAISGM
MEILEPIAQVTPPAVPKEQPVQFLSTRPYLRRISQEPSSRTPESAAVNVV
DTPLPPSSGGGSGSGGGGGGGGGGGISRASEREQEQDRERERAAEREYKF
SLAGVLKSAENSGYLAVDSQPAELKVKLFDYQRSSCQWMLDHERDPNGLN
GYFWERREWADGGDPLWYFPLAGGFLLDKPPHVTGGLLCEEMGLGKTIEV
back to top

mRNA from alignment at M-pyrifera_M_contig10361:2686..9528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10361.767.1 ID=mRNA_M-pyrifera_M_contig10361.767.1|Name=mRNA_M-pyrifera_M_contig10361.767.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6843bp|location=Sequence derived from alignment at M-pyrifera_M_contig10361:2686..9528+ (Macrocystis pyrifera P11B4 male)
CAGTCTCCACTATCCTCTCCTTGGAAGAGGCCGATGCTGCGGGCCCTGAG
CACCCACATACTTGACCCCGAGGGCGTTACCGTCACATACTACCTCTACA
CCAGGTGAGACTGAGGTGGTGTGAGAAGGGGTGGCGGTGGGGGGGGAAGG
GGGGGGAGAGTGGGCGTTAGGGAAGGGAGGGGGGGGGGTAGGGGAGTCCT
ACGTCTGCATCAGGTAAGGTTGGAGAATGGGTTGTGATGTACAAGGGGGC
GGGGGGGAGGGAAGAGGGGGAAGGGAGGGAGGAGTTGGTAGGAAGGGAAA
GGGGTAAGGAAGGGTATATAGAGGAGCGAGTAGATGGCGTAGGGAGAGGT
GGGTGGGTAGGGGGAGGCGGGGGCAGGGGCGGAGGTGGGTAGATAGAGGG
GGGTGGGGGGGCACGTAGGGAGGAGGCGGGGGCAGGCTCGGATGGGCCGT
CATCGTAACCGCCTTGTTTTGTCTTTTGGTCGTTTATTTGTTTGTTCGTT
TGTTTGTTCGTGTATGTCATACGCATGCGTGTGATTGTGTGATTGTCTGC
TCGGAAGTTCGTCTGATATGTTTGCATGTCTACGTTCGTACCTGGTGCGA
TGAACTTTTTTGTGTTTGTTTTCTCGTGTTAAGTATGTGGTTGCTCGGTC
GTTGGTGACGGTGAGCTTCCGCTTGCTGCCTTGTTTCGAAGGTTTACCCT
GTTGTTTTCCCTTCTCCAATACCCCCCCCCCCCTCTCTCTCTCGCGCGCA
CTCCTTCTCCCCCCCCCCCTGCTTTTCCCTCCTCGCGTTTTCCGCCTGCT
GTGCAGCCGCCTGCTTTTGGAGCTCATCGCGGACCCCGCCATCAGCGGTA
TGATGGAAATCCTGGAACCAATCGCACAGGTAAAAGGATTGATGGGTGAT
TTTGTGAGTTTTTTATAGATTGCGTTTTGATACGGCGAAGCTTCTTGGTG
CGTCAGGACATTGTTTTGTGTATTTGGTGCACCGGAGAAGACTTTCGAGG
TCGTCGGGAACCGTTCGAGAATGGTCTGTGTCTGCTTTGTTCTACGTAGC
GAAAATTGGGCGTTTGGTTCATTATTCTTTGGCTGAAAAGTTCGCTTTTG
ATGTAGAGCGGCAAGTGGGGCACTGCTTGTTTGATCGCCTGGGTGGGAAT
GCCGAGTGGATGATGCGGCATAGGACGGTCGGGGTTGGTGGACTGGTACA
ACGCTCGCACAGACGAGGCTGCCGCTTGTGGCTGCCCAGCGGCGTACTTC
GTGATGTGAATTTAGTGGATCCGGTTTTTTTGTTTGCAACACGCCCTTGC
TCCCCGCCCCTGAATAACCCCCTCCCTCTCTATAAAGCCCTCCCCTGTAA
GCCCCTTCCCCCTCCGTAGTCCCCAACCCCTCCTTTCCTGCAGAAAGAAA
GCGAACGTCTGGATGGAGTTACCGGGGTTTCGTTTCCGCCCGTACTCTCT
TGTTTTCCTTTGGTGACCGTGCTGGCTTTGGACGACATGTTCTCGTTACT
CACCTCCTGTCGGACCTAGCTAAGCCCGACAGCAAATGAACGAGAACATC
GAAGCCAGCACGGTCTAAGCCCGACAGCAGTTGAGTAACGAGAGCATGTC
ACCCAAAGCCAGCACGGTCACCAAAGGAAAGCAAGCGAGTACGAGCGGGA
ACAAAACCCCGGCATCTCCACCCAGCGCGCTCGTTGTCTTTCTACGCGCT
CGTTGTCTTTCTACGACAGGAAGGAGGGGGGGGTTGGGGGCTGTGGAGGG
GGAAGGGGTTCACTGGGGAGGTAGCTTTAACCCTTTGGACGACATGATCT
CGTTGCTCAACTCCTGTCGGACGTGAGCGGAAGCTTTGCCTTGTCCTAAA
GCCGTCGAGGCCACAGTCGTTGAGAGAGAACTTTTGGTAGTCTTCCACAC
GAGGAGACTAGAGGGGACGACCTCCAGAGGTTAGCTGGTAGTTCGGATAG
GCGAGAGACATTAGTCCAGGTGAAGGATTCAAGAAGAAAAGTCGTAGCGT
GATGGAAAAGCTATCCCAGGAACTTACAGGTGGGGCATCGTAGCGGTTCC
ATCTGTCAAGCAATCTACGTCCGCTCCTACAGTATATATTGCTGTTAAAA
TTTCAAGAGTCACTCACTTGCGTTCGTCTGTAAGTAATAATACCTGCGTT
CTCGCTAGCTGTCGATCGGTCATCTCCGGTCGACGACGCAGATGTTACAA
AGAACACACTTCGAACTAGCACCCGACCAGACACAATCTAATCGACTCTC
TGTCCCTTCGTACCATTCTCTACTGCATTATACTTCTCGACCACAGATGT
TGTTAGTCTAACAGCAGTATCGTCTCGCTCGTTACACGTGAGCTCATCTT
CCCGCATTGGCCTACAGCCAGTCAGTCTCCTTGTGAGGACAGCTTGGTGC
CTGCAACACGAGACCGACTCACCCCCTAGTCCCGACTATATACCGCCATA
TAGTAGTACTGAAATCCAATATCACTTCATTCACTTCCCGCCTCTTGCCA
AAACGCGGCGGAAAAAATACATACCTGGTAAACTTTATGAATAAATAACG
CCTCCCTCGGCTTCGCCCTAGGATCAACCGGTGCCGTTCGTGTCCACCCG
GCCTCACCCCTACCGCCAACTCCACACCCACTAACCCCCCCGCCCCCCTC
CCCCTCCCCCTTCCCGCCCTCTACCAAAACGCTACGTTACATGTATATAT
ATATGTATATCTATACCTGGTACCTGGTATATTATATGTTTCTGAAAAAG
GTGACACCTCCGGCCGTGCCCAAGGAGCAACCGGTTCAGTTCCTGTCCAC
CCGCCCTTATCTACGAAGAATCAGCCAGGAGCCATCGTCGCGGACGCCAG
AATCCGCTGCGGTTAATGTCGTCGACACCCCCCTCCCCCCGTCCAGCGGA
GGCGGTAGCGGTAGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGAT
TAGCCGAGCGTCGGAGCGGGAGCAGGAGCAAGATAGGGAGAGGGAGCGCG
CCGCGGAGCGGGAGTACAAGTTTTCGCTGGCGGGTGTGTTGAAATCGGCG
GAGAACTCGGGCTACCTCGCGGTTGATTCTCAGGTTTGTTTGTTGGGTTG
TTCTTGTTCGGTTTTGGTCTGGTTTAGTTTGGTTCGGTTCGGTTTGGTTT
GGTTCAGTTGAGAGTTTTTTTGGGTGTGGTTTGATTTTGAGTTGGGTCTG
GTTTAGTTTGTGTTTTTGGGGTGGAGTTAGTTTGGTTTGGTGTGGTGTTG
GTTTTGGTTATGGTTTCGGTTTGGCTTAGGTTTTTTAGGGTTGGTCTGGT
TCGGGTTGAGTGGATTTCGAGTTTGTCCGCTTGTCTGTTTCCGGTTGATT
TCGTTTGGGTTGAATTGATTCGAGTTTGTTTCGTTGGTCTCGTCTGTTTT
TTTTGGGGGGGGAGGGGGAGGGTGGTTGGGTTGAGTTGGGTCCCGGCTTG
GTTGTGCGGTTTGGTTGTGGTTTTGTTGTTTTGTCCGATTTTGGTTTCGG
GGTGTGTTCTATGAGTTGTGCTGTGGTACATAAGTGGCACCTTCATGGTG
CCCGCGACCCGATAGCAATCGCATAGACTTGAGTACTTTTCGAAACTGAA
TAAAACACTACTACGGGGGACCATAGTAAATAGGACCTAATATTGTTAAT
ATAAATAGGTGAATACGTAGGAATTAATGTGTACCGTAGGTCCTATTTAA
TATGGCCCTCCGTAATAGCGAGGTTCCAAAGGTGTTGGGTACCTTCCTCA
AGTGACGGCATGGGCAACGCCGAATTTTTCTGAGGCTTCTACAACTATTA
CGGGGGAACATGGTAAATAGGACCTACGGTACACACAAAAACCTAAATAT
TTCCCTGTTTTTTTTTACCAAACGGATGCGTGCAATCTTCAGATTTCCCG
GGACAGATACGAGCATTTTGCCAGACGCGGACCCCCCACCAATGTTTTGG
TTTTATTTTTACTATGGTCCCCCGTGACGGTAGTAAGTAGGTGCAATCCG
ATGAACTACAGTATAACGAAGTATGTTGTAAAAACACTGAAAATGAGTGC
TCTCGCGAAAAATGTTGTAAAAACACCGAAAATGAATGTTATTCGAACGA
AAGTTTGGGTTAAGAAGACTATAAATAGCCAGTCAGAAATGTTTTGGCCG
AAAACGTGCTACCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCGC
TCCTCTGTCCAAGTAGCACGCCTCAAGCGCGGAGCCCCGCGGGTCAGAAA
TGTTTCACACATCGGACTGATCAGATAGATTAGATAGATCAGATAGGTCA
TGTAGATCGGGTAGATCAGGTAGACCAGATAGATCAGGTAGATCAGGTAG
ATCAGATATATATATATATAAGATATATTTGATATAGATAAGACATGTCG
GAGATCAGATAGACCAGATAGATCATGTCCTAACTTTACATGACATAGAT
AATTGAGGGCAGATATGAGTCCTGATCTGTATGAGCTACTGCTGTAGTAC
CGGCCCTCTCGAAAGATGCGAGGGTCGATGGTCATACGACTACGGCCATG
CATGACATTGAGTACCCCCCCTCCTCCCCATACCATAATCCCTCCCCCAC
NNNNNNNNNNCCCAAAAAGGCGGGGGGGGTGGGTCTATAAACTACCGCCC
TAGCTTACATTGGGTTCCCCCCCCCCCCCCCCCCCCCAAACCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTCGCTGGGTGGGAAATGTGT
CCCATTTTTACCCTCGTGTATTTGCTTCCGGAAGCCCGCCGAGCTCAAGG
TGAAGCTGTTTGATTACCAGCGCAGTAGCTGCCAGTGGATGCTGGACCAC
GAGAGGGACCCGAATGGCCTCAACGGCTACTTCTGGGAAAGGCGGTGCGT
GGGTTTGTTGTTGCTGATGCTTGTTTGTTTTTTTTTAGAATCTTTTTTTG
TTGTTTGGTTGTATTTTTTTTTTAGTTGTGGTGACGTTTTTCGGTGTTTG
GTTCTAATATCTTTTCGATTTTGGGTACATGTTTTTACTTCGATCTTTTG
GTTCTATATAGTTTTTGAGTTTGGTTTTGGTTTCGGTTTTGGTTTCAGGT
TTTTGTTTTTGTTTTTTTGTTTTGTTTTTCGTTTCTCGATTTTGGTTGTA
GTTTCGGTTCTGACTCGTGATTTTTGTCGTCGATTTTCGGTGTGGACTTC
TGGTTGCGGTTTTTGAGTTTGGTTTTGGTTTCGATTTTGGTTGTAGGTTT
TGAGGGCAGCTTTTACCGCTCGTCCGAGAAGATGGTCGAGATTTCACTGC
GTACGGCGCGAGTAAAACTGAAGCTAACCCCGACCCTAACTGTGATCCGA
TCTAAACCATTCAACCATTGGGTAGCAATACAGTAAGGTTCCCCCCATAT
GACGGTCTTGGCAAGTCGGTATCCCGATATATAGCGGTTGACAACGCTTG
GCCCGACTGGAGAATTGCACTCATACCCTGGAATGAACAAGGGGCGCCTT
CCCCCCGATTATGCGGTCATAGTGCTCTGGCACACCACAGCACCGTCTTA
CTCGGGGGGGGGGCTGCTGTAGCCTCAGTTTCTCGTACAGACTGTAGTGT
GTCCATTTTCTCGACCAAGTGGTATTCTCGGCTGGGAGATTTGTTTTTTT
TATTTTGGTCGGTGTTCAGGTGGTGTTGAGGCGGTTTGGCCACCTGTCTG
TTTTATATAGGGTGATCGCCGCCGGGTGTGATGTGTTGGTGCCCGTTCAT
GTTGTCGTCGGTGCTAATGTTTCCGTTGATTTCGATGTTGCCGTTGGTGT
TTCCATGTCGTGTGCTGCCTTCAGATGAAACCGTTCCTTTTTTCCCAACT
ACGTCAGCACACCGAGTGTCCGTCCTGATTCCTTATTTCTAGACAGATGC
TGACTCTGTGATCCCAGACAGTGAGACACAGAAAAGACGCAGAAAAATCG
AAAGCAAACAAAGTAGCAACTTGATGGTTAGCGCAGGTGAAACAGCGACG
TACCGGGTAGAAGAAGGTAACAACACAAGTATGCTGTGTATATGTTTATT
TCAACAGATCCTCGCCGGCTTCTGACGCACGCGTTGCCGTTCACTTTTGG
TGTTGTACCGTTGATGCTCGTGTGGCGGTCGATGTCATTGTTGGCTTAAT
TTACGGTGTTAATGTTGCCGTTGGTTCGTGTTGCTCGCACCGTCGGTGTT
GATTTGCCGTTGATATCGATGCCGGTCTGCTGCCGCGTGATGTTGTTGTT
GCTGTTGGCTTCTCTTTGCTGTGGCCGTCGATGTTGAGGTAGGTGGTGTT
GATGTCACCGTTGAAAATCCATGTATAGCAATGGTTGAGGTTGATGGTGG
TTTTTTTTCGTGGTATTTTGCTGCTCCATTTTTGTGCGGTAGTGCCGTTT
GATGATGTCCGTGTTGCCCTCGTCGTGGGGGACTGATGTAGGCTACTTAC
TGCCTATGCCAATGCTAATGCAGTCGCCATCCCCGCCGGTAGTCCTCTGC
TTTAATGCTAATATTTCCCCCCCCAACCACCCACCCTATCTGTGGTCTTA
TGACTACGGCGATGCACGACATGAGTAAACCCTCCCCCCCCCACACTACT
GTCGTCAACCCCACACCCCTACCCTCCCCCAACCCCTCTCCCTCACCCCC
GCCCCCGCCCCTACCGCCTTCCCCACATCCACTACATTCACTACCCCACC
CCCCCCGCACCAGCGAGTGGGCAGATGGCGGAGATCCCCTCTGGTACTTC
CCCTTGGCCGGCGGTTTCCTCCTGGACAAGCCGCCGCACGTGACGGGTGG
ACTCCTGTGCGAGGAGATGGGTCTAGGGAAGACCATCGAGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10361:2686..9528+

>mRNA_M-pyrifera_M_contig10361.767.1 ID=mRNA_M-pyrifera_M_contig10361.767.1|Name=mRNA_M-pyrifera_M_contig10361.767.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1500bp|location=Sequence derived from alignment at M-pyrifera_M_contig10361:2686..9528+ (Macrocystis pyrifera P11B4 male)
CAGTCTCCACTATCCTCTCCTTGGAAGAGGCCGATGCTGCGGGCCCTGAG
CACCCACATACTTGACCCCGAGGGCGTTACCGTCACATACTACCTCTACA
CCAGCAGTCTCCACTATCCTCTCCTTGGAAGAGGCCGATGCTGCGGGCCC
TGAGCACCCACATACTTGACCCCGAGGGCGTTACCGTCACATACTACCTC
TACACCAGCCGCCTGCTTTTGGAGCTCATCGCGGACCCCGCCATCAGCGG
TATGATGGAAATCCTGGAACCAATCGCACAGCCGCCTGCTTTTGGAGCTC
ATCGCGGACCCCGCCATCAGCGGTATGATGGAAATCCTGGAACCAATCGC
ACAGGTGACACCTCCGGCCGTGCCCAAGGAGCAACCGGTTCAGTTCCTGT
CCACCCGCCCTTATCTACGAAGAATCAGCCAGGAGCCATCGTCGCGGACG
CCAGAATCCGCTGCGGTTAATGTCGTCGACACCCCCCTCCCCCCGTCCAG
CGGAGGCGGTAGCGGTAGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTG
GGATTAGCCGAGCGTCGGAGCGGGAGCAGGAGCAAGATAGGGAGAGGGAG
CGCGCCGCGGAGCGGGAGTACAAGTTTTCGCTGGCGGGTGTGTTGAAATC
GGCGGAGAACTCGGGCTACCTCGCGGTTGATTCTCAGGTGACACCTCCGG
CCGTGCCCAAGGAGCAACCGGTTCAGTTCCTGTCCACCCGCCCTTATCTA
CGAAGAATCAGCCAGGAGCCATCGTCGCGGACGCCAGAATCCGCTGCGGT
TAATGTCGTCGACACCCCCCTCCCCCCGTCCAGCGGAGGCGGTAGCGGTA
GCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGATTAGCCGAGCGTCG
GAGCGGGAGCAGGAGCAAGATAGGGAGAGGGAGCGCGCCGCGGAGCGGGA
GTACAAGTTTTCGCTGGCGGGTGTGTTGAAATCGGCGGAGAACTCGGGCT
ACCTCGCGGTTGATTCTCAGCCCGCCGAGCTCAAGGTGAAGCTGTTTGAT
TACCAGCGCAGTAGCTGCCAGTGGATGCTGGACCACGAGAGGGACCCGAA
TGGCCTCAACGGCTACTTCTGGGAAAGGCGCCCGCCGAGCTCAAGGTGAA
GCTGTTTGATTACCAGCGCAGTAGCTGCCAGTGGATGCTGGACCACGAGA
GGGACCCGAATGGCCTCAACGGCTACTTCTGGGAAAGGCGCGAGTGGGCA
GATGGCGGAGATCCCCTCTGGTACTTCCCCTTGGCCGGCGGTTTCCTCCT
GGACAAGCCGCCGCACGTGACGGGTGGACTCCTGTGCGAGGAGATGGGTC
TAGGGAAGACCATCGAGGTGCGAGTGGGCAGATGGCGGAGATCCCCTCTG
GTACTTCCCCTTGGCCGGCGGTTTCCTCCTGGACAAGCCGCCGCACGTGA
CGGGTGGACTCCTGTGCGAGGAGATGGGTCTAGGGAAGACCATCGAGGTG
back to top