mRNA_M-pyrifera_M_contig103604.764.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103604.764.1
Unique NamemRNA_M-pyrifera_M_contig103604.764.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103604.764.1 vs. uniprot
Match: A0A815BAP6_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815BAP6_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 2.850e-10
Identity = 29/64 (45.31%), Postives = 35/64 (54.69%), Query Frame = 1 
Query:   13 CVWRGVKDNNCTHMKCAMCANEFCYFCGKDSKTWEPAGDEI----IYHHNENWESDPSRCVWFL 192
            C   G+KD  CTHM C  C+ ++CYFCGK   T E    E     IY HN NWE +P RC  + 
Sbjct:  202 CGLSGMKDEQCTHMICPNCSQQWCYFCGK---TLEDCDKETRYGTIYDHNVNWECNPLRCPMYF 262
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BLAST of mRNA_M-pyrifera_M_contig103604.764.1 vs. uniprot
Match: L1J8G3_GUITC (RING-type domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J8G3_GUITC)

HSP 1 Score: 51.6 bits (122), Expect = 5.210e-6
Identity = 24/62 (38.71%), Postives = 33/62 (53.23%), Query Frame = 1 
Query:   13 CVWRGVKDNNCTHMKCAMCANEFCYFCGKDSKTWEPAGDEI-IYHHNENWESD-PSRCVWFL 192
            C   G+KD+NCTHM+C  C   +CYFCGK  +    +     I+ HN  W +    RC  +L
Sbjct:  235 CGISGMKDDNCTHMRCLNCNEFWCYFCGKREQDLNKSSTSHGIWAHNVGWPNRLGERCPMYL 296
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103604.764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A815BAP6_9BILA2.850e-1045.31Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
L1J8G3_GUITC5.210e-638.71RING-type domain-containing protein n=1 Tax=Guilla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103604contigM-pyrifera_M_contig103604:291..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog6087.XP_004210736.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E8XI@1,2SFC1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.9055986-CDS-M-pyrifera_M_contig103604:290..4821622815541.9055986-CDS-M-pyrifera_M_contig103604:290..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103604 291..482 +
1692277456.0775366-CDS-M-pyrifera_M_contig103604:290..4821692277456.0775366-CDS-M-pyrifera_M_contig103604:290..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103604 291..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103604.764.1prot_M-pyrifera_M_contig103604.764.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103604 291..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103604.764.1

>prot_M-pyrifera_M_contig103604.764.1 ID=prot_M-pyrifera_M_contig103604.764.1|Name=mRNA_M-pyrifera_M_contig103604.764.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
DGSRCVWRGVKDNNCTHMKCAMCANEFCYFCGKDSKTWEPAGDEIIYHHN
ENWESDPSRCVWFL
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mRNA from alignment at M-pyrifera_M_contig103604:291..482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103604.764.1 ID=mRNA_M-pyrifera_M_contig103604.764.1|Name=mRNA_M-pyrifera_M_contig103604.764.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig103604:291..482+ (Macrocystis pyrifera P11B4 male)
GATGGCAGCCGCTGCGTGTGGAGAGGGGTCAAGGACAACAACTGCACTCA
CATGAAGTGTGCGATGTGCGCGAATGAGTTCTGCTACTTCTGTGGCAAAG
ACTCGAAGACATGGGAACCAGCAGGGGATGAAATCATCTACCATCACAAC
GAGAACTGGGAGAGCGACCCGTCGCGGTGTGTCTGGTTCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103604:291..482+

>mRNA_M-pyrifera_M_contig103604.764.1 ID=mRNA_M-pyrifera_M_contig103604.764.1|Name=mRNA_M-pyrifera_M_contig103604.764.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig103604:291..482+ (Macrocystis pyrifera P11B4 male)
GATGGCAGCCGCTGCGTGTGGAGAGGGGTCAAGGACAACAACTGCACTCA
CATGAAGTGTGCGATGTGCGCGAATGAGTTCTGCTACTTCTGTGGCAAAG
ACTCGAAGACATGGGAACCAGCAGGGGATGAAATCATCTACCATCACAAC
GAGAACTGGGAGAGCGACCCGTCGCGGTGTGTCTGGTTCTTGGATGGCAG
CCGCTGCGTGTGGAGAGGGGTCAAGGACAACAACTGCACTCACATGAAGT
GTGCGATGTGCGCGAATGAGTTCTGCTACTTCTGTGGCAAAGACTCGAAG
ACATGGGAACCAGCAGGGGATGAAATCATCTACCATCACAACGAGAACTG
GGAGAGCGACCCGTCGCGGTGTGTCTGGTTCTTG
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