mRNA_M-pyrifera_M_contig103573.758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103573.758.1
Unique NamemRNA_M-pyrifera_M_contig103573.758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103573.758.1 vs. uniprot
Match: A0A6H5L9P4_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9P4_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.430e-36
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    4 DAVAEFSVSGELGEACTCLSEIDPELRWAAVSGAVTDAMDRKQRHRDALGVVLSTGAKEGILTAEAILKGLGDVLELVPDVCIDVPQVFVY 276
            D VAEF+VSGELGEACTCL EID E+RWAAVS AV D+ +RKQ+HRDALGVVL+ GAK+G L+ EA+LKG GDVL++VPDVCIDVPQ   Y
Sbjct:  734 DVVAEFAVSGELGEACTCLKEIDAEVRWAAVSEAVNDSFERKQKHRDALGVVLAAGAKDGALSKEALLKGFGDVLDMVPDVCIDVPQATQY 824
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BLAST of mRNA_M-pyrifera_M_contig103573.758.1 vs. uniprot
Match: D8LKQ5_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.320e-36
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    4 DAVAEFSVSGELGEACTCLSEIDPELRWAAVSGAVTDAMDRKQRHRDALGVVLSTGAKEGILTAEAILKGLGDVLELVPDVCIDVPQVFVY 276
            D VAEF+VSGELGEACTCL EID E+RWAAVS AV D+ +RKQ+HRDALGVVL+ GAK+G L+ EA+LKG GDVL++VPDVCIDVPQ   Y
Sbjct:  774 DVVAEFAVSGELGEACTCLMEIDAEVRWAAVSEAVNDSFERKQKHRDALGVVLAAGAKDGALSEEALLKGFGDVLDMVPDVCIDVPQATQY 864
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BLAST of mRNA_M-pyrifera_M_contig103573.758.1 vs. uniprot
Match: A0A7M5WWV8_9CNID (Uncharacterized protein n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WWV8_9CNID)

HSP 1 Score: 54.3 bits (129), Expect = 1.840e-6
Identity = 28/90 (31.11%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:   10 VAEFSVSGELGEACTCLSEID-PELRWAAVSGAVTDAMDRKQRHRDALGVVLSTGAKEGILTAEAILKGLGDVLELVPDVCIDVPQVFVY 276
            + EF    +  EA  CL E+D P L WA V  A+  A + K ++R   G +     K+ ++      KG+  V+E+ PD+ +D+P+ + Y
Sbjct: 1111 IEEFFGVLDYKEAMLCLKELDAPHLHWAFVEEAIVIASEMKPQNRVNAGKLFCRMVKDNLIKFAEFQKGMSSVIEIAPDMAVDIPRFYAY 1200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103573.758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L9P4_9PHAE2.430e-3673.63MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LKQ5_ECTSI3.320e-3673.63Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus... [more]
A0A7M5WWV8_9CNID1.840e-631.11Uncharacterized protein n=2 Tax=Clytia hemisphaeri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103573contigM-pyrifera_M_contig103573:197..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.8e-30
Seed eggNOG ortholog2880.D8LKQ5
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000932,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016281,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031369,GO:0032991,GO:0034063,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.3950684-CDS-M-pyrifera_M_contig103573:196..4721622815541.3950684-CDS-M-pyrifera_M_contig103573:196..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103573 197..472 +
1692277455.7662416-CDS-M-pyrifera_M_contig103573:196..4721692277455.7662416-CDS-M-pyrifera_M_contig103573:196..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103573 197..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103573.758.1prot_M-pyrifera_M_contig103573.758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103573 197..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103573.758.1

>prot_M-pyrifera_M_contig103573.758.1 ID=prot_M-pyrifera_M_contig103573.758.1|Name=mRNA_M-pyrifera_M_contig103573.758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
TDAVAEFSVSGELGEACTCLSEIDPELRWAAVSGAVTDAMDRKQRHRDAL
GVVLSTGAKEGILTAEAILKGLGDVLELVPDVCIDVPQVFVY
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mRNA from alignment at M-pyrifera_M_contig103573:197..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103573.758.1 ID=mRNA_M-pyrifera_M_contig103573.758.1|Name=mRNA_M-pyrifera_M_contig103573.758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig103573:197..472+ (Macrocystis pyrifera P11B4 male)
ACAGATGCTGTGGCCGAGTTTTCGGTCTCTGGGGAGCTCGGGGAGGCGTG
CACGTGCCTGTCTGAGATCGACCCGGAGCTGCGCTGGGCGGCGGTGTCGG
GGGCGGTGACCGATGCCATGGACCGAAAGCAGAGGCACCGCGACGCCCTA
GGGGTAGTGCTGTCGACGGGGGCCAAGGAGGGCATACTGACGGCGGAGGC
CATCCTCAAGGGCTTGGGGGACGTTCTGGAGCTGGTGCCCGATGTCTGTA
TCGACGTTCCTCAGGTATTTGTGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103573:197..472+

>mRNA_M-pyrifera_M_contig103573.758.1 ID=mRNA_M-pyrifera_M_contig103573.758.1|Name=mRNA_M-pyrifera_M_contig103573.758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig103573:197..472+ (Macrocystis pyrifera P11B4 male)
ACAGATGCTGTGGCCGAGTTTTCGGTCTCTGGGGAGCTCGGGGAGGCGTG
CACGTGCCTGTCTGAGATCGACCCGGAGCTGCGCTGGGCGGCGGTGTCGG
GGGCGGTGACCGATGCCATGGACCGAAAGCAGAGGCACCGCGACGCCCTA
GGGGTAGTGCTGTCGACGGGGGCCAAGGAGGGCATACTGACGGCGGAGGC
CATCCTCAAGGGCTTGGGGGACGTTCTGGAGCTGGTGCCCGATGTCTGTA
TCGACGTTCCTCAGGTATTTGTGTATACAGATGCTGTGGCCGAGTTTTCG
GTCTCTGGGGAGCTCGGGGAGGCGTGCACGTGCCTGTCTGAGATCGACCC
GGAGCTGCGCTGGGCGGCGGTGTCGGGGGCGGTGACCGATGCCATGGACC
GAAAGCAGAGGCACCGCGACGCCCTAGGGGTAGTGCTGTCGACGGGGGCC
AAGGAGGGCATACTGACGGCGGAGGCCATCCTCAAGGGCTTGGGGGACGT
TCTGGAGCTGGTGCCCGATGTCTGTATCGACGTTCCTCAGGTATTTGTGT
AT
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