mRNA_M-pyrifera_M_contig10357.757.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10357.757.1
Unique NamemRNA_M-pyrifera_M_contig10357.757.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10357.757.1 vs. uniprot
Match: D7FU91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU91_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 8.060e-23
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 2 
Query:    2 VATGDKLMQSLVVGAGAEVFSPDRIIEEIQICHREAREYTSMYLRRKEKAMEASDMEDLLSSVRHVEKKAKLRK 223
            VATGDKLMQSLVVGAGAEVFSPDRIIEEI+I H EA  YT  YLRRK+  +E S+M+DLL  VR  E KAK R+
Sbjct:  147 VATGDKLMQSLVVGAGAEVFSPDRIIEEIEISHSEAVAYTDRYLRRKQSMIEKSEMQDLLDRVRSAEDKAKRRR 220
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10357.757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU91_ECTSI8.060e-2371.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10357contigM-pyrifera_M_contig10357:7086..8584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size227
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10357.757.1prot_M-pyrifera_M_contig10357.757.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10357 7086..8562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.3227372-CDS-M-pyrifera_M_contig10357:7085..71661622815541.3227372-CDS-M-pyrifera_M_contig10357:7085..7166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10357 7086..7166 -
1692277455.7315981-CDS-M-pyrifera_M_contig10357:7085..71661692277455.7315981-CDS-M-pyrifera_M_contig10357:7085..7166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10357 7086..7166 -
1622815541.3353388-CDS-M-pyrifera_M_contig10357:7600..76631622815541.3353388-CDS-M-pyrifera_M_contig10357:7600..7663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10357 7601..7663 -
1692277455.7405274-CDS-M-pyrifera_M_contig10357:7600..76631692277455.7405274-CDS-M-pyrifera_M_contig10357:7600..7663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10357 7601..7663 -
1622815541.348864-CDS-M-pyrifera_M_contig10357:8502..85621622815541.348864-CDS-M-pyrifera_M_contig10357:8502..8562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10357 8503..8562 -
1692277455.750172-CDS-M-pyrifera_M_contig10357:8502..85621692277455.750172-CDS-M-pyrifera_M_contig10357:8502..8562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10357 8503..8562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.3598135-UTR-M-pyrifera_M_contig10357:8562..85841622815541.3598135-UTR-M-pyrifera_M_contig10357:8562..8584Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10357 8563..8584 -
1692277455.7576454-UTR-M-pyrifera_M_contig10357:8562..85841692277455.7576454-UTR-M-pyrifera_M_contig10357:8562..8584Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10357 8563..8584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10357.757.1

>prot_M-pyrifera_M_contig10357.757.1 ID=prot_M-pyrifera_M_contig10357.757.1|Name=mRNA_M-pyrifera_M_contig10357.757.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MQSLVVGAGAEVFSPDRIIEEIQICHREAREYTSMYLRRKEKAMEASDME
DLLSSVRHVEKKAKLRKM
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mRNA from alignment at M-pyrifera_M_contig10357:7086..8584-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10357.757.1 ID=mRNA_M-pyrifera_M_contig10357.757.1|Name=mRNA_M-pyrifera_M_contig10357.757.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1499bp|location=Sequence derived from alignment at M-pyrifera_M_contig10357:7086..8584- (Macrocystis pyrifera P11B4 male)
GGTGGCGACCGGGGACAAGCTGATGCAGAGCCTGGTGGTGGGCGCCGGCG
CCGAGGTGTTTAGCCCGGACCGCATCATCGAGGTGAGGACCTGCATGGCG
ACTAACCGCTAGTCATCTGCCGCGCGGCAGCCTCACGGCTAGCCCACCCG
CCCGCCCAGGCACGCTTCGGCACTACTGTCGCCCGTTGCGCCGCTCACGA
AATGTTTTGATCGCTTCGCTTTGCCTCCTCTCCACTCGGGGGAGTTGAAG
CGGAGGTTGGGGTGGGGTTAGGGGCAGGGGTGCGGGTGTACTCGATATCA
TGCATGACCGTAGTCGTATGACTGTAGACCCTCGCACCACCCCTACAGTC
CCGGGACGGAGCACGTCGGGTTTTTCACCGACCCGGTAAACATCGCTTGC
ACCAAGCGCGAAGCGCCGTGAGGTGTTTGACGAATCGCATGAAGGTTCGG
AGTTGGGGGTGAGAGTTGGGGTGGAGTTGGGGACGAGAGTGGGAGTGGGG
ATGAGGGTGCGGGTGGGGGTATGGATGTCGGTGGAGGTTGGGACGGGTAT
GGGAATAGGTGTGGGGGTGGGGGTGGAGGGGGTGCGGGTGGGGACGGTTC
GGTGGGAAAGCGGCTTGTCTGTGGCCGTGGCGGCGGCGGCCTGGCTGCGA
TGTATGACATAATCGGCGTGTTTTCGTGCGTCGCTTCCGGAACTCCTCCG
GTCAGGTCATAGTTATCTGTTGAGAGTGGTCTCCGAACGGTTAACGGTTG
ACGGCGAACGCTGAACTGGCTCTTTCAGAAATGTTCCTTCCTTATGTTTT
AGTGGGAAGGAGGAAGAAATCACGCATTAAAACGTAGAAACGAAGTCCCG
GGGGAGGCGTTTTGTCTGACCGCTGCGCCGCTTTTTTTTTTTCGTTTTTT
GCTTTGTTTTTGTTTTTTCAGGAGATTCAGATCTGCCACCGGGAAGCGAG
GGAATACACGAGCATGTACCTTCGGAGAAAAGAGGTACGGTTGCTATTTA
TTCACGACACTCGTGCGTTGTTGTGGTATCCAACTCTGTTGATTACCAGG
TATATAGCACTACTCGCTAGACCACTCAGTCAGCGCTGACTGGCGTGATC
TAGCAGGTAGTGCTATATAGCCAACAGGCTCTTGTACTCTCCAGCTTGCA
GCAACTGTCTACGCTCGTCGGCACTTTATAAGCATGCCGTCGTCACAGGT
GTGCACCCTTCCCCCAACGAAAATCGTGTGAAAACCTTACCCTATTATGC
GATGCCTTTGACCCACGTACCTAGTACGATATTGACCGGCCACAGCACTC
ACCCACCCATCCACCCACCCACCTACCCACCCACCCAACCCTCTCCCACC
CGTCTATCCACCCCCCACCTTACCCACCCCGCCCCGCCCTACCCCACCCC
ATGCTTCGAATTGCTCAGAAAGCTATGGAGGCGTCGGACATGGAAGACCT
CCTGAGCAGCGTACGACACGTCGAGAAGAAGGCCAAGCTCAGGAAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10357:7086..8584-

>mRNA_M-pyrifera_M_contig10357.757.1 ID=mRNA_M-pyrifera_M_contig10357.757.1|Name=mRNA_M-pyrifera_M_contig10357.757.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig10357:7086..8584- (Macrocystis pyrifera P11B4 male)
ATGCAGAGCCTGGTGGTGGGCGCCGGCGCCGAGGTGTTTAGCCCGGACCG
CATCATCGAGATGCAGAGCCTGGTGGTGGGCGCCGGCGCCGAGGTGTTTA
GCCCGGACCGCATCATCGAGGAGATTCAGATCTGCCACCGGGAAGCGAGG
GAATACACGAGCATGTACCTTCGGAGAAAAGAGGAGATTCAGATCTGCCA
CCGGGAAGCGAGGGAATACACGAGCATGTACCTTCGGAGAAAAGAGAAAG
CTATGGAGGCGTCGGACATGGAAGACCTCCTGAGCAGCGTACGACACGTC
GAGAAGAAGGCCAAGCTCAGGAAGATGAAAGCTATGGAGGCGTCGGACAT
GGAAGACCTCCTGAGCAGCGTACGACACGTCGAGAAGAAGGCCAAGCTCA
GGAAGATG
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