mRNA_M-pyrifera_M_contig103545.755.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103545.755.1
Unique NamemRNA_M-pyrifera_M_contig103545.755.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103545.755.1 vs. uniprot
Match: A0A7S1G4R3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4R3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.920e-7
Identity = 38/124 (30.65%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:   16 LHPNIPLSSAFSVNWIVILLLLLVGFNDPLFALHFVFPRGFWAFLSLLGQLAFLTALLTFWLCEVGLL------ALADPREATMRWFFLPKLIPMVLLFLILLGLYSANLINSINNPLYDWKQE 369
            LHP  P + ++   W ++L++LL GFNDPLFAL    P    A +S +    FL+A+L FWLC + ++      A A P+   +  F+ PK++ +   +L  + +Y    +    +P Y+ +++
Sbjct:  221 LHPR-PETRSYEQRWTLVLMVLLCGFNDPLFALDVFVPSVALAVVSAVMTTTFLSAVLLFWLCVLDVIRISSSGASAPPKRGWL--FYAPKVLLIGAFWLCTMLIYVWTRMREAEDPTYEARED 341
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BLAST of mRNA_M-pyrifera_M_contig103545.755.1 vs. uniprot
Match: A0A814GG72_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814GG72_9BILA)

HSP 1 Score: 52.0 bits (123), Expect = 4.150e-5
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 1 
Query:   34 LSSAFSVNWIVILLLLLVGFNDPLFALHFVFPRGFWAFLSLLGQLAFLTALLTFWLCEVGLLALADPREATMRW--FFLPKLIPMVLLFLILLGLYSANLINSINNPLYD 357
            L  +    W+V+LL+LLV +NDP + L F+    F + L  L Q  FL  L+ FWL           R+   R+  F+LPKLI + LL++  + L S    N + +P Y+
Sbjct: 1139 LDWSLEQRWMVLLLVLLVFYNDPFYPLTFLIDSAFPSILDGLLQATFLCTLMLFWLSVYH-----GVRQTVRRFLPFYLPKLILVGLLWIFAIVLSSWRTFNEMKDPTYN 1243
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103545.755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1G4R3_9STRA1.920e-730.65Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A814GG72_9BILA4.150e-534.55Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103545contigM-pyrifera_M_contig103545:207..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.8
Seed ortholog evalue5.2e-07
Seed eggNOG ortholog10224.XP_002734424.1
Preferred nameTMEM181
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0008150,GO:0009405,GO:0015643,GO:0044419,GO:0051704
EggNOG free text desc.pathogenesis
EggNOG OGs28HK3@1,2QPXU@2759,38HV8@33154,3B96D@33208,3CXR3@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.1807518-CDS-M-pyrifera_M_contig103545:206..5931622815541.1807518-CDS-M-pyrifera_M_contig103545:206..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103545 207..593 +
1692277455.680347-CDS-M-pyrifera_M_contig103545:206..5931692277455.680347-CDS-M-pyrifera_M_contig103545:206..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103545 207..593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103545.755.1prot_M-pyrifera_M_contig103545.755.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103545 207..593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103545.755.1

>prot_M-pyrifera_M_contig103545.755.1 ID=prot_M-pyrifera_M_contig103545.755.1|Name=mRNA_M-pyrifera_M_contig103545.755.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
WFVCCLHPNIPLSSAFSVNWIVILLLLLVGFNDPLFALHFVFPRGFWAFL
SLLGQLAFLTALLTFWLCEVGLLALADPREATMRWFFLPKLIPMVLLFLI
LLGLYSANLINSINNPLYDWKQELGASLG
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mRNA from alignment at M-pyrifera_M_contig103545:207..593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103545.755.1 ID=mRNA_M-pyrifera_M_contig103545.755.1|Name=mRNA_M-pyrifera_M_contig103545.755.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig103545:207..593+ (Macrocystis pyrifera P11B4 male)
TGGTTTGTTTGCTGCTTGCACCCGAACATTCCCCTCTCTTCCGCCTTTTC
CGTGAATTGGATCGTCATCCTCCTTCTCCTCCTCGTGGGTTTCAATGATC
CTCTCTTTGCACTGCACTTTGTTTTTCCTCGTGGATTTTGGGCTTTCCTC
TCACTCCTTGGCCAATTGGCGTTCCTCACAGCACTGCTTACGTTTTGGCT
CTGTGAAGTTGGCCTCCTCGCACTTGCTGATCCACGGGAAGCAACGATGC
GATGGTTTTTCCTCCCGAAACTGATTCCCATGGTTTTGCTGTTTCTCATC
CTTCTTGGTCTCTACTCCGCCAACCTCATCAACTCCATCAACAACCCTTT
GTACGACTGGAAGCAAGAGCTTGGGGCATCTCTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103545:207..593+

>mRNA_M-pyrifera_M_contig103545.755.1 ID=mRNA_M-pyrifera_M_contig103545.755.1|Name=mRNA_M-pyrifera_M_contig103545.755.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig103545:207..593+ (Macrocystis pyrifera P11B4 male)
TGGTTTGTTTGCTGCTTGCACCCGAACATTCCCCTCTCTTCCGCCTTTTC
CGTGAATTGGATCGTCATCCTCCTTCTCCTCCTCGTGGGTTTCAATGATC
CTCTCTTTGCACTGCACTTTGTTTTTCCTCGTGGATTTTGGGCTTTCCTC
TCACTCCTTGGCCAATTGGCGTTCCTCACAGCACTGCTTACGTTTTGGCT
CTGTGAAGTTGGCCTCCTCGCACTTGCTGATCCACGGGAAGCAACGATGC
GATGGTTTTTCCTCCCGAAACTGATTCCCATGGTTTTGCTGTTTCTCATC
CTTCTTGGTCTCTACTCCGCCAACCTCATCAACTCCATCAACAACCCTTT
GTACGACTGGAAGCAAGAGCTTGGGGCATCTCTTGGCTGGTTTGTTTGCT
GCTTGCACCCGAACATTCCCCTCTCTTCCGCCTTTTCCGTGAATTGGATC
GTCATCCTCCTTCTCCTCCTCGTGGGTTTCAATGATCCTCTCTTTGCACT
GCACTTTGTTTTTCCTCGTGGATTTTGGGCTTTCCTCTCACTCCTTGGCC
AATTGGCGTTCCTCACAGCACTGCTTACGTTTTGGCTCTGTGAAGTTGGC
CTCCTCGCACTTGCTGATCCACGGGAAGCAACGATGCGATGGTTTTTCCT
CCCGAAACTGATTCCCATGGTTTTGCTGTTTCTCATCCTTCTTGGTCTCT
ACTCCGCCAACCTCATCAACTCCATCAACAACCCTTTGTACGACTGGAAG
CAAGAGCTTGGGGCATCTCTTGGC
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