mRNA_M-pyrifera_M_contig103540.754.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103540.754.1
Unique NamemRNA_M-pyrifera_M_contig103540.754.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: A0A5A8E3Y2_CAFRO (Tr-type G domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3Y2_CAFRO)

HSP 1 Score: 313 bits (801), Expect = 6.920e-101
Identity = 157/218 (72.02%), Postives = 182/218 (83.49%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKE--RSSKCDWYDGPSLIELLDGVKIPSRDDEAALRMPISDR 648
            IL+LT MVDQRTIDK+TREAK KNRESWFLA+IMD D+ EREKGKTVEVGRA FET+++R T+LDAPGHKS+VPNMIQGASQAD+ VLVISAR+GEFE GFD+GGQTREHA LAKTLGV  L+VAVNKMD+PTVEW +ERFDEIK  L  FL+++ GF KK I Y+PIS LTG NVKE   S   DW+ GP+L++  + VKIP RD  +ALRMPI DR
Sbjct:  184 ILFLTGMVDQRTIDKFTREAKAKNRESWFLAYIMDTDEQEREKGKTVEVGRAPFETENRRFTVLDAPGHKSFVPNMIQGASQADIGVLVISARKGEFEAGFDKGGQTREHAQLAKTLGVKELIVAVNKMDDPTVEWGEERFDEIKTALAPFLKQS-GFSKKRIRYIPISGLTGANVKEPLASGVADWFSGPTLLQAFEDVKIPGRDPYSALRMPILDR 400
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BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: A0A7S0JXH3_CAFRO (Chorismate synthase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JXH3_CAFRO)

HSP 1 Score: 311 bits (798), Expect = 6.290e-98
Identity = 156/218 (71.56%), Postives = 182/218 (83.49%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKE--RSSKCDWYDGPSLIELLDGVKIPSRDDEAALRMPISDR 648
            IL+LT MVDQRTIDK+TREAK KNRESWFLA+IMD D+ EREKGKTVEVGRA FET+++R T+LDAPGHKS+VPNMIQGASQAD+ VLVISAR+GEFE GFD+GGQTREHA LAKTLGV  L+VAVNKMD+PTVEW +ERFDEIK  L  FL+++ GF KK I Y+PIS LTG NVKE   +   DW+ GP+L++  + VKIP RD  +ALRMPI DR
Sbjct:  434 ILFLTGMVDQRTIDKFTREAKAKNRESWFLAYIMDTDEQEREKGKTVEVGRAPFETENRRFTVLDAPGHKSFVPNMIQGASQADIGVLVISARKGEFEAGFDKGGQTREHAQLAKTLGVKELIVAVNKMDDPTVEWGEERFDEIKTALAPFLKQS-GFSKKRIRYIPISGLTGANVKEPLAAGVADWFSGPTLLQAFEDVKIPGRDPYSALRMPILDR 650
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BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: A0A7S2AF42_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AF42_9DINO)

HSP 1 Score: 292 bits (748), Expect = 2.960e-94
Identity = 138/215 (64.19%), Postives = 181/215 (84.19%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKERSSKCDWYDGPSLIELLDGVKIPSRDDEAALRMPISD 645
            +LYL   VD+R I+KY +EAK KNRESWFLA+IMD +++E+ KGKTVEVGRAHF T+++R TILDAPGHKSYVPNMI GASQAD+ VL+ISAR+GEFETGF+RGGQTREHALLAKTLGV +L++AVNKMD+P+VEW +ER+DEI ++L  FL+ ++GFK++ + ++PIS LTGDN+K+R    DW+ G +L+ LLD +++P RD  A LR+P+ D
Sbjct:   75 VLYLCGCVDERQIEKYVKEAKDKNRESWFLAYIMDTNEEEKAKGKTVEVGRAHFVTENRRWTILDAPGHKSYVPNMIGGASQADMGVLIISARKGEFETGFERGGQTREHALLAKTLGVDKLIIAVNKMDDPSVEWQQERYDEIVKKLSPFLK-SSGFKEEQVIFLPISGLTGDNIKDRKGTPDWFTGKTLLNLLDSLEVPKRDANAPLRIPMLD 288
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BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: B8LNF8_PICSI (Tr-type G domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LNF8_PICSI)

HSP 1 Score: 291 bits (745), Expect = 5.300e-94
Identity = 140/218 (64.22%), Postives = 176/218 (80.73%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKERSSK--CDWYDGPSLIELLDGVKIPSRDDEAALRMPISDR 648
            ILYL++MVD+RTI KY +EAK KNRESW++A+IMD +++ER KGKTVEVGRAHFET   R TILDAPGHKSYVPNMI GASQADV VLVISAR+GEFETGF+RGGQTREHA+LAKTLG+ +L V VNKMD+P+VEW K+RFDEI++++  FL+      KK ++++PISAL G N+K+R  K  C W++GP L E LD +++P RD     RMP+ D+
Sbjct:   54 ILYLSKMVDERTIQKYEKEAKEKNRESWYMAYIMDTNEEERAKGKTVEVGRAHFETDKTRFTILDAPGHKSYVPNMISGASQADVGVLVISARKGEFETGFERGGQTREHAMLAKTLGICKLFVVVNKMDDPSVEWAKDRFDEIEKKISPFLKSCGYNLKKDVQFLPISALHGTNMKDRVPKNVCGWWNGPCLFEALDAIELPPRDPRGPFRMPLIDK 271
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BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: A0A804MI10_MAIZE (Tr-type G domain-containing protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804MI10_MAIZE)

HSP 1 Score: 288 bits (738), Expect = 6.290e-94
Identity = 139/218 (63.76%), Postives = 176/218 (80.73%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKERSSK--CDWYDGPSLIELLDGVKIPSRDDEAALRMPISDR 648
            IL+L+  VD RTI KY +EAK K+RESW++A+IMD +++ER KGKTVEVGRAHFET+  R TILDAPGHKSYVPNMI GASQAD+ VLVISAR+GEFETG++RGGQTREH LLAKTLGV++LVV +NKMDEPTV+W KER+DEI+ ++  FL+ +    KK ++++PIS L G N+K R  K  C W+DGP L E+LD ++IP RD +  +RMPI D+
Sbjct:  123 ILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEHTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLVVVINKMDEPTVKWSKERYDEIEAKMVPFLKSSGYNVKKDVQFLPISGLVGTNMKTRMDKSICSWWDGPCLFEVLDRIEIPLRDPKGPVRMPIIDK 340
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BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: A0A7S3WXR7_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WXR7_9SPIT)

HSP 1 Score: 289 bits (740), Expect = 1.020e-93
Identity = 136/215 (63.26%), Postives = 178/215 (82.79%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKERSSKCDWYDGPSLIELLDGVKIPSRDDEAALRMPISD 645
            ILYL+  VD+RT++KY +EAK KNRESWFLA+IMD  D+E+ KGKTVEVGRAHFET ++R T+LDAPGHKSYVPNMI GASQADV VL+ISAR+GEFETGF+RGGQTREHALLAKTLGV +L++A+NKMD+P+VEWD+ R+DEI+ ++  FL+ T+GFK   + ++P+S LTGDN+KER+    WY G +L+++LD   +  R+ +  LR+P+ D
Sbjct:   18 ILYLSGCVDERTVEKYMKEAKDKNRESWFLAYIMDTSDEEKAKGKTVEVGRAHFETPNRRFTVLDAPGHKSYVPNMIAGASQADVGVLIISARKGEFETGFERGGQTREHALLAKTLGVEKLILAINKMDDPSVEWDQSRYDEIQTKMSPFLK-TSGFKDDQLIFLPMSGLTGDNIKERNKTPKWYTGKTLLDVLDTFDVTERNRDLPLRIPMLD 231
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BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: A0A1D6J4S1_MAIZE (Translation elongation factor EF1A/initiation factor IF2gamma family protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6J4S1_MAIZE)

HSP 1 Score: 288 bits (736), Expect = 1.300e-93
Identity = 138/218 (63.30%), Postives = 176/218 (80.73%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKERSSK--CDWYDGPSLIELLDGVKIPSRDDEAALRMPISDR 648
            IL+L+  VD RTI KY +EAK K+RESW++A+IMD +++ER KGKTVEVGRAHFET+  R TILDAPGHKSYVPNMI GASQAD+ VLVISAR+GEFETG++RGGQTREH LLAKTLGV++LVV +NKMDEPTV+W KER+DEI+ ++  FL+ +    KK ++++PIS L G N+K R  K  C W+DGP L E+LD + +P RD + ++RMPI D+
Sbjct:  118 ILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEHTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLVVVINKMDEPTVKWSKERYDEIEAKMVPFLKSSGYNVKKDVQFLPISGLVGTNMKTRMDKSICSWWDGPCLFEVLDRIVVPLRDPKGSVRMPIIDK 335
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BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: A0A540LWA7_MALBA (Tr-type G domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LWA7_MALBA)

HSP 1 Score: 288 bits (738), Expect = 1.390e-93
Identity = 140/218 (64.22%), Postives = 175/218 (80.28%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKERSSK--CDWYDGPSLIELLDGVKIPSRDDEAALRMPISDR 648
            IL+L+  VD RTI KY +EAK K+RESW++A+IMD +++EREKGKTVEVGRAHFET++ R TILDAPGHKSYVPNMI GASQADV VLVISAR+GEFETG++RGGQTREH  LAKTLGVS+L+V VNKMD+PTV W KER+DEI  ++  FL+ +    KK ++++PIS L G N+K R  K  C W+DGP L E+LD +++P RD + + RMPI DR
Sbjct:  100 ILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEEREKGKTVEVGRAHFETETSRFTILDAPGHKSYVPNMISGASQADVGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVNWSKERYDEIGSKMVPFLKASGYNVKKDVQFLPISGLIGLNIKTRLDKSVCSWWDGPCLFEVLDSIELPLRDPKGSFRMPIIDR 317
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BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: A0A2R6WDW0_MARPO (Tr-type G domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WDW0_MARPO)

HSP 1 Score: 294 bits (753), Expect = 2.280e-93
Identity = 146/218 (66.97%), Postives = 177/218 (81.19%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKERSSK--CDWYDGPSLIELLDGVKIPSRDDEAALRMPISDR 648
            ILYL+ MVD+RTI KY REAK KNRESW++A+IMD +++ER KGKTVEVGRAHFET   R TILDAPGHK+YVPNMI GASQADV VLVISAR+GEFETGF+RGGQTREHA LAKTLGVS+L+VAVNKMD+ +VEW KERFDEI++++  FL+      KK ++++PIS L G N+KER  K  C+W+DGPSL E LD V++P RD     RMP+ D+
Sbjct:  213 ILYLSGMVDERTIQKYEREAKEKNRESWYMAYIMDTNEEERAKGKTVEVGRAHFETAKSRFTILDAPGHKNYVPNMITGASQADVGVLVISARKGEFETGFERGGQTREHAQLAKTLGVSKLLVAVNKMDDLSVEWAKERFDEIEKKMLPFLKACGYNAKKDVQFLPISGLLGVNMKERMGKTPCNWWDGPSLFEALDNVELPLRDPNGPFRMPLIDK 430
[Close]
BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Match: A0A1D6J4R2_MAIZE (Translation elongation factor EF1A/initiation factor IF2gamma family protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6J4R2_MAIZE)

HSP 1 Score: 288 bits (736), Expect = 2.860e-93
Identity = 138/218 (63.30%), Postives = 176/218 (80.73%), Query Frame = 1 
Query:    1 ILYLTEMVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFETKSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQTREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETAGFKKKYIEYVPISALTGDNVKERSSK--CDWYDGPSLIELLDGVKIPSRDDEAALRMPISDR 648
            IL+L+  VD RTI KY +EAK K+RESW++A+IMD +++ER KGKTVEVGRAHFET+  R TILDAPGHKSYVPNMI GASQAD+ VLVISAR+GEFETG++RGGQTREH LLAKTLGV++LVV +NKMDEPTV+W KER+DEI+ ++  FL+ +    KK ++++PIS L G N+K R  K  C W+DGP L E+LD + +P RD + ++RMPI D+
Sbjct:  118 ILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEHTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLVVVINKMDEPTVKWSKERYDEIEAKMVPFLKSSGYNVKKDVQFLPISGLVGTNMKTRMDKSICSWWDGPCLFEVLDRIVVPLRDPKGSVRMPIIDK 335
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103540.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E3Y2_CAFRO6.920e-10172.02Tr-type G domain-containing protein n=4 Tax=Cafete... [more]
A0A7S0JXH3_CAFRO6.290e-9871.56Chorismate synthase n=1 Tax=Cafeteria roenbergensi... [more]
A0A7S2AF42_9DINO2.960e-9464.19Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
B8LNF8_PICSI5.300e-9464.22Tr-type G domain-containing protein n=1 Tax=Picea ... [more]
A0A804MI10_MAIZE6.290e-9463.76Tr-type G domain-containing protein n=2 Tax=Zea ma... [more]
A0A7S3WXR7_9SPIT1.020e-9363.26Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A1D6J4S1_MAIZE1.300e-9363.30Translation elongation factor EF1A/initiation fact... [more]
A0A540LWA7_MALBA1.390e-9364.22Tr-type G domain-containing protein n=1 Tax=Malus ... [more]
A0A2R6WDW0_MARPO2.280e-9366.97Tr-type G domain-containing protein n=2 Tax=Marcha... [more]
A0A1D6J4R2_MAIZE2.860e-9363.30Translation elongation factor EF1A/initiation fact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103540contigM-pyrifera_M_contig103540:5..652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score287.0
Seed ortholog evalue7.3e-75
Seed eggNOG ortholog42345.XP_008786579.1
KEGG koko:K03267
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006464,GO:0006479,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018444,GO:0019538,GO:0022411,GO:0032259,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs37KE5@33090,3GF38@35493,3KMPF@4447,COG5256@1,KOG0459@2759
Ec32 ortholog descriptionHBS1, eRF3-like GTPase involved in mRNA "no-go decay"
Ec32 orthologEc-27_000780.1
COG Functional cat.J
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03019
Exons1
Model size648
Cds size630
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.1205409-UTR-M-pyrifera_M_contig103540:4..221622815541.1205409-UTR-M-pyrifera_M_contig103540:4..22Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103540 5..22 +
1692277455.657251-UTR-M-pyrifera_M_contig103540:4..221692277455.657251-UTR-M-pyrifera_M_contig103540:4..22Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103540 5..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.1362848-CDS-M-pyrifera_M_contig103540:22..6521622815541.1362848-CDS-M-pyrifera_M_contig103540:22..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103540 23..652 +
1692277455.6712017-CDS-M-pyrifera_M_contig103540:22..6521692277455.6712017-CDS-M-pyrifera_M_contig103540:22..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103540 23..652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103540.754.1prot_M-pyrifera_M_contig103540.754.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103540 23..652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103540.754.1

>prot_M-pyrifera_M_contig103540.754.1 ID=prot_M-pyrifera_M_contig103540.754.1|Name=mRNA_M-pyrifera_M_contig103540.754.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
MVDQRTIDKYTREAKTKNRESWFLAFIMDIDDDEREKGKTVEVGRAHFET
KSKRITILDAPGHKSYVPNMIQGASQADVAVLVISARRGEFETGFDRGGQ
TREHALLAKTLGVSRLVVAVNKMDEPTVEWDKERFDEIKERLQKFLRETA
GFKKKYIEYVPISALTGDNVKERSSKCDWYDGPSLIELLDGVKIPSRDDE
AALRMPISDR
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mRNA from alignment at M-pyrifera_M_contig103540:5..652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103540.754.1 ID=mRNA_M-pyrifera_M_contig103540.754.1|Name=mRNA_M-pyrifera_M_contig103540.754.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig103540:5..652+ (Macrocystis pyrifera P11B4 male)
ATCTTGTACTTGACAGAAATGGTGGATCAACGAACCATTGACAAGTACAC
GAGAGAAGCAAAGACAAAGAACCGAGAGTCTTGGTTCTTGGCTTTTATTA
TGGACATTGATGATGATGAACGTGAAAAAGGAAAGACTGTGGAAGTTGGA
CGAGCGCACTTTGAAACCAAGAGCAAGAGAATCACCATTCTTGATGCACC
AGGGCATAAGAGCTATGTTCCAAACATGATCCAAGGTGCTTCACAAGCAG
ATGTTGCAGTGTTGGTGATTTCTGCAAGACGTGGAGAGTTTGAAACTGGG
TTCGATCGTGGTGGTCAAACACGTGAGCATGCATTGCTTGCAAAGACATT
GGGAGTGTCAAGGTTGGTTGTAGCAGTGAACAAGATGGATGAACCAACTG
TAGAATGGGACAAGGAACGATTTGATGAAATCAAGGAACGTCTACAAAAG
TTTTTGCGTGAAACCGCTGGGTTCAAGAAGAAGTACATTGAATACGTGCC
AATTTCCGCATTGACTGGAGACAATGTGAAGGAACGATCAAGCAAGTGTG
ATTGGTATGATGGCCCATCGTTGATTGAACTTTTGGATGGTGTCAAGATT
CCATCACGTGACGACGAAGCCGCACTTCGCATGCCAATTTCAGACCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103540:5..652+

>mRNA_M-pyrifera_M_contig103540.754.1 ID=mRNA_M-pyrifera_M_contig103540.754.1|Name=mRNA_M-pyrifera_M_contig103540.754.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig103540:5..652+ (Macrocystis pyrifera P11B4 male)
ATGGTGGATCAACGAACCATTGACAAGTACACGAGAGAAGCAAAGACAAA
GAACCGAGAGTCTTGGTTCTTGGCTTTTATTATGGACATTGATGATGATG
AACGTGAAAAAGGAAAGACTGTGGAAGTTGGACGAGCGCACTTTGAAACC
AAGAGCAAGAGAATCACCATTCTTGATGCACCAGGGCATAAGAGCTATGT
TCCAAACATGATCCAAGGTGCTTCACAAGCAGATGTTGCAGTGTTGGTGA
TTTCTGCAAGACGTGGAGAGTTTGAAACTGGGTTCGATCGTGGTGGTCAA
ACACGTGAGCATGCATTGCTTGCAAAGACATTGGGAGTGTCAAGGTTGGT
TGTAGCAGTGAACAAGATGGATGAACCAACTGTAGAATGGGACAAGGAAC
GATTTGATGAAATCAAGGAACGTCTACAAAAGTTTTTGCGTGAAACCGCT
GGGTTCAAGAAGAAGTACATTGAATACGTGCCAATTTCCGCATTGACTGG
AGACAATGTGAAGGAACGATCAAGCAAGTGTGATTGGTATGATGGCCCAT
CGTTGATTGAACTTTTGGATGGTGTCAAGATTCCATCACGTGACGACGAA
GCCGCACTTCGCATGCCAATTTCAGACCGCATGGTGGATCAACGAACCAT
TGACAAGTACACGAGAGAAGCAAAGACAAAGAACCGAGAGTCTTGGTTCT
TGGCTTTTATTATGGACATTGATGATGATGAACGTGAAAAAGGAAAGACT
GTGGAAGTTGGACGAGCGCACTTTGAAACCAAGAGCAAGAGAATCACCAT
TCTTGATGCACCAGGGCATAAGAGCTATGTTCCAAACATGATCCAAGGTG
CTTCACAAGCAGATGTTGCAGTGTTGGTGATTTCTGCAAGACGTGGAGAG
TTTGAAACTGGGTTCGATCGTGGTGGTCAAACACGTGAGCATGCATTGCT
TGCAAAGACATTGGGAGTGTCAAGGTTGGTTGTAGCAGTGAACAAGATGG
ATGAACCAACTGTAGAATGGGACAAGGAACGATTTGATGAAATCAAGGAA
CGTCTACAAAAGTTTTTGCGTGAAACCGCTGGGTTCAAGAAGAAGTACAT
TGAATACGTGCCAATTTCCGCATTGACTGGAGACAATGTGAAGGAACGAT
CAAGCAAGTGTGATTGGTATGATGGCCCATCGTTGATTGAACTTTTGGAT
GGTGTCAAGATTCCATCACGTGACGACGAAGCCGCACTTCGCATGCCAAT
TTCAGACCGC
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