mRNA_M-pyrifera_M_contig103514.750.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103514.750.1
Unique NamemRNA_M-pyrifera_M_contig103514.750.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103514.750.1 vs. uniprot
Match: A0A7X5WS34_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WS34_9ACTN)

HSP 1 Score: 151 bits (381), Expect = 1.430e-43
Identity = 86/167 (51.50%), Postives = 112/167 (67.07%), Query Frame = 1 
Query:   10 VVAAIMLLAAGCGDD-----------GDASPFGPG----DLGSSDAADDA-ASDLLEDLADGSLDEGDLDDLMDSAEDMMESFGGEGSGTATVNGDTIEFTSEVCFAGQGDFTLEGPGTSSDGTPVWVSISHTVESREELAEFMDDDMIDTIYGDADPIISSQVFIE 462
            VVA + LLAAGCG D           GD + FG G    DLG  +        ++ ED+  G   E  + DL+++AED+ ESFG +G GT  +NG+TIEFTSE+CFAG GDFT+EG G + DGTPVWVSISH+ +SREE+ EFMD++M++ +YGDADPII S V +E
Sbjct:   10 VVALLALLAAGCGGDDGGPSLRDVAGGDGNGFGDGGDEPDLGDLEELTGVDIGEIAEDILSGEDPEEAMADLLENAEDLAESFGDDGRGTIEINGETIEFTSEICFAGFGDFTIEGLGAAGDGTPVWVSISHSEQSREEMLEFMDEEMVELLYGDADPIIDSSVSVE 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103514.750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X5WS34_9ACTN1.430e-4351.50Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103514contigM-pyrifera_M_contig103514:4..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size462
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.9371874-CDS-M-pyrifera_M_contig103514:3..4591622815540.9371874-CDS-M-pyrifera_M_contig103514:3..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103514 4..459 -
1692277455.5881286-CDS-M-pyrifera_M_contig103514:3..4591692277455.5881286-CDS-M-pyrifera_M_contig103514:3..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103514 4..459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.952318-UTR-M-pyrifera_M_contig103514:459..4651622815540.952318-UTR-M-pyrifera_M_contig103514:459..465Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103514 460..465 -
1692277455.5987558-UTR-M-pyrifera_M_contig103514:459..4651692277455.5987558-UTR-M-pyrifera_M_contig103514:459..465Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103514 460..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103514.750.1prot_M-pyrifera_M_contig103514.750.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103514 4..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103514.750.1

>prot_M-pyrifera_M_contig103514.750.1 ID=prot_M-pyrifera_M_contig103514.750.1|Name=mRNA_M-pyrifera_M_contig103514.750.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MVVAAIMLLAAGCGDDGDASPFGPGDLGSSDAADDAASDLLEDLADGSLD
EGDLDDLMDSAEDMMESFGGEGSGTATVNGDTIEFTSEVCFAGQGDFTLE
GPGTSSDGTPVWVSISHTVESREELAEFMDDDMIDTIYGDADPIISSQVF
IE
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mRNA from alignment at M-pyrifera_M_contig103514:4..465-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103514.750.1 ID=mRNA_M-pyrifera_M_contig103514.750.1|Name=mRNA_M-pyrifera_M_contig103514.750.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig103514:4..465- (Macrocystis pyrifera P11B4 male)
GCAGCAATGGTGGTGGCGGCAATCATGCTCCTGGCGGCGGGATGCGGCGA
TGACGGCGATGCGAGCCCATTCGGGCCCGGCGACCTGGGATCGTCCGACG
CAGCCGACGACGCGGCGAGCGACCTCCTCGAGGACCTCGCCGACGGTTCG
CTCGACGAGGGCGACCTCGACGATCTCATGGACTCAGCCGAAGACATGAT
GGAGAGCTTCGGCGGCGAGGGCTCCGGCACCGCGACGGTCAACGGCGACA
CGATCGAGTTCACGTCCGAGGTCTGCTTCGCCGGCCAGGGCGACTTCACG
CTCGAAGGGCCGGGCACCAGCAGCGACGGCACGCCGGTGTGGGTGTCGAT
CAGCCACACCGTCGAGAGCCGTGAGGAACTCGCCGAGTTCATGGACGACG
ACATGATCGACACGATCTACGGCGATGCCGACCCGATCATCTCTTCCCAG
GTGTTCATCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103514:4..465-

>mRNA_M-pyrifera_M_contig103514.750.1 ID=mRNA_M-pyrifera_M_contig103514.750.1|Name=mRNA_M-pyrifera_M_contig103514.750.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig103514:4..465- (Macrocystis pyrifera P11B4 male)
ATGGTGGTGGCGGCAATCATGCTCCTGGCGGCGGGATGCGGCGATGACGG
CGATGCGAGCCCATTCGGGCCCGGCGACCTGGGATCGTCCGACGCAGCCG
ACGACGCGGCGAGCGACCTCCTCGAGGACCTCGCCGACGGTTCGCTCGAC
GAGGGCGACCTCGACGATCTCATGGACTCAGCCGAAGACATGATGGAGAG
CTTCGGCGGCGAGGGCTCCGGCACCGCGACGGTCAACGGCGACACGATCG
AGTTCACGTCCGAGGTCTGCTTCGCCGGCCAGGGCGACTTCACGCTCGAA
GGGCCGGGCACCAGCAGCGACGGCACGCCGGTGTGGGTGTCGATCAGCCA
CACCGTCGAGAGCCGTGAGGAACTCGCCGAGTTCATGGACGACGACATGA
TCGACACGATCTACGGCGATGCCGACCCGATCATCTCTTCCCAGGTGTTC
ATCGAGATGGTGGTGGCGGCAATCATGCTCCTGGCGGCGGGATGCGGCGA
TGACGGCGATGCGAGCCCATTCGGGCCCGGCGACCTGGGATCGTCCGACG
CAGCCGACGACGCGGCGAGCGACCTCCTCGAGGACCTCGCCGACGGTTCG
CTCGACGAGGGCGACCTCGACGATCTCATGGACTCAGCCGAAGACATGAT
GGAGAGCTTCGGCGGCGAGGGCTCCGGCACCGCGACGGTCAACGGCGACA
CGATCGAGTTCACGTCCGAGGTCTGCTTCGCCGGCCAGGGCGACTTCACG
CTCGAAGGGCCGGGCACCAGCAGCGACGGCACGCCGGTGTGGGTGTCGAT
CAGCCACACCGTCGAGAGCCGTGAGGAACTCGCCGAGTTCATGGACGACG
ACATGATCGACACGATCTACGGCGATGCCGACCCGATCATCTCTTCCCAG
GTGTTCATCGAG
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