mRNA_M-pyrifera_M_contig103513.749.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103513.749.1
Unique NamemRNA_M-pyrifera_M_contig103513.749.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103513.749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103513contigM-pyrifera_M_contig103513:121..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.7747495-UTR-M-pyrifera_M_contig103513:120..1231622815540.7747495-UTR-M-pyrifera_M_contig103513:120..123Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103513 121..123 +
1692277455.565217-UTR-M-pyrifera_M_contig103513:120..1231692277455.565217-UTR-M-pyrifera_M_contig103513:120..123Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103513 121..123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.823158-CDS-M-pyrifera_M_contig103513:123..4351622815540.823158-CDS-M-pyrifera_M_contig103513:123..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103513 124..435 +
1692277455.5757437-CDS-M-pyrifera_M_contig103513:123..4351692277455.5757437-CDS-M-pyrifera_M_contig103513:123..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103513 124..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103513.749.1prot_M-pyrifera_M_contig103513.749.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103513 124..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103513.749.1

>prot_M-pyrifera_M_contig103513.749.1 ID=prot_M-pyrifera_M_contig103513.749.1|Name=mRNA_M-pyrifera_M_contig103513.749.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MVYCGAKTGVIPDLVADYTLTLASHPSRAPELYLHSPTDPLCPPEPVHAI
AEARKASGVDVSEILFPPAPHVQLLRRHQALYTEAVHAFLEKTLRKPEKT
TTK*
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mRNA from alignment at M-pyrifera_M_contig103513:121..435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103513.749.1 ID=mRNA_M-pyrifera_M_contig103513.749.1|Name=mRNA_M-pyrifera_M_contig103513.749.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig103513:121..435+ (Macrocystis pyrifera P11B4 male)
GGCATGGTGTATTGCGGGGCGAAAACCGGCGTTATACCCGACCTCGTCGC
AGACTACACCCTCACGCTCGCCTCCCACCCCTCCAGAGCGCCCGAACTCT
ACCTCCACTCCCCGACAGACCCGCTCTGCCCCCCCGAGCCCGTCCACGCC
ATCGCAGAGGCCCGCAAGGCCAGCGGAGTCGACGTCTCCGAAATCCTATT
CCCGCCTGCCCCGCACGTGCAGCTCCTCAGGCGGCACCAGGCGCTCTACA
CCGAAGCCGTGCACGCATTCCTCGAAAAAACACTCCGAAAACCCGAGAAA
ACCACAACAAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103513:121..435+

>mRNA_M-pyrifera_M_contig103513.749.1 ID=mRNA_M-pyrifera_M_contig103513.749.1|Name=mRNA_M-pyrifera_M_contig103513.749.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig103513:121..435+ (Macrocystis pyrifera P11B4 male)
ATGGTGTATTGCGGGGCGAAAACCGGCGTTATACCCGACCTCGTCGCAGA
CTACACCCTCACGCTCGCCTCCCACCCCTCCAGAGCGCCCGAACTCTACC
TCCACTCCCCGACAGACCCGCTCTGCCCCCCCGAGCCCGTCCACGCCATC
GCAGAGGCCCGCAAGGCCAGCGGAGTCGACGTCTCCGAAATCCTATTCCC
GCCTGCCCCGCACGTGCAGCTCCTCAGGCGGCACCAGGCGCTCTACACCG
AAGCCGTGCACGCATTCCTCGAAAAAACACTCCGAAAACCCGAGAAAACC
ACAACAAAGTGAATGGTGTATTGCGGGGCGAAAACCGGCGTTATACCCGA
CCTCGTCGCAGACTACACCCTCACGCTCGCCTCCCACCCCTCCAGAGCGC
CCGAACTCTACCTCCACTCCCCGACAGACCCGCTCTGCCCCCCCGAGCCC
GTCCACGCCATCGCAGAGGCCCGCAAGGCCAGCGGAGTCGACGTCTCCGA
AATCCTATTCCCGCCTGCCCCGCACGTGCAGCTCCTCAGGCGGCACCAGG
CGCTCTACACCGAAGCCGTGCACGCATTCCTCGAAAAAACACTCCGAAAA
CCCGAGAAAACCACAACAAAGTGA
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