mRNA_M-pyrifera_M_contig103505.746.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103505.746.1
Unique NamemRNA_M-pyrifera_M_contig103505.746.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: A0A6L7V9V2_9BACT (Uncharacterized protein n=1 Tax=Holophagales bacterium TaxID=2478486 RepID=A0A6L7V9V2_9BACT)

HSP 1 Score: 124 bits (312), Expect = 5.010e-33
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   91 PVILDLDGDGVEY---SEIPVLFDVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDELG 444
            P++LDLDGDGVE     E    FD+N D  +   AW   DDGFLA+DKDGDGQI+  DE++F SY  GA+TDLEGL  FD     +LD +D +WS F VWQD + +G SD  EL SLDE G
Sbjct:   41 PIVLDLDGDGVELVPLEESTAFFDINGDGYRERMAWASADDGFLAYDKDGDGQIAAHDELSFVSYVEGARTDLEGLRHFDXXXXXQLDPDDAEWSLFRVWQDLDQDGESDPAELRSLDEEG 161          
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: A0A8D5FVF4_9DELT (Uncharacterized protein n=2 Tax=Desulfomarina profundi TaxID=2772557 RepID=A0A8D5FVF4_9DELT)

HSP 1 Score: 131 bits (329), Expect = 1.120e-32
Identity = 66/124 (53.23%), Postives = 84/124 (67.74%), Query Frame = 1
Query:   76 VTNIPPVILDLDGDGVEYSEIP--VLFDVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDEL 441
            V +  PV+LDLDGDGVE   +   + FD N D     + W+G DDGFL +D D D Q++Q DE++   Y+PGA TDLEGL AFDSN + + D  D  W++F VWQD+N NGV+D GE SSLDEL
Sbjct:  349 VYHYTPVVLDLDGDGVELLNVSENIKFDWNLDGKAEATGWIGHDDGFLVYDYDHDRQVNQPDELSLRQYSPGAATDLEGLRAFDSNGDGRFDKTDTGWNDFGVWQDKNSNGVTDMGEFSSLDEL 472          
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: UPI0013D69919 (FG-GAP-like repeat-containing protein n=1 Tax=Spartinivicinus ruber TaxID=2683272 RepID=UPI0013D69919)

HSP 1 Score: 127 bits (320), Expect = 2.470e-31
Identity = 66/129 (51.16%), Postives = 87/129 (67.44%), Query Frame = 1
Query:   61 TMTINVT---NIPPVILDLDGDGVEYSEI--PVLFDVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSL 432
            T TIN+     IPPV++DLDGDGVE+  +  P  FDV  D    ++AW G DD  L +D++GDGQ+S   E  FT Y  GA TDL GLH FD+NNN +LD++D+ +S F +WQD+NLNG  D GE ++L
Sbjct:  953 TETINIRVAPTIPPVVIDLDGDGVEFISLQTPYQFDVTGDGQANYTAWAGADDAILVYDRNGDGQVSSPLEFQFTHYLEGATTDLAGLHYFDTNNNQQLDSSDEAFSAFHLWQDRNLNGQVDTGEWNAL 1081          
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: A0A7V5R705_9DELT (Tandem-95 repeat protein n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A7V5R705_9DELT)

HSP 1 Score: 127 bits (319), Expect = 3.290e-31
Identity = 66/120 (55.00%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   91 PVILDLDGDGVEYSEIP--VLFDVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDELG 444
            PVI+DLDGDGVE   I   V+FD N D     S W   DDGFL +D + D QI++ DE+    Y PGA+TDLEGL AFDSN +     ND  W++F VWQD+N NG++DEGE  SLDELG
Sbjct:  607 PVIMDLDGDGVELLGIEEGVVFDWNRDGDAEASGWAAGDDGFLVYDYNQDAQITRADELMLREYLPGAETDLEGLRAFDSNEDGIFSGNDTSWNDFGVWQDRNSNGLTDEGEFHSLDELG 726          
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: UPI0009E7D3A6 (hypothetical protein n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=UPI0009E7D3A6)

HSP 1 Score: 126 bits (317), Expect = 6.610e-31
Identity = 69/141 (48.94%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   37 GELYSVPFTMTINVTN--IPPVILDLDGDGVE---YSEIPVLFDVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDELG 444
            G   +VPF++T    N  +PP++LDLDGDG+E   Y+   + FD+++D     + WV  DDGFLA D++ +G I  + EI+F +    A TDLEGL AFDSN N  LD  D ++ EF VWQD N NGVSD GEL SL E G
Sbjct: 4310 GRTTAVPFSVTFMRRNSSVPPIVLDLDGDGIELVDYATSSISFDMDSDGAADRTGWVAADDGFLALDRNANGAIDDISEISFINDAANALTDLEGLRAFDSNENGLLDAGDARFGEFLVWQDANQNGVSDTGELKSLTEAG 4450          
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: M1NB21_DESSD (Cadherin domain-containing protein n=2 Tax=Desulfocapsa TaxID=53318 RepID=M1NB21_DESSD)

HSP 1 Score: 126 bits (316), Expect = 8.540e-31
Identity = 65/120 (54.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   91 PVILDLDGDGVEYSEIP--VLFDVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDELG 444
            PVILDLDGDGVE   I   V FD N D     S WV  DDGFL +D + DG +++ DE+    Y PGA TDLEGL AFDSNN+      D  WS+F +WQD+N NG+SDEGE  +LD+ G
Sbjct:  988 PVILDLDGDGVELLGIEEGVTFDWNRDTIAESSGWVAADDGFLVYDHNHDGAVTRADELMLKEYLPGATTDLEGLQAFDSNNDGIFSKEDAAWSDFGIWQDKNSNGISDEGEFKTLDDAG 1107          
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: UPI001988AE4C (Tandem-95 repeat protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=UPI001988AE4C)

HSP 1 Score: 125 bits (314), Expect = 1.610e-30
Identity = 76/172 (44.19%), Postives = 108/172 (62.79%), Query Frame = 1
Query:    1 ANY---ANFDFEVHDGELYSVPFTMTINVTNIP----------------PVILDLDGDGVEYSEIP---VLFDVNAD--VGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDELG 444
            ANY   A+F + + DG++ SV  T  I V ++                 PV+LDLDGDG+E + I    VLFD+N D  + KL   WVG DDG LA+D DG+G I   +EI+F  Y  GA+TDLEGL AFDSN++  LD +D +WS+F VW+D + +G++D+GE ++L ++G
Sbjct: 1252 ANYYGAASFQYTLSDGQV-SVTGTANITVNDVAEPSSGXXXXXXXXXXKPVVLDLDGDGLELTAIDEKSVLFDINDDGFLDKL--GWVGGDDGLLAYDYDGNGVIEHGNEISFAQYLDGARTDLEGLKAFDSNHDGALDGDDAEWSKFGVWRDADGDGITDQGEFNNLTDMG 1420          
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: A0A7Y8JEW9_9RHOO (Cadherin_4 domain-containing protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7Y8JEW9_9RHOO)

HSP 1 Score: 125 bits (314), Expect = 1.620e-30
Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   91 PVILDLDGDGVEYSEIP---VLFDVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDELG 444
            P+ +DL+G+G E+  +    V FDVN D  K  +AW+G+DDG LA+D DGDG+I +  EI+F  Y  GAQ+DLEGL AFDSN + +    DD+W++F VWQD N NGV+D GE  +L E+G
Sbjct:  286 PIAVDLNGNGFEFVNVDDSNVFFDVNGDGWKRRTAWIGKDDGLLAYDIDGDGKIDKPGEISFARYKDGAQSDLEGLRAFDSNGDGRFSALDDKWAKFGVWQDANQNGVTDPGEFRTLSEMG 406          
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: UPI0012E9D762 (hypothetical protein n=1 Tax=Caldimonas manganoxidans TaxID=196015 RepID=UPI0012E9D762)

HSP 1 Score: 124 bits (311), Expect = 4.180e-30
Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   91 PVILDLDGDGVEYSEIP---VLFDVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDELG 444
            P+ +DL+G+G E+  +    V FDVN D  K  +AW+G+DDG LA+D DGDG+I +  EI+F  Y  GAQ+DLEGL AFDSN + +    DD+W++F VWQD N NGV+D GE  +L E+G
Sbjct: 1297 PIAVDLNGNGFEFVNVDDSNVFFDVNGDGWKRRTAWIGKDDGLLAYDIDGDGKIDKPGEISFARYQDGAQSDLEGLSAFDSNGDGRFSALDDKWAKFGVWQDANGNGVTDPGEFRTLSEMG 1417          
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Match: A0A7V7F2Z7_9DELT (Cadherin-like domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V7F2Z7_9DELT)

HSP 1 Score: 123 bits (308), Expect = 1.050e-29
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   91 PVILDLDGDGVEYSEIP---VLFDVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDLEGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDELG 444
            P+ LDL+G+G E+ ++    V FDVN D  K  ++WV   DG LA+D DG+G+I   +EI+FT Y PGAQTDLEGL AFDSN +      DD WS+F VWQD + +GV+D GE  +LD++G
Sbjct:  568 PIALDLNGNGFEFVDLDDSNVFFDVNGDGWKERTSWVAPGDGLLAYDADGNGKIEHAEEISFTGYKPGAQTDLEGLQAFDSNGDGFFSAADDNWSKFGVWQDADQDGVTDLGEFRTLDDMG 688          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103505.746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7V9V2_9BACT5.010e-3354.55Uncharacterized protein n=1 Tax=Holophagales bacte... [more]
A0A8D5FVF4_9DELT1.120e-3253.23Uncharacterized protein n=2 Tax=Desulfomarina prof... [more]
UPI0013D699192.470e-3151.16FG-GAP-like repeat-containing protein n=1 Tax=Spar... [more]
A0A7V5R705_9DELT3.290e-3155.00Tandem-95 repeat protein n=1 Tax=Desulfobulbaceae ... [more]
UPI0009E7D3A66.610e-3148.94hypothetical protein n=2 Tax=Sphingomonadaceae Tax... [more]
M1NB21_DESSD8.540e-3154.17Cadherin domain-containing protein n=2 Tax=Desulfo... [more]
UPI001988AE4C1.610e-3044.19Tandem-95 repeat protein n=1 Tax=Rhodospirillaceae... [more]
A0A7Y8JEW9_9RHOO1.620e-3051.24Cadherin_4 domain-containing protein n=1 Tax=Rhodo... [more]
UPI0012E9D7624.180e-3051.24hypothetical protein n=1 Tax=Caldimonas manganoxid... [more]
A0A7V7F2Z7_9DELT1.050e-2951.24Cadherin-like domain-containing protein n=1 Tax=De... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103505contigM-pyrifera_M_contig103505:209..652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score131.0
Seed ortholog evalue4.7e-28
Seed eggNOG ortholog1282876.BAOK01000001_gene3542
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG2931 RTX toxins and related Ca2 -binding proteins
EggNOG OGs1MU7T@1224,2TRVY@28211,4BRHM@82117,COG0689@1,COG0689@2,COG2931@1,COG2931@2
COG Functional cat.Q
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.6602776-CDS-M-pyrifera_M_contig103505:208..6521622815540.6602776-CDS-M-pyrifera_M_contig103505:208..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103505 209..652 +
1692277455.5191772-CDS-M-pyrifera_M_contig103505:208..6521692277455.5191772-CDS-M-pyrifera_M_contig103505:208..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103505 209..652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103505.746.1prot_M-pyrifera_M_contig103505.746.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103505 209..652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103505.746.1

>prot_M-pyrifera_M_contig103505.746.1 ID=prot_M-pyrifera_M_contig103505.746.1|Name=mRNA_M-pyrifera_M_contig103505.746.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
ANYANFDFEVHDGELYSVPFTMTINVTNIPPVILDLDGDGVEYSEIPVLF
DVNADVGKLFSAWVGQDDGFLAFDKDGDGQISQLDEIAFTSYTPGAQTDL
EGLHAFDSNNNFKLDNNDDQWSEFSVWQDQNLNGVSDEGELSSLDELG
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mRNA from alignment at M-pyrifera_M_contig103505:209..652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103505.746.1 ID=mRNA_M-pyrifera_M_contig103505.746.1|Name=mRNA_M-pyrifera_M_contig103505.746.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig103505:209..652+ (Macrocystis pyrifera P11B4 male)
GCTAATTATGCCAACTTTGATTTTGAAGTCCATGATGGCGAACTCTACAG TGTACCTTTTACCATGACAATTAACGTAACTAACATTCCACCAGTTATCT TAGACCTAGATGGTGACGGCGTTGAATACAGTGAAATACCGGTGTTGTTT GATGTAAACGCTGATGTAGGAAAATTATTCAGTGCTTGGGTGGGTCAAGA TGATGGTTTTCTCGCATTCGATAAAGATGGCGATGGTCAAATTTCCCAAT TGGATGAAATTGCCTTCACCAGTTACACACCAGGTGCGCAAACTGATTTA GAAGGATTACATGCTTTTGATTCAAACAACAACTTTAAATTAGATAATAA TGACGATCAGTGGTCCGAGTTTTCTGTTTGGCAAGATCAAAATTTAAACG GTGTAAGTGATGAGGGTGAATTATCAAGCCTAGATGAACTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103505:209..652+

>mRNA_M-pyrifera_M_contig103505.746.1 ID=mRNA_M-pyrifera_M_contig103505.746.1|Name=mRNA_M-pyrifera_M_contig103505.746.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig103505:209..652+ (Macrocystis pyrifera P11B4 male)
GCTAATTATGCCAACTTTGATTTTGAAGTCCATGATGGCGAACTCTACAG
TGTACCTTTTACCATGACAATTAACGTAACTAACATTCCACCAGTTATCT
TAGACCTAGATGGTGACGGCGTTGAATACAGTGAAATACCGGTGTTGTTT
GATGTAAACGCTGATGTAGGAAAATTATTCAGTGCTTGGGTGGGTCAAGA
TGATGGTTTTCTCGCATTCGATAAAGATGGCGATGGTCAAATTTCCCAAT
TGGATGAAATTGCCTTCACCAGTTACACACCAGGTGCGCAAACTGATTTA
GAAGGATTACATGCTTTTGATTCAAACAACAACTTTAAATTAGATAATAA
TGACGATCAGTGGTCCGAGTTTTCTGTTTGGCAAGATCAAAATTTAAACG
GTGTAAGTGATGAGGGTGAATTATCAAGCCTAGATGAACTTGGCGCTAAT
TATGCCAACTTTGATTTTGAAGTCCATGATGGCGAACTCTACAGTGTACC
TTTTACCATGACAATTAACGTAACTAACATTCCACCAGTTATCTTAGACC
TAGATGGTGACGGCGTTGAATACAGTGAAATACCGGTGTTGTTTGATGTA
AACGCTGATGTAGGAAAATTATTCAGTGCTTGGGTGGGTCAAGATGATGG
TTTTCTCGCATTCGATAAAGATGGCGATGGTCAAATTTCCCAATTGGATG
AAATTGCCTTCACCAGTTACACACCAGGTGCGCAAACTGATTTAGAAGGA
TTACATGCTTTTGATTCAAACAACAACTTTAAATTAGATAATAATGACGA
TCAGTGGTCCGAGTTTTCTGTTTGGCAAGATCAAAATTTAAACGGTGTAA
GTGATGAGGGTGAATTATCAAGCCTAGATGAACTTGGC
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