mRNA_M-pyrifera_M_contig103501.744.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103501.744.1
Unique NamemRNA_M-pyrifera_M_contig103501.744.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103501.744.1 vs. uniprot
Match: UPI0004C00D9C (hypothetical protein n=1 Tax=unclassified Streptomyces TaxID=2593676 RepID=UPI0004C00D9C)

HSP 1 Score: 54.7 bits (130), Expect = 8.660e-7
Identity = 36/121 (29.75%), Postives = 60/121 (49.59%), Query Frame = 1 
Query:    1 VSFDLYFLPRPTGGPFDHTAAAERRRHTDATSNSDLVI--WDRIGHRLEIEMPTMESSPIDG-GRSYADAEVGVELLLTPGEIALSAPHDLAGVTVGDVIDMLRRAAAIVETVTGLVAYDP 354
            +S+D+YFL R  G P+D    A      D+   S  ++  W+RI  + +  +  +E +  +   R  + +  G++L +   E+++S P+   G     V   +   AAIVE  TGL AYDP
Sbjct:    1 MSYDIYFLNRRDGQPWDEVLKALEDEVGDSRPVSAHLLGAWERIVPQAQALLGEVEITEYEQESRDLSHSGTGIDLSVFGDEVSISVPYWHTGDDAAAVFGQVSALAAIVEKETGLTAYDP 121
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BLAST of mRNA_M-pyrifera_M_contig103501.744.1 vs. uniprot
Match: A0A3N1PZA9_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces sp. PanSC19 TaxID=1520455 RepID=A0A3N1PZA9_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 3.450e-5
Identity = 32/121 (26.45%), Postives = 59/121 (48.76%), Query Frame = 1 
Query:    1 VSFDLYFLPRPTGGPFDHT--AAAERRRHTDATSNSDLVIWDRIGHRLEIEMPTMESSPIDG-GRSYADAEVGVELLLTPGEIALSAPHDLAGVTVGDVIDMLRRAAAIVETVTGLVAYDP 354
            +S+D+YFL R  G P++    AA     + D      L  W RI  +  + +  ++ +  +   R  + ++ G++L +    ++++ P+   G     V+  L   +A+VE  TGL AYDP
Sbjct:    1 MSYDIYFLSRDEGQPWNDVLEAAQATAGNNDPIPAELLEAWQRIVPQARLLLGDVKITEYEQESRDLSHSDTGIDLSVFGDVVSITVPYWHTGDRAATVLSKLFALSALVEKETGLTAYDP 121
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103501.744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0004C00D9C8.660e-729.75hypothetical protein n=1 Tax=unclassified Streptom... [more]
A0A3N1PZA9_9ACTN3.450e-526.45Uncharacterized protein n=1 Tax=Streptomyces sp. P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103501contigM-pyrifera_M_contig103501:128..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.5897024-CDS-M-pyrifera_M_contig103501:127..5021622815540.5897024-CDS-M-pyrifera_M_contig103501:127..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103501 128..502 +
1692277455.4984303-CDS-M-pyrifera_M_contig103501:127..5021692277455.4984303-CDS-M-pyrifera_M_contig103501:127..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103501 128..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103501.744.1prot_M-pyrifera_M_contig103501.744.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103501 128..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103501.744.1

>prot_M-pyrifera_M_contig103501.744.1 ID=prot_M-pyrifera_M_contig103501.744.1|Name=mRNA_M-pyrifera_M_contig103501.744.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
VSFDLYFLPRPTGGPFDHTAAAERRRHTDATSNSDLVIWDRIGHRLEIEM
PTMESSPIDGGRSYADAEVGVELLLTPGEIALSAPHDLAGVTVGDVIDML
RRAAAIVETVTGLVAYDPVADASFL
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mRNA from alignment at M-pyrifera_M_contig103501:128..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103501.744.1 ID=mRNA_M-pyrifera_M_contig103501.744.1|Name=mRNA_M-pyrifera_M_contig103501.744.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig103501:128..502+ (Macrocystis pyrifera P11B4 male)
GTGAGTTTCGACCTCTACTTCCTTCCTCGCCCGACCGGCGGCCCGTTCGA
CCACACCGCCGCAGCCGAGCGTCGACGACACACCGACGCGACCTCCAACA
GCGACCTCGTGATCTGGGATCGGATCGGACACCGACTCGAGATCGAGATG
CCGACCATGGAGAGCTCACCGATCGACGGTGGCCGCTCCTACGCCGACGC
CGAGGTCGGCGTCGAACTCCTGCTGACGCCGGGCGAGATCGCTCTGTCGG
CGCCGCACGACCTCGCCGGCGTCACCGTCGGCGACGTGATCGACATGTTG
CGGCGAGCCGCCGCGATCGTCGAGACCGTCACCGGGCTCGTGGCCTACGA
TCCGGTCGCCGACGCCAGCTTCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103501:128..502+

>mRNA_M-pyrifera_M_contig103501.744.1 ID=mRNA_M-pyrifera_M_contig103501.744.1|Name=mRNA_M-pyrifera_M_contig103501.744.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig103501:128..502+ (Macrocystis pyrifera P11B4 male)
GTGAGTTTCGACCTCTACTTCCTTCCTCGCCCGACCGGCGGCCCGTTCGA
CCACACCGCCGCAGCCGAGCGTCGACGACACACCGACGCGACCTCCAACA
GCGACCTCGTGATCTGGGATCGGATCGGACACCGACTCGAGATCGAGATG
CCGACCATGGAGAGCTCACCGATCGACGGTGGCCGCTCCTACGCCGACGC
CGAGGTCGGCGTCGAACTCCTGCTGACGCCGGGCGAGATCGCTCTGTCGG
CGCCGCACGACCTCGCCGGCGTCACCGTCGGCGACGTGATCGACATGTTG
CGGCGAGCCGCCGCGATCGTCGAGACCGTCACCGGGCTCGTGGCCTACGA
TCCGGTCGCCGACGCCAGCTTCCTCGTGAGTTTCGACCTCTACTTCCTTC
CTCGCCCGACCGGCGGCCCGTTCGACCACACCGCCGCAGCCGAGCGTCGA
CGACACACCGACGCGACCTCCAACAGCGACCTCGTGATCTGGGATCGGAT
CGGACACCGACTCGAGATCGAGATGCCGACCATGGAGAGCTCACCGATCG
ACGGTGGCCGCTCCTACGCCGACGCCGAGGTCGGCGTCGAACTCCTGCTG
ACGCCGGGCGAGATCGCTCTGTCGGCGCCGCACGACCTCGCCGGCGTCAC
CGTCGGCGACGTGATCGACATGTTGCGGCGAGCCGCCGCGATCGTCGAGA
CCGTCACCGGGCTCGTGGCCTACGATCCGGTCGCCGACGCCAGCTTCCTC
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