mRNA_M-pyrifera_M_contig103490.739.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103490.739.1
Unique NamemRNA_M-pyrifera_M_contig103490.739.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: A0A7S4I6M4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I6M4_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 4.370e-32
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQII 270
            CCAIDY  HTL+QT +TLN +KLF SRVSIP  S KHFQS+ARRLYR+FAHC++HH  +F   E+E HLCERF+ F+ + +LV  K QII
Sbjct:  139 CCAIDYFIHTLKQTADTLNDTKLFHSRVSIPKGSAKHFQSMARRLYRLFAHCFYHHRDIFDVYEEEHHLCERFSKFICKYRLVPKKQQII 228
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BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: A0A507C114_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C114_9FUNG)

HSP 1 Score: 106 bits (264), Expect = 1.860e-26
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIPES 279
            CCA+DYI HTL+ TT  +NS K F SR+S+P+ S KHF +IARRLYRIFAH Y+HH  +F + E   HL  RF  F TR  L+  KL IIP S
Sbjct:  129 CCAMDYIIHTLDGTTALMNSPKFFPSRISMPEGSTKHFSNIARRLYRIFAHSYYHHREIFEEFEASTHLYARFLAFSTRFNLIQPKLIIIPRS 221
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BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: A0A024G0Y7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G0Y7_9STRA)

HSP 1 Score: 103 bits (258), Expect = 9.910e-26
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIPE 276
            CCA +YI HT++     L SS++F SR++I   + ++FQS+ARRLYRIF+H YFHH  +F Q+EDE+ LC RF  F T+  L+  KL IIPE
Sbjct:  114 CCAFEYILHTMDNVNTLLTSSRVFPSRIAISSNATQYFQSVARRLYRIFSHAYFHHADIFQQVEDEMFLCHRFVYFATQFCLIPKKLLIIPE 205
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BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: A0A8H4AX20_GIGMA (Mob1/phocein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A8H4AX20_GIGMA)

HSP 1 Score: 103 bits (258), Expect = 1.890e-25
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIPES 279
            CCAIDYI HTL+  T  LNS K F SR+SIP+TS+K++QSIARRLYRIFAH +FHH  +F   E+E  L  RF     R  LV   L IIP++
Sbjct:  125 CCAIDYIVHTLDGATTLLNSHKYFPSRISIPETSIKYYQSIARRLYRIFAHAWFHHREIFEAFENENQLYARFLKLSDRYGLVAKNLLIIPQN 217
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BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: U9UYT0_RHIID (Mob1/phocein n=6 Tax=Rhizophagus TaxID=1129544 RepID=U9UYT0_RHIID)

HSP 1 Score: 103 bits (258), Expect = 3.340e-25
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIP 273
            CCAIDYI HTL+  T  LNS K F SR+SIP+TS+KH+QSIARRLYRIFAH +FHH  +F   E+E  L  RF     R +L+   L IIP
Sbjct:  144 CCAIDYIVHTLDGATTLLNSHKYFPSRISIPETSLKHYQSIARRLYRIFAHTWFHHREIFEAFENENMLYARFLKLSDRYELIAKNLLIIP 234
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BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: A0A397TCU4_9GLOM (Mob1/phocein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TCU4_9GLOM)

HSP 1 Score: 103 bits (258), Expect = 3.540e-25
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIP 273
            CCAIDYI HTL+  T  LNS K F SR+SIP+TS+KH+QSIARRLYRIFAH +FHH  +F   E+E  L  RF     R +L+   L IIP
Sbjct:  144 CCAIDYIVHTLDGATTLLNSHKYFPSRISIPETSLKHYQSIARRLYRIFAHAWFHHREIFEAFENENMLYVRFLKLSERYELIAKNLLIIP 234
[Close]
BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: A0A2Z6RJ17_9GLOM (MOB-like protein phocein isoform X1 n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RJ17_9GLOM)

HSP 1 Score: 103 bits (256), Expect = 6.740e-25
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIP 273
            CCAIDYI HTL+  T  LNS K F SR++IP+TS+KH+QSIARRLYRIFAH +FHH  +F   E+E  L  RF     R +L+   L IIP
Sbjct:  143 CCAIDYIVHTLDGATTLLNSQKYFSSRITIPETSLKHYQSIARRLYRIFAHAWFHHREIFEAFENENMLYARFLKLSDRYELMAKNLLIIP 233
[Close]
BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: A0A397GI72_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GI72_9GLOM)

HSP 1 Score: 102 bits (254), Expect = 7.150e-25
Identity = 52/94 (55.32%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIPESF 282
            CCAIDYI HTL+  T  LNS + F SR+SIPDTS+KH+Q I+RRLYRIFAH +FHH  +F   E+E  L  RF     R  LV   L IIP ++
Sbjct:  119 CCAIDYIVHTLDGATTLLNSHRYFPSRISIPDTSLKHYQPISRRLYRIFAHAWFHHREIFESFENENMLYGRFLKLSDRYGLVAKNLLIIPNNY 212
[Close]
BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: A0A433DJ56_9FUNG (Mps one binder kinase activator-like 4-like protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DJ56_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 2.390e-24
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIPE 276
            CCAIDYI HTL+  +  LNS++ F SR+SIP+ S+KH+QSIARRLYRIFAH +FHH  +F   E+E  L  RF     + KLV  +L IIP+
Sbjct:  128 CCAIDYIVHTLDGASTLLNSNRFFPSRISIPEPSLKHYQSIARRLYRIFAHAWFHHREVFESYENESFLYARFLHLSRQYKLVSQQLIIIPD 219
[Close]
BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Match: F4S220_MELLP (Uncharacterized protein n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4S220_MELLP)

HSP 1 Score: 100 bits (250), Expect = 5.650e-24
Identity = 51/93 (54.84%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFAHCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIPES 279
            CCAIDYI HTL+  T  LNS++ F SR+ IP TS+KHF SIARRLYRIFAH +FHH  +F Q E E  L  RF     R  L+   L +IP +
Sbjct:  132 CCAIDYIVHTLDGATALLNSARYFPSRLQIPSTSIKHFTSIARRLYRIFAHAWFHHRDVFDQCETETSLYARFLALTDRFSLISEDLLVIPRT 224
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103490.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I6M4_9EUKA4.370e-3263.33Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A507C114_9FUNG1.860e-2656.99Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A024G0Y7_9STRA9.910e-2652.17Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8H4AX20_GIGMA1.890e-2556.99Mob1/phocein n=2 Tax=Gigaspora TaxID=4873 RepID=A0... [more]
U9UYT0_RHIID3.340e-2558.24Mob1/phocein n=6 Tax=Rhizophagus TaxID=1129544 Rep... [more]
A0A397TCU4_9GLOM3.540e-2558.24Mob1/phocein n=1 Tax=Glomus cerebriforme TaxID=658... [more]
A0A2Z6RJ17_9GLOM6.740e-2557.14MOB-like protein phocein isoform X1 n=1 Tax=Rhizop... [more]
A0A397GI72_9GLOM7.150e-2555.32Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A433DJ56_9FUNG2.390e-2455.43Mps one binder kinase activator-like 4-like protei... [more]
F4S220_MELLP5.650e-2454.84Uncharacterized protein n=1 Tax=Melampsora larici-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103490contigM-pyrifera_M_contig103490:2..573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score104.0
Seed ortholog evalue4.1e-20
Seed eggNOG ortholog588596.U9UYT0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mob1 family
EggNOG OGs38DCU@33154,3NXUN@4751,KOG1852@1,KOG1852@2759
COG Functional cat.D
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.358336-CDS-M-pyrifera_M_contig103490:1..1031622815540.358336-CDS-M-pyrifera_M_contig103490:1..103Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103490 2..103 -
1692277455.4010055-CDS-M-pyrifera_M_contig103490:1..1031692277455.4010055-CDS-M-pyrifera_M_contig103490:1..103Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103490 2..103 -
1622815540.3739483-CDS-M-pyrifera_M_contig103490:381..5731622815540.3739483-CDS-M-pyrifera_M_contig103490:381..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103490 382..573 -
1692277455.4161205-CDS-M-pyrifera_M_contig103490:381..5731692277455.4161205-CDS-M-pyrifera_M_contig103490:381..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103490 382..573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103490.739.1prot_M-pyrifera_M_contig103490.739.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103490 2..573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103490.739.1

>prot_M-pyrifera_M_contig103490.739.1 ID=prot_M-pyrifera_M_contig103490.739.1|Name=mRNA_M-pyrifera_M_contig103490.739.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
CCAIDYIKHTLEQTTETLNSSKLFRSRVSIPDTSVKHFQSIARRLYRIFA
HCYFHHEALFYQLEDELHLCERFTMFVTRQKLVGNKLQIIPESFARS*
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mRNA from alignment at M-pyrifera_M_contig103490:2..573-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103490.739.1 ID=mRNA_M-pyrifera_M_contig103490.739.1|Name=mRNA_M-pyrifera_M_contig103490.739.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=572bp|location=Sequence derived from alignment at M-pyrifera_M_contig103490:2..573- (Macrocystis pyrifera P11B4 male)
TGCTGTGCGATCGACTACATCAAACACACCCTTGAGCAAACAACAGAGAC
GCTGAACAGCAGCAAGCTGTTCAGGAGCAGGGTCTCCATTCCCGACACGT
CGGTCAAGCACTTCCAATCCATTGCCAGGCGACTCTACAGGATCTTCGCC
CATTGCTACTTCCACCATGAGGCCCTGTTCTACCAGCTCGAGGTATGCTC
TCACGACACATGAGGAGAGTTGGGCAGAAAGCGAGAGAGAGCGAGAGAAG
CAAGGGAGAGGGAGTGTTGGAGCTATGGAAAGGAGAGACAGAGAGGCAGA
GAGTGAGAGAGACAGATCATCACGCGAAGATTCAGCTGGGGGAGCGAGAG
GAGAGCGGGAGCGAGAGAGGGAGCGAGAGAGGGAGCGAGTGAGAGCGTTC
GGTCACGTGCAGCCATCTAGAGGAGAGAGAGAGGGGGGGAAGCTAGCTGG
AGACTCTCACACTGGTGCAGGATGAGCTGCACCTGTGTGAGCGGTTCACG
ATGTTCGTGACAAGGCAGAAGCTGGTGGGCAACAAGTTGCAGATCATCCC
CGAGTCCTTCGCGCGGTCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103490:2..573-

>mRNA_M-pyrifera_M_contig103490.739.1 ID=mRNA_M-pyrifera_M_contig103490.739.1|Name=mRNA_M-pyrifera_M_contig103490.739.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig103490:2..573- (Macrocystis pyrifera P11B4 male)
TGCTGTGCGATCGACTACATCAAACACACCCTTGAGCAAACAACAGAGAC
GCTGAACAGCAGCAAGCTGTTCAGGAGCAGGGTCTCCATTCCCGACACGT
CGGTCAAGCACTTCCAATCCATTGCCAGGCGACTCTACAGGATCTTCGCC
CATTGCTACTTCCACCATGAGGCCCTGTTCTACCAGCTCGAGTGCTGTGC
GATCGACTACATCAAACACACCCTTGAGCAAACAACAGAGACGCTGAACA
GCAGCAAGCTGTTCAGGAGCAGGGTCTCCATTCCCGACACGTCGGTCAAG
CACTTCCAATCCATTGCCAGGCGACTCTACAGGATCTTCGCCCATTGCTA
CTTCCACCATGAGGCCCTGTTCTACCAGCTCGAGGATGAGCTGCACCTGT
GTGAGCGGTTCACGATGTTCGTGACAAGGCAGAAGCTGGTGGGCAACAAG
TTGCAGATCATCCCCGAGTCCTTCGCGCGGTCCTAGGATGAGCTGCACCT
GTGTGAGCGGTTCACGATGTTCGTGACAAGGCAGAAGCTGGTGGGCAACA
AGTTGCAGATCATCCCCGAGTCCTTCGCGCGGTCCTAG
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