mRNA_M-pyrifera_M_contig10349.738.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10349.738.1
Unique NamemRNA_M-pyrifera_M_contig10349.738.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: D8LTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ1_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 6.460e-40
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELACLDDELDALEGLEEDTGPSYAAEPATLP 267
            MKDASKTLKA++KKIDINKVED+TDDMA      NEINDIMGRSYNVG+ELDEDDLDAELACLDDELDALEGLEEDTGPSY A+PA+LP
Sbjct:  182 MKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGPSYVAQPASLP 270
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: F0Y671_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y671_AURAN)

HSP 1 Score: 100 bits (250), Expect = 1.180e-24
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELACLDDELDALEGLEEDTGPSYA--AEPATLP 267
            MK ASKTLK E KK+DI+++ED+ DD+ADMMEDMNE+ D +GRSY +G+++DE DLDAELACLDDEL   E   ED+ P+Y   A+P  LP
Sbjct:  108 MKAASKTLKTEFKKVDIDQIEDVQDDLADMMEDMNEVQDALGRSYGIGDDVDEADLDAELACLDDELGMDELGLEDSTPAYLQPADPGALP 198
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: A0A7S2AMY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMY1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.150e-23
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELACLDDELDALEGLEEDTGPSYAAEPATLPV 270
            MK A+ TLKAE KK++I+ +ED  DD+ DMMEDMNEIN++MGRSY V +E+DE+DLDAELACLDDEL+ +E  EE    SY   PA LPV
Sbjct:  108 MKVAASTLKAETKKLNIDSIEDTQDDLGDMMEDMNEINEMMGRSYGVPDEMDEEDLDAELACLDDELEGIEAGEEAEA-SYLG-PAGLPV 195
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: A0A812Y1R2_SYMMI (CHMP5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y1R2_SYMMI)

HSP 1 Score: 86.3 bits (212), Expect = 8.710e-19
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELACLDDELDALEGLEEDTG---PSYAAEPATLP 267
            MKDA+K LK E  KID+N++EDL DD+ADM EDMNEI++ +GRSY   + +DEDDL+AELACL DE D  E L E+     PSY + P+ +P
Sbjct:  108 MKDAAKQLKVEHAKIDLNEIEDLNDDLADMFEDMNEISETLGRSYGTPDYIDEDDLEAELACLGDEFD--EELTEEVSLEQPSYLS-PSGMP 196
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: A0A7S2FVB6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVB6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.030e-16
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELACLDDELDALEGLEEDTGPSYAAEPATLPV 270
            MKDA+KTLKAE KK++I+++ED              IND+MGR+Y + +E+DE DLDAELACL+DEL+ LE  E +  PSY  +PA +PV
Sbjct:  134 MKDAAKTLKAETKKLNIDQIEDTQXXXXXXXXXXXXINDMMGRAYGMPDEVDEADLDAELACLEDELEGLEEGETEAAPSYL-QPAGMPV 222
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: A0A7S3K2P3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2P3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.190e-16
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELACLDDELDA-LEGLEEDTGPSYA--AEPATLP 267
            MK ASKTLK E KK++I+K++DL D         NE+ D++GRSY+VGE++DE DLDAEL  L D+LDA LE  + D+ P+Y   AEP  LP
Sbjct:  117 MKAASKTLKTEFKKVNIDKIDDLQDXXXXXXXXXNEVQDVLGRSYDVGEDIDEADLDAELEALGDDLDAELELDDADSTPAYLQPAEPTNLP 208
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: A0A024USQ4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USQ4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.660e-15
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELACLDDELDALEGLEEDTGPSYAA 249
            MK A+  LKAE KK +  ++E++ DDMADMMEDMNEI +I+GRSY +G+++DE  L+AEL  L+DE      LEE   P +AA
Sbjct:  108 MKAAATQLKAETKKFNFTELENVQDDMADMMEDMNEIQEILGRSYGIGQDIDESQLEAELEGLEDEW----ALEEAAAPQHAA 186
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: A0A835ZMU4_9STRA (Snf7 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMU4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.250e-15
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELAC 186
            MK A+K +K+E KK++I+++ED  DD+A     MNEINDIMGRSYNVG+E+DE DLDAELAC
Sbjct:  108 MKGANKQIKSEFKKMNISEIEDTIDDLAXXXXXMNEINDIMGRSYNVGDEIDEADLDAELAC 169
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: W4HCB2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCB2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.040e-14
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELACLDDELDALEGLEEDTGPSYAA 249
            MK A+  LKAE KK +  ++E++ DDMADMM+DMNEI +I+GRSY VG+++DE +L+AEL  L+DE      +EE   P +AA
Sbjct:  108 MKSAATQLKAETKKFNFAELENVQDDMADMMDDMNEIQEILGRSYGVGQDIDESELEAELEGLEDEW----AMEEAVAPQHAA 186
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BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Match: A0A1D1XUM3_9ARAE (Charged multivesicular body protein 5 n=7 Tax=Eukaryota TaxID=2759 RepID=A0A1D1XUM3_9ARAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.960e-14
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEELDEDDLDAELACLDDELDALEGLEEDTGPSYAAEPATLP 267
            M+ A+K ++ + KKIDINK+E + DDM D++E  N+I + +GR+Y V E++DEDDL+AEL  L DEL+     EE+  PSY  E   LP
Sbjct:  108 MQIANKEMQKQYKKIDINKIESIQDDMEDLLEQANDIQESLGRTYGVPEDIDEDDLEAELDALGDELN----FEEEEEPSYLQETPELP 192
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10349.738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ1_ECTSI6.460e-4085.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0Y671_AURAN1.180e-2461.54Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2AMY1_9STRA2.150e-2363.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812Y1R2_SYMMI8.710e-1956.52CHMP5 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S2FVB6_9STRA6.030e-1652.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3K2P3_9STRA8.190e-1653.26Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A024USQ4_9STRA5.660e-1553.01Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A835ZMU4_9STRA7.250e-1564.52Snf7 family n=1 Tax=Tribonema minus TaxID=303371 R... [more]
W4HCB2_9STRA1.040e-1451.81Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A1D1XUM3_9ARAE1.960e-1448.31Charged multivesicular body protein 5 n=7 Tax=Euka... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10349contigM-pyrifera_M_contig10349:3076..4681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.5e-32
Seed eggNOG ortholog2880.D8LTZ1
Preferred nameCHMP5
KEGG rclassRC00918,RC01781
KEGG koko:K01698,ko:K12198
KEGG ReactionR00036
KEGG Pathwayko00860,ko01100,ko01110,ko01120,ko04144,ko04217,map00860,map01100,map01110,map01120,map04144,map04217
KEGG ModuleM00121,M00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000815,GO:0000819,GO:0000920,GO:0001919,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007346,GO:0008104,GO:0008150,GO:0008333,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0019058,GO:0019068,GO:0019222,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0030447,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0032509,GO:0032510,GO:0032511,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0040007,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046605,GO:0046755,GO:0046907,GO:0048284,GO:0048285,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0061024,GO:0061025,GO:0061763,GO:0065007,GO:0070507,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0080171,GO:0090169,GO:0090174,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0098852,GO:0140014,GO:1901673,GO:1902115,GO:1903047,GO:1904896,GO:1904903
EggNOG free text desc.vacuolar transport
EggNOG OGsKOG1655@1,KOG1655@2759
EC4.2.1.24
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Exons3
Model size272
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10349.738.1prot_M-pyrifera_M_contig10349.738.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10349 3076..4681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.292028-CDS-M-pyrifera_M_contig10349:3075..31411622815540.292028-CDS-M-pyrifera_M_contig10349:3075..3141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10349 3076..3141 -
1692277455.3696115-CDS-M-pyrifera_M_contig10349:3075..31411692277455.3696115-CDS-M-pyrifera_M_contig10349:3075..3141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10349 3076..3141 -
1622815540.308818-CDS-M-pyrifera_M_contig10349:3835..39021622815540.308818-CDS-M-pyrifera_M_contig10349:3835..3902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10349 3836..3902 -
1692277455.380314-CDS-M-pyrifera_M_contig10349:3835..39021692277455.380314-CDS-M-pyrifera_M_contig10349:3835..3902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10349 3836..3902 -
1622815540.3230596-CDS-M-pyrifera_M_contig10349:4544..46811622815540.3230596-CDS-M-pyrifera_M_contig10349:4544..4681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10349 4545..4681 -
1692277455.3895772-CDS-M-pyrifera_M_contig10349:4544..46811692277455.3895772-CDS-M-pyrifera_M_contig10349:4544..4681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10349 4545..4681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10349.738.1

>prot_M-pyrifera_M_contig10349.738.1 ID=prot_M-pyrifera_M_contig10349.738.1|Name=mRNA_M-pyrifera_M_contig10349.738.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MKDASKTLKAEVKKIDINKVEDLTDDMADMMEDMNEINDIMGRSYNVGEE
LDEDDLDAELACLDDELDALEGLEEDTGPSYAAEPATLPV
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mRNA from alignment at M-pyrifera_M_contig10349:3076..4681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10349.738.1 ID=mRNA_M-pyrifera_M_contig10349.738.1|Name=mRNA_M-pyrifera_M_contig10349.738.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1606bp|location=Sequence derived from alignment at M-pyrifera_M_contig10349:3076..4681- (Macrocystis pyrifera P11B4 male)
ATGAAGGACGCGAGCAAGACGCTCAAGGCCGAGGTGAAGAAAATCGACAT
AAATAAGGTGGAGGACCTCACGGACGACATGGCGGACATGATGGAGGATA
TGAACGAGATCAACGACATCATGGGTCGCTCGTACAAGTGAGCGTGCGAC
CGCAAGCGGTGGTTTTCCTCCGGGACGCCACAATGCTAACCTAGTTTCTG
TGCGCTCGGGCTGCCAAAAGTCAGCGCGAGCCCAGCCCGTACGAGATTAA
TTTGCTGTTGTCCTTGTTGTTTTCATTGTTACCTGCGTTTAGGCGTGCAT
TGCCCGCTCGACTGTGATCTTGCGTTCGTACGTTCTTGTTCGGTGGCCGT
TTGAAGAGCGATGCCGTTCCGGTTCGGGCGTGGCGTGGGTCAAATACCCA
CCGCACGGGCTTGGCCTTCGTATTTCTTTGCCACTTCCTGTTGCGTGCTA
TTATCTCGTTGTCGGCGTGATATTGCTTCTAGGTGCCTCTCGCTTGATAC
AGCATCGCTGATCTTTACACGGAGGGCAGGACCTTTCACGAGAGATCGGC
GTGTTTAGTAGAACCGCTGCGGTGGGTGTGAGAATGTGTTTACTGCAGCT
TTGATTTGTTGAGGCGGGGATTTCATCAAAGAGTAGAGGACGCGAGTCTC
TCACATCCTCCGTGGTACTGTTTTTTCGTGATGTCTATCCACGGCGCGAG
ATATATTGCTCCAAACGCGGCGATTCCCCTCTCCCCCGCCTGTCCCCATT
CGCCCGATGTGCCCCTCGTGGCTGCGCAGCGTCGGAGAGGAGCTTGACGA
GGATGACCTCGACGCGGAGTTGGCGTGTCTGGACGACGAACTCGATGTGA
GTGCCGCCAAAGCACACGATTCGCGACACCGTTTTTTCGCGCATGGCTCT
CTCTCCCTCCGTACACTGTAGTTCGTCTCGCCACTGTTGGCCGTTGTCTC
TGTCTCCGCGCCAATAAAAATGAATGTGTGGCATCACTGCTGGCCTGTCG
ACGTACTCGAAATAATGATTCAGAAACCGAGAAGGGTAGACAGAAAGAGG
GACACCGCCCCGCCCGCTCTCGGTGTCCCTCGCCTCTCCTCTGGCGTAAG
GGGTGTGTGTCGAGTACCGAGCCCCGCTTTTGTTGATTATTATGAAACCA
TGAACCCTGACCTGTTTGGATATTTTCAAGACTCTGCTCGGCTCGCATAG
AAAACCGCAACGCAAATACCTGCGCACATATTCCTGCAGTGGCAGTAGGC
ACCAATTCGGCGCATTTTGCTGACCATTGCCGAGCGGACGTCGAATCTCG
GCGTCGAGGCTCCGCTCATTGGAGGAATGGGCGAGTTGCGTCGAGCTGTC
GCCTCTTGTGCGCGCAACCTCAACCTCATACGTTTTTTTCTTCGCCCAGA
CGTCTCCCCTCCTGAACCCCCCTACCCCCCCCCCGCCCCCCATCGCCCCT
GTTTCCTCGCTGTCAACCCCAATTTCGAACACCAACGCCGACACCGACGC
CAACGCCGACGCCAACGCCAACGCCAACCTTTACACACAGGCACTGGAGG
GTCTTGAGGAGGACACGGGCCCGTCGTACGCGGCGGAACCCGCGACCCTC
CCGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10349:3076..4681-

>mRNA_M-pyrifera_M_contig10349.738.1 ID=mRNA_M-pyrifera_M_contig10349.738.1|Name=mRNA_M-pyrifera_M_contig10349.738.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig10349:3076..4681- (Macrocystis pyrifera P11B4 male)
ATGAAGGACGCGAGCAAGACGCTCAAGGCCGAGGTGAAGAAAATCGACAT
AAATAAGGTGGAGGACCTCACGGACGACATGGCGGACATGATGGAGGATA
TGAACGAGATCAACGACATCATGGGTCGCTCGTACAAATGAAGGACGCGA
GCAAGACGCTCAAGGCCGAGGTGAAGAAAATCGACATAAATAAGGTGGAG
GACCTCACGGACGACATGGCGGACATGATGGAGGATATGAACGAGATCAA
CGACATCATGGGTCGCTCGTACAACGTCGGAGAGGAGCTTGACGAGGATG
ACCTCGACGCGGAGTTGGCGTGTCTGGACGACGAACTCGATCGTCGGAGA
GGAGCTTGACGAGGATGACCTCGACGCGGAGTTGGCGTGTCTGGACGACG
AACTCGATGCACTGGAGGGTCTTGAGGAGGACACGGGCCCGTCGTACGCG
GCGGAACCCGCGACCCTCCCGGTGGCACTGGAGGGTCTTGAGGAGGACAC
GGGCCCGTCGTACGCGGCGGAACCCGCGACCCTCCCGGTG
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