mRNA_M-pyrifera_M_contig10349.737.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10349.737.1
Unique NamemRNA_M-pyrifera_M_contig10349.737.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10349.737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10349contigM-pyrifera_M_contig10349:1870..2331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.1585155-UTR-M-pyrifera_M_contig10349:1869..19981622815540.1585155-UTR-M-pyrifera_M_contig10349:1869..1998Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10349 1870..1998 +
1692277455.3474658-UTR-M-pyrifera_M_contig10349:1869..19981692277455.3474658-UTR-M-pyrifera_M_contig10349:1869..1998Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10349 1870..1998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.1751409-CDS-M-pyrifera_M_contig10349:1998..23311622815540.1751409-CDS-M-pyrifera_M_contig10349:1998..2331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10349 1999..2331 +
1692277455.3608906-CDS-M-pyrifera_M_contig10349:1998..23311692277455.3608906-CDS-M-pyrifera_M_contig10349:1998..2331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10349 1999..2331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10349.737.1prot_M-pyrifera_M_contig10349.737.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10349 1999..2331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10349.737.1

>prot_M-pyrifera_M_contig10349.737.1 ID=prot_M-pyrifera_M_contig10349.737.1|Name=mRNA_M-pyrifera_M_contig10349.737.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MIAHRSKHEQTPPTLVDDTGSILHQSDSLKKLTCQKKKCRHEISEPSYSY
ARKVPVRPPPSHMVSINQSIQTLNVKSRFQHGSQFHLRGGKRHHKTAGRW
RAQVGTPGSLI
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mRNA from alignment at M-pyrifera_M_contig10349:1870..2331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10349.737.1 ID=mRNA_M-pyrifera_M_contig10349.737.1|Name=mRNA_M-pyrifera_M_contig10349.737.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig10349:1870..2331+ (Macrocystis pyrifera P11B4 male)
CGTGGATGATATTATGACGTCGCCCCCTCTGGTTTGAAGGAGAACTTCAG
AATTCTCCCACTGGAGGGAGATGGATCGACAATCCGAAGAAATCAAGAAA
CTGTTCGAAGTACCATTTTTTACCACCGCATGATAGCACACCGTAGTAAA
CATGAACAAACACCACCGACCCTGGTTGACGACACCGGTTCGATTCTCCA
CCAATCAGACTCTTTAAAAAAGTTGACGTGTCAGAAAAAAAAATGTCGGC
ATGAAATATCTGAACCAAGCTATAGCTATGCAAGGAAAGTGCCGGTGCGA
CCGCCCCCGAGCCACATGGTATCAATCAATCAATCAATACAAACGTTGAA
CGTAAAGTCACGTTTTCAACATGGATCACAATTTCATTTACGGGGCGGCA
AACGGCATCACAAAACAGCAGGGAGATGGCGTGCCCAAGTAGGCACCCCC
GGCTCCCTCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10349:1870..2331+

>mRNA_M-pyrifera_M_contig10349.737.1 ID=mRNA_M-pyrifera_M_contig10349.737.1|Name=mRNA_M-pyrifera_M_contig10349.737.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig10349:1870..2331+ (Macrocystis pyrifera P11B4 male)
ATGATAGCACACCGTAGTAAACATGAACAAACACCACCGACCCTGGTTGA
CGACACCGGTTCGATTCTCCACCAATCAGACTCTTTAAAAAAGTTGACGT
GTCAGAAAAAAAAATGTCGGCATGAAATATCTGAACCAAGCTATAGCTAT
GCAAGGAAAGTGCCGGTGCGACCGCCCCCGAGCCACATGGTATCAATCAA
TCAATCAATACAAACGTTGAACGTAAAGTCACGTTTTCAACATGGATCAC
AATTTCATTTACGGGGCGGCAAACGGCATCACAAAACAGCAGGGAGATGG
CGTGCCCAAGTAGGCACCCCCGGCTCCCTCATCATGATAGCACACCGTAG
TAAACATGAACAAACACCACCGACCCTGGTTGACGACACCGGTTCGATTC
TCCACCAATCAGACTCTTTAAAAAAGTTGACGTGTCAGAAAAAAAAATGT
CGGCATGAAATATCTGAACCAAGCTATAGCTATGCAAGGAAAGTGCCGGT
GCGACCGCCCCCGAGCCACATGGTATCAATCAATCAATCAATACAAACGT
TGAACGTAAAGTCACGTTTTCAACATGGATCACAATTTCATTTACGGGGC
GGCAAACGGCATCACAAAACAGCAGGGAGATGGCGTGCCCAAGTAGGCAC
CCCCGGCTCCCTCATC
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