mRNA_M-pyrifera_M_contig103437.736.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103437.736.1
Unique NamemRNA_M-pyrifera_M_contig103437.736.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103437.736.1 vs. uniprot
Match: UPI001D08D851 (trafficking protein particle complex subunit 3 n=2 Tax=Coccinellini TaxID=263631 RepID=UPI001D08D851)

HSP 1 Score: 49.7 bits (117), Expect = 5.180e-5
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 1 
Query:   13 ELLQLTFGAIAARIVREAEGVDSANAQLRALGASMGGRLADDFFASRAAAAALPRCSTFRDAMQSLASYALPQYLGVAGAVGRW 264
            EL+ LT+GA+ A++V++AE  D    QL  LG +MG RL +DF A         RC   +D    + S A   YLG+   V  W
Sbjct:   16 ELVTLTYGALVAQMVKDAENTDDVGKQLERLGYNMGVRLIEDFLAKTGTG----RCIDLKDTADKIQS-AFKMYLGLQPNVANW 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103437.736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001D08D8515.180e-538.10trafficking protein particle complex subunit 3 n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103437contigM-pyrifera_M_contig103437:1..360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.1144865-CDS-M-pyrifera_M_contig103437:0..1501622815540.1144865-CDS-M-pyrifera_M_contig103437:0..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103437 1..150 -
1692277455.3183384-CDS-M-pyrifera_M_contig103437:0..1501692277455.3183384-CDS-M-pyrifera_M_contig103437:0..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103437 1..150 -
1622815540.1248503-CDS-M-pyrifera_M_contig103437:198..3601622815540.1248503-CDS-M-pyrifera_M_contig103437:198..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103437 199..360 -
1692277455.3305929-CDS-M-pyrifera_M_contig103437:198..3601692277455.3305929-CDS-M-pyrifera_M_contig103437:198..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103437 199..360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103437.736.1prot_M-pyrifera_M_contig103437.736.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103437 1..360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103437.736.1

>prot_M-pyrifera_M_contig103437.736.1 ID=prot_M-pyrifera_M_contig103437.736.1|Name=mRNA_M-pyrifera_M_contig103437.736.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
LQSLELLQLTFGAIAARIVREAEGVDSANAQLRALGASMGGRLADDFFAS
RAAAAALPRCSTFRDAMQSLASYALPQYLGVAGAVGRWGEGDGSVELELE
RDVL
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mRNA from alignment at M-pyrifera_M_contig103437:1..360-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103437.736.1 ID=mRNA_M-pyrifera_M_contig103437.736.1|Name=mRNA_M-pyrifera_M_contig103437.736.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig103437:1..360- (Macrocystis pyrifera P11B4 male)
TTGCAGTCACTGGAGCTGTTGCAGCTGACATTCGGGGCCATTGCTGCGCG
GATTGTGCGGGAAGCGGAGGGAGTGGATTCTGCAAACGCGCAACTGCGTG
CGCTGGGCGCGAGCATGGGTGGACGGTTGGCAGACGACTTCTTCGCGTCT
CGAGCAGCTGCAGTGCTGTCTCGTGCAGCCGCGGAGGCGCCCGGTAGTGC
TCGAGTGGAGGCAGCTTTGCCTCGATGCTCGACTTTCCGCGATGCGATGC
AGTCTCTTGCGTCATACGCTCTGCCACAATACTTGGGAGTCGCAGGTGCG
GTGGGCCGATGGGGTGAAGGGGACGGGAGCGTGGAGCTTGAGCTGGAGCG
AGACGTGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103437:1..360-

>mRNA_M-pyrifera_M_contig103437.736.1 ID=mRNA_M-pyrifera_M_contig103437.736.1|Name=mRNA_M-pyrifera_M_contig103437.736.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig103437:1..360- (Macrocystis pyrifera P11B4 male)
TTGCAGTCACTGGAGCTGTTGCAGCTGACATTCGGGGCCATTGCTGCGCG
GATTGTGCGGGAAGCGGAGGGAGTGGATTCTGCAAACGCGCAACTGCGTG
CGCTGGGCGCGAGCATGGGTGGACGGTTGGCAGACGACTTCTTCGCGTCT
CGAGCAGCTGCATTGCAGTCACTGGAGCTGTTGCAGCTGACATTCGGGGC
CATTGCTGCGCGGATTGTGCGGGAAGCGGAGGGAGTGGATTCTGCAAACG
CGCAACTGCGTGCGCTGGGCGCGAGCATGGGTGGACGGTTGGCAGACGAC
TTCTTCGCGTCTCGAGCAGCTGCAGCAGCTTTGCCTCGATGCTCGACTTT
CCGCGATGCGATGCAGTCTCTTGCGTCATACGCTCTGCCACAATACTTGG
GAGTCGCAGGTGCGGTGGGCCGATGGGGTGAAGGGGACGGGAGCGTGGAG
CTTGAGCTGGAGCGAGACGTGCTGGCAGCTTTGCCTCGATGCTCGACTTT
CCGCGATGCGATGCAGTCTCTTGCGTCATACGCTCTGCCACAATACTTGG
GAGTCGCAGGTGCGGTGGGCCGATGGGGTGAAGGGGACGGGAGCGTGGAG
CTTGAGCTGGAGCGAGACGTGCTG
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