mRNA_M-pyrifera_M_contig103436.735.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103436.735.1
Unique NamemRNA_M-pyrifera_M_contig103436.735.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A482RJM3_9ARCH (Cullin_Nedd8 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RJM3_9ARCH)

HSP 1 Score: 98.6 bits (244), Expect = 3.390e-24
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            + MASL+E      RVEDDR  AI+AC VRIMKARKTL + +L+  VL+ L  FRPNPK +K RIE+LI+ DY+ERD  DPS++ Y+A
Sbjct:   82 VPMASLDEIDVTK-RVEDDRSYAIEACAVRIMKARKTLSHNELVTAVLEDLHVFRPNPKVIKKRIENLIERDYLERDTADPSIYKYLA 168
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A7S1TYF3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYF3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 7.180e-21
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            I MASLE+S   A RVE+DR  AI+A +VRIMKARK+L +Q L+  VL QL  FRPNP+TVK RIE+LI+ +Y+ERD     V+ Y+A
Sbjct:  656 IPMASLEDSHNQAKRVEEDRTFAIEAAIVRIMKARKSLAHQALVAEVLSQLVLFRPNPRTVKRRIEALIEREYLERDPDQSGVYRYLA 743
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.830e-20
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            I MA+L+ES  +  RVE+DR  AI+A VVRIMKARKTL +Q L+  VL QLS FRPNPK +K RIE+LID +Y+ERD   P+ + Y+A
Sbjct:  675 IPMANLDES-HNPKRVEEDRTVAIEAAVVRIMKARKTLDHQQLLAEVLSQLSFFRPNPKVIKRRIEALIDREYLERDPDLPNAYRYLA 761
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.650e-20
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            I MASLEES  +  RVE+DR  AI+A +VRIMKARK L +Q L+  VL QLS FRPNPK +K RIE+LI+ +Y+ERD   P+ + Y+A
Sbjct:  661 IPMASLEES-HNPKRVEEDRTIAIEAAIVRIMKARKALGHQQLVAEVLSQLSFFRPNPKVIKRRIEALIEREYLERDPDTPNTYRYLA 747
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A7R9Z9G2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9G2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.720e-20
Identity = 47/88 (53.41%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            I MASL+ S  +  RVE+DR  AI+A +VRIMKARKTL++Q L+  VL QL+ F+PNP+ +K RIE+LID +Y+ER   + +V++Y+A
Sbjct:  120 IPMASLDAS-HNTKRVEEDRSIAIEAAIVRIMKARKTLQHQQLIAEVLSQLAFFKPNPRVIKKRIEALIDREYLERSADNSNVYNYLA 206
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A7S2V5E8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5E8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.060e-20
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            I MA+L+ES K   RVE+DR  AI+A +VRIMKARKTL +Q L+  VL QL+ FRPNPK +K RIE+LID +Y+ERD +  + + Y+A
Sbjct:  207 IPMANLDESYKPK-RVEEDRSIAIEAAIVRIMKARKTLPHQQLVAEVLSQLAFFRPNPKVIKRRIEALIDREYLERDLETANSYRYLA 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A7S2BNG9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNG9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.260e-19
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            I MA+L+ES  +  RVE+DR  AI+A VVRIMKARK L +Q L+  VL QL+ F+PNPK +K RIE+LID +Y+ERD   P+ + Y+A
Sbjct:  272 IPMANLDES-HNPKRVEEDRSVAIEAAVVRIMKARKQLSHQQLLAEVLSQLAFFKPNPKVIKRRIEALIDREYLERDPDVPNTYKYLA 358
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A7S3HJE5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJE5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.510e-19
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            I M+ LEES  +  RVE+DR  AI+A +VRIMKAR TL +Q L+  VL QLS FRP+PK +K RIE+LID +Y+ERD+++ + + Y+A
Sbjct:  162 IPMSLLEES-HNPKRVEEDRSIAIEAAIVRIMKARLTLSHQQLVAEVLSQLSFFRPDPKVIKRRIEALIDREYLERDQENQNTYKYMA 248
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A7S4E958_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E958_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.300e-19
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            + MASL+ES  +  RVE+DR  AI+A VVRIMKARK L +Q L+  VL QL+ FRPNPK +K RIE+LID +Y+ERD +  + + Y+A
Sbjct:  305 VPMASLDES-HNPKRVEEDRTVAIEAAVVRIMKARKALSHQSLLAEVLSQLAFFRPNPKVIKRRIEALIDREYLERDPEVANAYRYLA 391
[Close]
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Match: A0A7S4DET0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DET0_HETAK)

HSP 1 Score: 87.8 bits (216), Expect = 2.440e-19
Identity = 45/88 (51.14%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 IQMASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLSTFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA 264
            + MA+L++S  +  RVE+DR  AI+A VVRIMKARK L +Q L+  VL QL+ FRP+P+ +K R+E+LID +Y+ERD + P+ + Y+A
Sbjct:  151 VPMAALDQS-HNPKRVEEDRSVAIEAAVVRIMKARKALSHQQLLAEVLSQLAFFRPSPRVIKRRVEALIDREYLERDPEAPNAYRYLA 237
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103436.735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482RJM3_9ARCH3.390e-2457.95Cullin_Nedd8 domain-containing protein n=1 Tax=arc... [more]
A0A7S1TYF3_9STRA7.180e-2157.95Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3JSF7_9STRA1.830e-2059.09Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835YLK2_9STRA4.650e-2057.95Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7R9Z9G2_9STRA4.720e-2053.41Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2V5E8_9STRA8.060e-2056.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BNG9_9STRA1.260e-1955.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3HJE5_9STRA1.510e-1954.55Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4E958_9STRA2.300e-1955.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4DET0_HETAK2.440e-1951.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103436contigM-pyrifera_M_contig103436:3..269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog157072.XP_008867819.1
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Exons1
Model size267
Cds size261
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.0604336-UTR-M-pyrifera_M_contig103436:2..81622815540.0604336-UTR-M-pyrifera_M_contig103436:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103436 3..8 +
1692277455.2897902-UTR-M-pyrifera_M_contig103436:2..81692277455.2897902-UTR-M-pyrifera_M_contig103436:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103436 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.0729845-CDS-M-pyrifera_M_contig103436:8..2691622815540.0729845-CDS-M-pyrifera_M_contig103436:8..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103436 9..269 +
1692277455.2997475-CDS-M-pyrifera_M_contig103436:8..2691692277455.2997475-CDS-M-pyrifera_M_contig103436:8..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103436 9..269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103436.735.1prot_M-pyrifera_M_contig103436.735.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103436 9..269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103436.735.1

>prot_M-pyrifera_M_contig103436.735.1 ID=prot_M-pyrifera_M_contig103436.735.1|Name=mRNA_M-pyrifera_M_contig103436.735.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MASLEESGKDAGRVEDDRRQAIDACVVRIMKARKTLRYQDLMGLVLKQLS
TFRPNPKTVKVRIESLIDADYIERDEKDPSVFSYVA*
back to top

mRNA from alignment at M-pyrifera_M_contig103436:3..269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103436.735.1 ID=mRNA_M-pyrifera_M_contig103436.735.1|Name=mRNA_M-pyrifera_M_contig103436.735.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig103436:3..269+ (Macrocystis pyrifera P11B4 male)
ATCCAAATGGCATCCCTCGAAGAGTCAGGAAAAGACGCAGGCAGGGTCGA
AGACGACCGCAGACAAGCCATCGACGCCTGCGTGGTGCGCATCATGAAGG
CCAGAAAGACCCTCCGCTACCAGGACCTCATGGGCCTCGTCCTCAAGCAG
CTCTCCACCTTCCGGCCCAACCCAAAGACCGTCAAGGTCAGAATCGAGTC
ACTCATCGACGCAGACTACATCGAAAGGGACGAAAAGGACCCGTCCGTAT
TCAGCTACGTCGCATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103436:3..269+

>mRNA_M-pyrifera_M_contig103436.735.1 ID=mRNA_M-pyrifera_M_contig103436.735.1|Name=mRNA_M-pyrifera_M_contig103436.735.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig103436:3..269+ (Macrocystis pyrifera P11B4 male)
ATGGCATCCCTCGAAGAGTCAGGAAAAGACGCAGGCAGGGTCGAAGACGA
CCGCAGACAAGCCATCGACGCCTGCGTGGTGCGCATCATGAAGGCCAGAA
AGACCCTCCGCTACCAGGACCTCATGGGCCTCGTCCTCAAGCAGCTCTCC
ACCTTCCGGCCCAACCCAAAGACCGTCAAGGTCAGAATCGAGTCACTCAT
CGACGCAGACTACATCGAAAGGGACGAAAAGGACCCGTCCGTATTCAGCT
ACGTCGCATGAATGGCATCCCTCGAAGAGTCAGGAAAAGACGCAGGCAGG
GTCGAAGACGACCGCAGACAAGCCATCGACGCCTGCGTGGTGCGCATCAT
GAAGGCCAGAAAGACCCTCCGCTACCAGGACCTCATGGGCCTCGTCCTCA
AGCAGCTCTCCACCTTCCGGCCCAACCCAAAGACCGTCAAGGTCAGAATC
GAGTCACTCATCGACGCAGACTACATCGAAAGGGACGAAAAGGACCCGTC
CGTATTCAGCTACGTCGCATGA
back to top