mRNA_M-pyrifera_M_contig103435.734.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103435.734.1
Unique NamemRNA_M-pyrifera_M_contig103435.734.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: A0A5A8CN95_CAFRO (Histone acetyltransferase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CN95_CAFRO)

HSP 1 Score: 286 bits (733), Expect = 6.350e-93
Identity = 130/172 (75.58%), Postives = 151/172 (87.79%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPVDVLYIHEFSLRFFRHRRELLRHARKYPHRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            GRH M+TWYFSP P+E+W D  +D LY HE SLRFF+H+ E+LRHA K+P +HPPGDE+YR  G+AV+ELDG+KEKE+CQNLSYLAK FLDHKTL +DVDPFLFYV TEYDEFGYH VGY+SKEKY D+GYNLACIL LPC QR+G+GRFIIQFSYELS+KE +VGSPEKPL
Sbjct:  179 GRHRMETWYFSPLPKELWQDEIIDTLYFHEHSLRFFKHKAEMLRHAAKWPLKHPPGDEVYRHQGMAVFELDGAKEKEYCQNLSYLAKFFLDHKTLQWDVDPFLFYVFTEYDEFGYHFVGYYSKEKYCDAGYNLACILALPCFQRRGFGRFIIQFSYELSRKERRVGSPEKPL 350
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: A0A7S2B6L5_9STRA (Histone acetyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6L5_9STRA)

HSP 1 Score: 270 bits (690), Expect = 5.500e-86
Identity = 126/173 (72.83%), Postives = 150/173 (86.71%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPVDVLYIHEFSLRFFRHRRELLR-HARKYPHRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            GRH+M+TWYFSP+P+E +  G VD LY  E+SLRFF H+ EL R HA +   RHPPG+EIYR +G+A++E+DG++ KE+CQNL YLAKLFLDHKTL+YDVDPFLFYV+ EYD+ G+HPVGYFSKEKYSD GYNLACILTLPC+QR+GYGRF+I FSYELSKKE KVGSPEKPL
Sbjct:  212 GRHIMETWYFSPFPKEYYPSGYVDRLYFCEYSLRFFSHKDELTRYHAVRQVDRHPPGNEIYRHEGLAMFEVDGTESKEYCQNLCYLAKLFLDHKTLYYDVDPFLFYVMCEYDDRGFHPVGYFSKEKYSDVGYNLACILTLPCYQRRGYGRFLISFSYELSKKEIKVGSPEKPL 384
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: A0A7S1UBS9_9STRA (Histone acetyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBS9_9STRA)

HSP 1 Score: 262 bits (670), Expect = 4.700e-85
Identity = 128/176 (72.73%), Postives = 147/176 (83.52%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPVDV--LYIHEFSLRFFRHRRELLRHAR--KYPHRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            G   MDTWYFSP+P+E++ DG + +  LY  E+SL+FF+HR ELLR  R  KYP RHPPG EIYR   V+V+E+DG  + E+CQNLSY AKLFLDHKTL+YDVDPFLFYVITE+D+ GYHPVGYFSKEK+SD GYNLACILT PCHQRKGYGRFII FSYELSK+E KVGSPEKPL
Sbjct:   48 GDFCMDTWYFSPFPKELFPDGCMTIPCLYFCEYSLKFFKHREELLRFQRRHKYP-RHPPGQEIYRDGPVSVFEVDGLTDTEYCQNLSYFAKLFLDHKTLYYDVDPFLFYVITEFDDRGYHPVGYFSKEKHSDLGYNLACILTFPCHQRKGYGRFIIAFSYELSKRERKVGSPEKPL 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: A0A813BEX4_9DINO (Histone acetyltransferase (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BEX4_9DINO)

HSP 1 Score: 258 bits (659), Expect = 2.110e-83
Identity = 116/172 (67.44%), Postives = 145/172 (84.30%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPVDVLYIHEFSLRFFRHRRELLRHARKYPHRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            GRHV++ WYF+PYP+E W  G  D LY+ EF+L+FF  + EL+   RK    HPPGDE+YR DG+A++E+DG+ +KE+CQNLSY+AK+FLDHKTL+YDVDPFLFY++ E DEFGYH VGY+SKEKYS++GYNLACILTLP +QRKGYG+F+IQFSY LSK E +VGSPEKPL
Sbjct:  105 GRHVIEAWYFTPYPQEFWKGGVTDTLYLDEFTLKFFLTKEELVAFRRKCTLMHPPGDELYRHDGIAMFEVDGAVQKEYCQNLSYVAKMFLDHKTLYYDVDPFLFYIMCEVDEFGYHIVGYYSKEKYSEAGYNLACILTLPPYQRKGYGKFLIQFSYALSKIEKRVGSPEKPL 276
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: A0A7S3NP91_9STRA (Histone acetyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NP91_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.130e-80
Identity = 117/172 (68.02%), Postives = 144/172 (83.72%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPVDVLYIHEFSLRFFRHRRELLRHARKYPHRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            GRH+MDTWYFSP+P+EI+ +G   +LY+ EFS  FF HR EL R   ++    PPGDEIYR DG+A++E+DG++   +CQNL Y AKLFLDHKTL++DVDPFLFYV+TEYD++GYHPVGY+SKEKYS+ GYNLACILT P +QRKGYGRF+I FSY LS+KEGKVG+PEKPL
Sbjct:  313 GRHIMDTWYFSPFPKEIYPNGYTQILYVCEFSFSFFTHRSELERFQNRHQLFSPPGDEIYRHDGLAMFEVDGNQHTTYCQNLCYFAKLFLDHKTLYFDVDPFLFYVLTEYDQYGYHPVGYYSKEKYSEVGYNLACILTFPPYQRKGYGRFLIAFSYALSRKEGKVGAPEKPL 484
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: H3HBV1_PHYRM (Histone acetyltransferase n=7 Tax=Phytophthora TaxID=4783 RepID=H3HBV1_PHYRM)

HSP 1 Score: 251 bits (641), Expect = 7.860e-80
Identity = 119/173 (68.79%), Postives = 140/173 (80.92%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPVDVLYIHEFSLRFFRHRRELLRHA-RKYPHRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            GR  M  WYFSP+P+E + DG +D L+  EF + FF H+REL  H  R+  +RHPPG+EIYR + ++V+E+DG+  K +CQNL YLAKLFLDHKTL+YDVDPFLFY+I E D  G+HPVGYFSKEKYS+ GYNLACILT PCHQRKGYG FIIQFSYELSKKE KVGSPEKPL
Sbjct:  151 GRFRMAAWYFSPFPKEYYPDGSIDCLHFCEFCMAFFCHKRELAVHQERRVCNRHPPGNEIYRHENLSVFEVDGAISKVYCQNLCYLAKLFLDHKTLYYDVDPFLFYIICEVDSRGFHPVGYFSKEKYSELGYNLACILTFPCHQRKGYGHFIIQFSYELSKKEEKVGSPEKPL 323
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: A0A1V9Z308_9STRA (Histone acetyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z308_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.000e-79
Identity = 119/173 (68.79%), Postives = 137/173 (79.19%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPVDVLYIHEFSLRFFRHRRELLRHARKYP-HRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            G+H M  WYFSP+P+E   DG +D LY  EF   FFR++ EL  H  +    RHPPG+EIYR DG+AV+E+DG+  K +CQNL Y AKLFLDHKTL+YDVDPFLFY++ E D  G+HPVGYFSKEKYS+ GYNLACILT PCHQRKGYG FIIQFSYELSKKE KVGSPEKPL
Sbjct:  165 GKHRMAVWYFSPFPKEFIPDGSIDCLYFCEFCFTFFRYKSELRVHRERVACPRHPPGNEIYRHDGIAVFEVDGAISKPYCQNLCYFAKLFLDHKTLYYDVDPFLFYILCEIDARGFHPVGYFSKEKYSELGYNLACILTFPCHQRKGYGNFIIQFSYELSKKEEKVGSPEKPL 337
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: A0A425C586_9STRA (Histone acetyltransferase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C586_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.050e-79
Identity = 119/173 (68.79%), Postives = 141/173 (81.50%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPVDVLYIHEFSLRFFRHRRELLRHA-RKYPHRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            GR+ M  WYFSP+P+E + DG +D LY  EF + FF ++REL  H  R+  +RHPPG+EIYR + ++V+E+DG+  K +CQNL YLAKLFLDHKTL+YDVDPFLFY+I E D  G+HPVGYFSKEKYS+ GYNLACILT PCHQRKGYG FIIQFSYELSKKE KVGSPEKPL
Sbjct:  154 GRYRMAAWYFSPFPKEYYPDGSIDCLYFCEFCMAFFCYKRELTVHQERRICNRHPPGNEIYRHENLSVFEVDGAISKVYCQNLCYLAKLFLDHKTLYYDVDPFLFYIICEVDSRGFHPVGYFSKEKYSELGYNLACILTFPCHQRKGYGHFIIQFSYELSKKEEKVGSPEKPL 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: A0A024G2L8_9STRA (Histone acetyltransferase n=2 Tax=Albugo TaxID=65356 RepID=A0A024G2L8_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.410e-79
Identity = 120/173 (69.36%), Postives = 139/173 (80.35%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPVDVLYIHEFSLRFFRHRRELLRHA-RKYPHRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            GR+ M  WYFSP+P+E +  G +D LY  EF L FF H+ EL  H  R+   RHPPG+EIYR D ++V+E+DG+  K +CQNL Y AKLFLDHKTL+YDVDPFLFY++ E D  G+HPVGYFSKEKYS+ GYNLACILTLPCHQRKGYG FIIQFSYELSKKEGKVGSPEKPL
Sbjct:  204 GRYRMAAWYFSPFPKEFFPGGHIDCLYFCEFCLAFFCHKSELQHHQIREACDRHPPGNEIYRHDNLSVFEVDGAMSKFYCQNLCYFAKLFLDHKTLYYDVDPFLFYIVCEVDTRGFHPVGYFSKEKYSELGYNLACILTLPCHQRKGYGNFIIQFSYELSKKEGKVGSPEKPL 376
[Close]
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Match: B8C892_THAPS (Histone acetyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C892_THAPS)

HSP 1 Score: 248 bits (634), Expect = 1.500e-79
Identity = 121/176 (68.75%), Postives = 146/176 (82.95%), Query Frame = 1 
Query:    1 GRHVMDTWYFSPYPREIWADGPV-DVLYIHEFSLRFFRHRRELLRH-ARKYP--HRHPPGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLFYVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQFSYELSKKEGKVGSPEKPL 516
            G + MDTWYFSP P+E++ DG V DVLY+ EFSL FF  + ELLR+ A++ P   RHPPG+EIYR   ++++E+DG +E+ +CQNL Y+AKLFLDHKTL++DVDPFLFYV+ E DE GYHPVGY+SKEKYSD GYNLACILT P HQRKGYGRF+I FSYELSKKE KVGSPEKP+
Sbjct:   73 GPYQMDTWYFSPLPKELFKDGGVVDVLYVDEFSLNFFTRKSELLRYQAKELPKNRRHPPGNEIYRCGNLSMFEVDGFEERIYCQNLCYIAKLFLDHKTLYFDVDPFLFYVLCEVDERGYHPVGYYSKEKYSDVGYNLACILTFPSHQRKGYGRFLIAFSYELSKKEEKVGSPEKPM 248
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103435.734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CN95_CAFRO6.350e-9375.58Histone acetyltransferase n=1 Tax=Cafeteria roenbe... [more]
A0A7S2B6L5_9STRA5.500e-8672.83Histone acetyltransferase n=1 Tax=Dictyocha specul... [more]
A0A7S1UBS9_9STRA4.700e-8572.73Histone acetyltransferase n=1 Tax=Phaeomonas parva... [more]
A0A813BEX4_9DINO2.110e-8367.44Histone acetyltransferase (Fragment) n=1 Tax=Symbi... [more]
A0A7S3NP91_9STRA1.130e-8068.02Histone acetyltransferase n=1 Tax=Aureoumbra lagun... [more]
H3HBV1_PHYRM7.860e-8068.79Histone acetyltransferase n=7 Tax=Phytophthora Tax... [more]
A0A1V9Z308_9STRA1.000e-7968.79Histone acetyltransferase n=1 Tax=Thraustotheca cl... [more]
A0A425C586_9STRA1.050e-7968.79Histone acetyltransferase n=1 Tax=Peronospora effu... [more]
A0A024G2L8_9STRA1.410e-7969.36Histone acetyltransferase n=2 Tax=Albugo TaxID=653... [more]
B8C892_THAPS1.500e-7968.75Histone acetyltransferase (Fragment) n=1 Tax=Thala... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103435contigM-pyrifera_M_contig103435:1..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.2
Seed ortholog evalue4.2e-65
Seed eggNOG ortholog2880.D7G7K4
KEGG koko:K11304,ko:K11308
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008080,GO:0008134,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010224,GO:0010468,GO:0010485,GO:0010506,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030099,GO:0030154,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0034708,GO:0035064,GO:0035097,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0043995,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048580,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071339,GO:0071704,GO:0071840,GO:0072487,GO:0080090,GO:0090304,GO:0140030,GO:0140034,GO:1901360,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000026,GO:2000028,GO:2000112,GO:2000113,GO:2000241,GO:2001141
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5027@1,KOG2747@2759
EC2.3.1.48
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons1
Model size516
Cds size504
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.012461-CDS-M-pyrifera_M_contig103435:0..5041622815540.012461-CDS-M-pyrifera_M_contig103435:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103435 1..504 -
1692277455.2716997-CDS-M-pyrifera_M_contig103435:0..5041692277455.2716997-CDS-M-pyrifera_M_contig103435:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103435 1..504 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.0262442-UTR-M-pyrifera_M_contig103435:504..5161622815540.0262442-UTR-M-pyrifera_M_contig103435:504..516Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103435 505..516 -
1692277455.2813156-UTR-M-pyrifera_M_contig103435:504..5161692277455.2813156-UTR-M-pyrifera_M_contig103435:504..516Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103435 505..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103435.734.1prot_M-pyrifera_M_contig103435.734.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103435 1..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103435.734.1

>prot_M-pyrifera_M_contig103435.734.1 ID=prot_M-pyrifera_M_contig103435.734.1|Name=mRNA_M-pyrifera_M_contig103435.734.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
MDTWYFSPYPREIWADGPVDVLYIHEFSLRFFRHRRELLRHARKYPHRHP
PGDEIYRKDGVAVWELDGSKEKEWCQNLSYLAKLFLDHKTLFYDVDPFLF
YVITEYDEFGYHPVGYFSKEKYSDSGYNLACILTLPCHQRKGYGRFIIQF
SYELSKKEGKVGSPEKPL
back to top

mRNA from alignment at M-pyrifera_M_contig103435:1..516-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103435.734.1 ID=mRNA_M-pyrifera_M_contig103435.734.1|Name=mRNA_M-pyrifera_M_contig103435.734.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig103435:1..516- (Macrocystis pyrifera P11B4 male)
GGTCGTCATGTGATGGACACTTGGTATTTCTCTCCGTACCCTCGGGAGAT
TTGGGCAGATGGTCCTGTAGACGTGTTGTACATCCATGAGTTTTCCCTTC
GCTTCTTCCGTCATCGTCGTGAGTTGCTTCGTCATGCTCGGAAATACCCT
CATCGACACCCCCCAGGGGACGAGATTTACCGGAAGGATGGTGTGGCGGT
GTGGGAATTGGACGGGTCGAAGGAGAAGGAGTGGTGCCAGAATTTGAGCT
ACCTAGCCAAACTTTTCTTGGATCACAAGACGCTGTTTTATGACGTCGAC
CCTTTCCTCTTCTACGTCATCACAGAGTATGATGAATTTGGATACCACCC
AGTGGGGTACTTTAGCAAGGAAAAGTACTCTGACTCTGGCTACAACCTTG
CTTGCATTCTCACTCTCCCCTGCCACCAGCGGAAGGGCTACGGACGCTTC
ATCATCCAATTCTCGTACGAATTGTCCAAGAAAGAAGGAAAAGTTGGCTC
CCCAGAAAAACCTCTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103435:1..516-

>mRNA_M-pyrifera_M_contig103435.734.1 ID=mRNA_M-pyrifera_M_contig103435.734.1|Name=mRNA_M-pyrifera_M_contig103435.734.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig103435:1..516- (Macrocystis pyrifera P11B4 male)
ATGGACACTTGGTATTTCTCTCCGTACCCTCGGGAGATTTGGGCAGATGG
TCCTGTAGACGTGTTGTACATCCATGAGTTTTCCCTTCGCTTCTTCCGTC
ATCGTCGTGAGTTGCTTCGTCATGCTCGGAAATACCCTCATCGACACCCC
CCAGGGGACGAGATTTACCGGAAGGATGGTGTGGCGGTGTGGGAATTGGA
CGGGTCGAAGGAGAAGGAGTGGTGCCAGAATTTGAGCTACCTAGCCAAAC
TTTTCTTGGATCACAAGACGCTGTTTTATGACGTCGACCCTTTCCTCTTC
TACGTCATCACAGAGTATGATGAATTTGGATACCACCCAGTGGGGTACTT
TAGCAAGGAAAAGTACTCTGACTCTGGCTACAACCTTGCTTGCATTCTCA
CTCTCCCCTGCCACCAGCGGAAGGGCTACGGACGCTTCATCATCCAATTC
TCGTACGAATTGTCCAAGAAAGAAGGAAAAGTTGGCTCCCCAGAAAAACC
TCTCATGGACACTTGGTATTTCTCTCCGTACCCTCGGGAGATTTGGGCAG
ATGGTCCTGTAGACGTGTTGTACATCCATGAGTTTTCCCTTCGCTTCTTC
CGTCATCGTCGTGAGTTGCTTCGTCATGCTCGGAAATACCCTCATCGACA
CCCCCCAGGGGACGAGATTTACCGGAAGGATGGTGTGGCGGTGTGGGAAT
TGGACGGGTCGAAGGAGAAGGAGTGGTGCCAGAATTTGAGCTACCTAGCC
AAACTTTTCTTGGATCACAAGACGCTGTTTTATGACGTCGACCCTTTCCT
CTTCTACGTCATCACAGAGTATGATGAATTTGGATACCACCCAGTGGGGT
ACTTTAGCAAGGAAAAGTACTCTGACTCTGGCTACAACCTTGCTTGCATT
CTCACTCTCCCCTGCCACCAGCGGAAGGGCTACGGACGCTTCATCATCCA
ATTCTCGTACGAATTGTCCAAGAAAGAAGGAAAAGTTGGCTCCCCAGAAA
AACCTCTC
back to top