mRNA_M-pyrifera_M_contig100312.73.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100312.73.1
Unique NamemRNA_M-pyrifera_M_contig100312.73.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100312.73.1 vs. uniprot
Match: A0A2E5VHR7_9PLAN (SGNH_hydro domain-containing protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E5VHR7_9PLAN)

HSP 1 Score: 105 bits (263), Expect = 3.910e-24
Identity = 60/138 (43.48%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:   34 FRGFAVVFGLILGLGAAELGLRLFGQELFRLGSKTYLVNEQDNVNF-HCYPDNHSGDLKPVPD-VSQGSWRLYDSSLPPNELPLADLENTPWCVEYRMSPQKLRDRVYAPTPPPGVIRVLGVGDSFAMGVGVPVERSL 441
            FR  +V+ GL  GL  AE  L + G E  RL  K  L  + +  N+ HCY  N + + +PVP+ V + SW L D+ L    +P+  LE TPWCVEY++S Q++RDR Y    P GV R+  VGDSF  G GVP    L
Sbjct:   56 FRSLSVILGLTGGLLLAEAVLWIAGVEPPRLRGKQTLTRKGETGNYYHCYASNPNQEFQPVPEEVRKESWELLDNQLRKKPVPIEWLEKTPWCVEYKVSSQQIRDREYQIPLPAGVTRIAMVGDSFVYGEGVPFHAIL 193
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BLAST of mRNA_M-pyrifera_M_contig100312.73.1 vs. uniprot
Match: A0A2V7XFM6_9BACT (SGNH_hydro domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7XFM6_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 5.610e-7
Identity = 50/143 (34.97%), Postives = 64/143 (44.76%), Query Frame = 1 
Query:   13 SSARSWLFRGFAVVFG--LILGLGAAELGLRLFGQELFRLGSKTYLVNEQDNVNFHCYPDNHSG----DLKPVPDVSQGSWRLYDSSLPPNELPLADLENTPWCVEYRMSPQKLRDRVYAPTPPPGVIRVLGVGDSFAMGVGV 423
            S AR+    G A +F   L+L   A E  LRL G E  RL +   +V+        CYP N  G    DL+      +  W      + P  L  A     PW VE+R +  + RD    P PP GV RV+ +GDSF  G GV
Sbjct:    2 SGARARAAAGSAGLFAGSLLLAFLAGEGALRLAGYEPTRLRNTARVVDSSWRALLDCYPTNPRGYFDIDLRDERTRERYRW------MAPVRLD-AVARRAPWAVEFRYNALRFRDAPLGPKPP-GVRRVMVLGDSFTEGQGV 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100312.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E5VHR7_9PLAN3.910e-2443.48SGNH_hydro domain-containing protein n=2 Tax=Planc... [more]
A0A2V7XFM6_9BACT5.610e-734.97SGNH_hydro domain-containing protein n=1 Tax=Acido... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100312contigM-pyrifera_M_contig100312:239..679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score118.2
Seed ortholog evalue3.1e-24
Seed eggNOG ortholog344747.PM8797T_18926
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.lipolytic protein G-D-S-L family
EggNOG OGsCOG2755@1,COG2755@2
COG Functional cat.E
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815499.0010524-CDS-M-pyrifera_M_contig100312:238..6791622815499.0010524-CDS-M-pyrifera_M_contig100312:238..679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100312 239..679 +
1692277439.1758645-CDS-M-pyrifera_M_contig100312:238..6791692277439.1758645-CDS-M-pyrifera_M_contig100312:238..679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100312 239..679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100312.73.1prot_M-pyrifera_M_contig100312.73.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100312 239..679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100312.73.1

>prot_M-pyrifera_M_contig100312.73.1 ID=prot_M-pyrifera_M_contig100312.73.1|Name=mRNA_M-pyrifera_M_contig100312.73.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
PSARSSARSWLFRGFAVVFGLILGLGAAELGLRLFGQELFRLGSKTYLVN
EQDNVNFHCYPDNHSGDLKPVPDVSQGSWRLYDSSLPPNELPLADLENTP
WCVEYRMSPQKLRDRVYAPTPPPGVIRVLGVGDSFAMGVGVPVERSL
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mRNA from alignment at M-pyrifera_M_contig100312:239..679+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100312.73.1 ID=mRNA_M-pyrifera_M_contig100312.73.1|Name=mRNA_M-pyrifera_M_contig100312.73.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig100312:239..679+ (Macrocystis pyrifera P11B4 male)
CCGTCTGCCAGAAGTTCTGCACGTTCTTGGTTGTTCCGAGGTTTCGCGGT
TGTCTTTGGCCTAATCCTCGGACTCGGTGCTGCCGAGCTCGGACTCCGTT
TGTTCGGGCAAGAACTGTTTCGCCTGGGGTCAAAGACCTACCTGGTCAAC
GAACAAGACAATGTCAATTTCCACTGCTATCCAGACAACCACAGTGGCGA
TCTTAAGCCGGTTCCTGATGTGAGCCAGGGTTCATGGCGGCTATACGATT
CTTCTCTACCGCCGAATGAGTTGCCACTCGCCGATCTAGAGAACACCCCG
TGGTGCGTTGAATATCGGATGTCACCACAAAAGCTTCGCGATCGGGTTTA
TGCGCCCACGCCACCGCCTGGCGTAATTCGCGTGCTGGGCGTTGGCGACT
CATTCGCCATGGGGGTGGGAGTTCCCGTCGAGCGATCTCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100312:239..679+

>mRNA_M-pyrifera_M_contig100312.73.1 ID=mRNA_M-pyrifera_M_contig100312.73.1|Name=mRNA_M-pyrifera_M_contig100312.73.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig100312:239..679+ (Macrocystis pyrifera P11B4 male)
CCGTCTGCCAGAAGTTCTGCACGTTCTTGGTTGTTCCGAGGTTTCGCGGT
TGTCTTTGGCCTAATCCTCGGACTCGGTGCTGCCGAGCTCGGACTCCGTT
TGTTCGGGCAAGAACTGTTTCGCCTGGGGTCAAAGACCTACCTGGTCAAC
GAACAAGACAATGTCAATTTCCACTGCTATCCAGACAACCACAGTGGCGA
TCTTAAGCCGGTTCCTGATGTGAGCCAGGGTTCATGGCGGCTATACGATT
CTTCTCTACCGCCGAATGAGTTGCCACTCGCCGATCTAGAGAACACCCCG
TGGTGCGTTGAATATCGGATGTCACCACAAAAGCTTCGCGATCGGGTTTA
TGCGCCCACGCCACCGCCTGGCGTAATTCGCGTGCTGGGCGTTGGCGACT
CATTCGCCATGGGGGTGGGAGTTCCCGTCGAGCGATCTCTTCCGTCTGCC
AGAAGTTCTGCACGTTCTTGGTTGTTCCGAGGTTTCGCGGTTGTCTTTGG
CCTAATCCTCGGACTCGGTGCTGCCGAGCTCGGACTCCGTTTGTTCGGGC
AAGAACTGTTTCGCCTGGGGTCAAAGACCTACCTGGTCAACGAACAAGAC
AATGTCAATTTCCACTGCTATCCAGACAACCACAGTGGCGATCTTAAGCC
GGTTCCTGATGTGAGCCAGGGTTCATGGCGGCTATACGATTCTTCTCTAC
CGCCGAATGAGTTGCCACTCGCCGATCTAGAGAACACCCCGTGGTGCGTT
GAATATCGGATGTCACCACAAAAGCTTCGCGATCGGGTTTATGCGCCCAC
GCCACCGCCTGGCGTAATTCGCGTGCTGGGCGTTGGCGACTCATTCGCCA
TGGGGGTGGGAGTTCCCGTCGAGCGATCTCTT
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