mRNA_M-pyrifera_M_contig103412.725.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103412.725.1
Unique NamemRNA_M-pyrifera_M_contig103412.725.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103412.725.1 vs. uniprot
Match: A0A518IZ28_9BACT (Uncharacterized protein n=2 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518IZ28_9BACT)

HSP 1 Score: 184 bits (467), Expect = 4.830e-52
Identity = 87/119 (73.11%), Postives = 104/119 (87.39%), Query Frame = 1 
Query:   13 FAADNTASAEEVLASFPAPGTQQAKIAVTVTAGCNNRVGVCPITVLVRAIGPSFGADRELTIELRPRFKLPTHNTFDFRQTIALRQSDSVYQETLTVPMYYPWSHCRVRVLEDGVVLPG 369
            FA+ NTA A+E+LASFP PGT+ +KIA+TVTAG +NRVG+CP+TV+VRAIGPSFGA+R+LTIELRPR   P+HNTFDFRQTI L++SDSVY+ET  VP YY W HCRVRVLE GV+LPG
Sbjct:   34 FASPNTAPADELLASFPPPGTKGSKIAITVTAGESNRVGICPVTVVVRAIGPSFGAERKLTIELRPRLNPPSHNTFDFRQTITLQESDSVYEETFAVPAYYRWYHCRVRVLEAGVLLPG 152
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BLAST of mRNA_M-pyrifera_M_contig103412.725.1 vs. uniprot
Match: A0A517M3B4_9BACT (Uncharacterized protein n=1 Tax=Rosistilla ulvae TaxID=1930277 RepID=A0A517M3B4_9BACT)

HSP 1 Score: 164 bits (414), Expect = 1.230e-44
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 1 
Query:   37 AEEVLASFPAPGTQQAKIAVTVTAGCNNRVGVCPITVLVRAIGPSFGADRELTIELRPRFKLPTHNTFDFRQTIALRQSDSVYQETLTVPMYYPWSHCRVRVLEDGVVLPG 369
            A+E+LA FP  G + + IA+TVTAG   RVGVCP+TV VRAIGPSFGADR+LTIELRPR  LP+ NTFDFRQTI L +SDS+++E L VP+YYPW+ CRVRVLEDGVVLPG
Sbjct:   38 ADELLADFPVDGAKGSGIALTVTAGETKRVGVCPVTVEVRAIGPSFGADRKLTIELRPRSVLPSQNTFDFRQTIQLGESDSIHREVLEVPIYYPWAQCRVRVLEDGVVLPG 148
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BLAST of mRNA_M-pyrifera_M_contig103412.725.1 vs. uniprot
Match: A0A518JW81_9BACT (Uncharacterized protein n=1 Tax=Rosistilla carotiformis TaxID=2528017 RepID=A0A518JW81_9BACT)

HSP 1 Score: 152 bits (385), Expect = 1.250e-40
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:   25 NTASAEEVLASFPAPGTQQAKIAVTVTAGCNNRVGVCPITVLVRAIGPSFGADRELTIELRPRFKLPTHNTFDFRQTIALRQSDSVYQETLTVPMYYPWSHCRVRVLEDGVVLPG 369
            N   A+E+LA FP  G + + IA+TVTAG   RVGVCP+TV VR+IGP+F ADR+LTIELRPR   P  NTFDFRQTI L +SDS+++  L VP+YYPW+ CRVRVLEDG VLPG
Sbjct:   34 NPLLADELLADFPIDGAKGSGIALTVTAGSAQRVGVCPVTVEVRSIGPTFAADRKLTIELRPRSAPPNQNTFDFRQTIDLAESDSIHRVVLEVPIYYPWTQCRVRVLEDGAVLPG 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103412.725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A518IZ28_9BACT4.830e-5273.11Uncharacterized protein n=2 Tax=Rosistilla oblonga... [more]
A0A517M3B4_9BACT1.230e-4471.17Uncharacterized protein n=1 Tax=Rosistilla ulvae T... [more]
A0A518JW81_9BACT1.250e-4064.35Uncharacterized protein n=1 Tax=Rosistilla carotif... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103412contigM-pyrifera_M_contig103412:284..652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.427298-CDS-M-pyrifera_M_contig103412:283..6521622815539.427298-CDS-M-pyrifera_M_contig103412:283..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103412 284..652 +
1692277455.0240984-CDS-M-pyrifera_M_contig103412:283..6521692277455.0240984-CDS-M-pyrifera_M_contig103412:283..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103412 284..652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103412.725.1prot_M-pyrifera_M_contig103412.725.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103412 284..652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103412.725.1

>prot_M-pyrifera_M_contig103412.725.1 ID=prot_M-pyrifera_M_contig103412.725.1|Name=mRNA_M-pyrifera_M_contig103412.725.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MVVRFAADNTASAEEVLASFPAPGTQQAKIAVTVTAGCNNRVGVCPITVL
VRAIGPSFGADRELTIELRPRFKLPTHNTFDFRQTIALRQSDSVYQETLT
VPMYYPWSHCRVRVLEDGVVLPG
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mRNA from alignment at M-pyrifera_M_contig103412:284..652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103412.725.1 ID=mRNA_M-pyrifera_M_contig103412.725.1|Name=mRNA_M-pyrifera_M_contig103412.725.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig103412:284..652+ (Macrocystis pyrifera P11B4 male)
ATGGTCGTCCGCTTCGCTGCGGACAACACGGCCTCTGCAGAAGAAGTGTT
AGCAAGCTTCCCCGCTCCAGGAACTCAGCAAGCCAAAATTGCTGTCACGG
TAACCGCCGGATGCAACAACCGCGTTGGGGTTTGTCCGATAACCGTCCTG
GTTCGCGCGATTGGTCCAAGCTTTGGCGCCGATCGGGAATTGACAATCGA
ACTGCGTCCGCGCTTCAAACTGCCAACCCACAATACGTTCGACTTTCGTC
AAACGATCGCGCTTCGGCAGTCCGATAGCGTGTACCAAGAAACGTTGACC
GTACCGATGTATTACCCGTGGAGTCATTGCCGTGTACGCGTGTTGGAGGA
CGGCGTCGTACTGCCCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103412:284..652+

>mRNA_M-pyrifera_M_contig103412.725.1 ID=mRNA_M-pyrifera_M_contig103412.725.1|Name=mRNA_M-pyrifera_M_contig103412.725.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig103412:284..652+ (Macrocystis pyrifera P11B4 male)
ATGGTCGTCCGCTTCGCTGCGGACAACACGGCCTCTGCAGAAGAAGTGTT
AGCAAGCTTCCCCGCTCCAGGAACTCAGCAAGCCAAAATTGCTGTCACGG
TAACCGCCGGATGCAACAACCGCGTTGGGGTTTGTCCGATAACCGTCCTG
GTTCGCGCGATTGGTCCAAGCTTTGGCGCCGATCGGGAATTGACAATCGA
ACTGCGTCCGCGCTTCAAACTGCCAACCCACAATACGTTCGACTTTCGTC
AAACGATCGCGCTTCGGCAGTCCGATAGCGTGTACCAAGAAACGTTGACC
GTACCGATGTATTACCCGTGGAGTCATTGCCGTGTACGCGTGTTGGAGGA
CGGCGTCGTACTGCCCGGCATGGTCGTCCGCTTCGCTGCGGACAACACGG
CCTCTGCAGAAGAAGTGTTAGCAAGCTTCCCCGCTCCAGGAACTCAGCAA
GCCAAAATTGCTGTCACGGTAACCGCCGGATGCAACAACCGCGTTGGGGT
TTGTCCGATAACCGTCCTGGTTCGCGCGATTGGTCCAAGCTTTGGCGCCG
ATCGGGAATTGACAATCGAACTGCGTCCGCGCTTCAAACTGCCAACCCAC
AATACGTTCGACTTTCGTCAAACGATCGCGCTTCGGCAGTCCGATAGCGT
GTACCAAGAAACGTTGACCGTACCGATGTATTACCCGTGGAGTCATTGCC
GTGTACGCGTGTTGGAGGACGGCGTCGTACTGCCCGGC
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