mRNA_M-pyrifera_M_contig103404.722.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103404.722.1
Unique NamemRNA_M-pyrifera_M_contig103404.722.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103404.722.1 vs. uniprot
Match: A0A2E2C3K3_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C3K3_9PLAN)

HSP 1 Score: 117 bits (292), Expect = 2.890e-29
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 MTKLQVSKSNGKPRKTSAKTWADRQKAAGVRLELSQHKPRNQWKKMVDGKYHYFKHPITKA 183
            MTK+QVSKSNGKPRKTS KTWADRQKAAG RLELSQHKPRNQWKKMVDGK++YFKHPITKA
Sbjct:    1 MTKIQVSKSNGKPRKTSVKTWADRQKAAGARLELSQHKPRNQWKKMVDGKFYYFKHPITKA 61
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BLAST of mRNA_M-pyrifera_M_contig103404.722.1 vs. uniprot
Match: A0A2E2C8M4_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C8M4_9PLAN)

HSP 1 Score: 112 bits (279), Expect = 1.840e-27
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 MTKLQVSKSNGKPRKTSAKTWADRQKAAGVRLELSQHKPRNQWKKMVDGKYHYFKHPITKA 183
            M K  V KSNGKPRKTS KTWADRQKAAGVRLELSQHKPRN WKKMVDGKYHYFKHPITKA
Sbjct:    1 MRKTLVFKSNGKPRKTSVKTWADRQKAAGVRLELSQHKPRNHWKKMVDGKYHYFKHPITKA 61
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103404.722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E2C3K3_9PLAN2.890e-2991.80Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A2E2C8M4_9PLAN1.840e-2790.16Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103404contigM-pyrifera_M_contig103404:1..183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.307904-CDS-M-pyrifera_M_contig103404:0..1831622815539.307904-CDS-M-pyrifera_M_contig103404:0..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103404 1..183 -
1692277454.9884398-CDS-M-pyrifera_M_contig103404:0..1831692277454.9884398-CDS-M-pyrifera_M_contig103404:0..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103404 1..183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103404.722.1prot_M-pyrifera_M_contig103404.722.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103404 1..183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103404.722.1

>prot_M-pyrifera_M_contig103404.722.1 ID=prot_M-pyrifera_M_contig103404.722.1|Name=mRNA_M-pyrifera_M_contig103404.722.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MTKLQVSKSNGKPRKTSAKTWADRQKAAGVRLELSQHKPRNQWKKMVDGK
YHYFKHPITKA
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mRNA from alignment at M-pyrifera_M_contig103404:1..183-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103404.722.1 ID=mRNA_M-pyrifera_M_contig103404.722.1|Name=mRNA_M-pyrifera_M_contig103404.722.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig103404:1..183- (Macrocystis pyrifera P11B4 male)
ATGACAAAACTTCAAGTCTCTAAATCAAACGGCAAGCCCAGAAAAACAAG
TGCCAAGACCTGGGCAGACCGACAAAAGGCTGCTGGGGTAAGACTGGAGC
TATCGCAGCATAAACCCCGCAATCAATGGAAAAAAATGGTAGATGGGAAA
TACCATTATTTCAAGCATCCGATTACTAAAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103404:1..183-

>mRNA_M-pyrifera_M_contig103404.722.1 ID=mRNA_M-pyrifera_M_contig103404.722.1|Name=mRNA_M-pyrifera_M_contig103404.722.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig103404:1..183- (Macrocystis pyrifera P11B4 male)
ATGACAAAACTTCAAGTCTCTAAATCAAACGGCAAGCCCAGAAAAACAAG
TGCCAAGACCTGGGCAGACCGACAAAAGGCTGCTGGGGTAAGACTGGAGC
TATCGCAGCATAAACCCCGCAATCAATGGAAAAAAATGGTAGATGGGAAA
TACCATTATTTCAAGCATCCGATTACTAAAGCAATGACAAAACTTCAAGT
CTCTAAATCAAACGGCAAGCCCAGAAAAACAAGTGCCAAGACCTGGGCAG
ACCGACAAAAGGCTGCTGGGGTAAGACTGGAGCTATCGCAGCATAAACCC
CGCAATCAATGGAAAAAAATGGTAGATGGGAAATACCATTATTTCAAGCA
TCCGATTACTAAAGCA
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