mRNA_M-pyrifera_M_contig10030.70.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10030.70.1
Unique NamemRNA_M-pyrifera_M_contig10030.70.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: D8LQT2_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT2_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.460e-60
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQQ 297
            SQQVNEVEEVIKELKTNPGF+AYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRL TGEHEMIIALH+SFTLVVVQQ
Sbjct:    3 SQQVNEVEEVIKELKTNPGFSAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQQ 101          
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: A0A835ZE71_9STRA (Robl_LC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE71_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.080e-49
Identity = 77/97 (79.38%), Postives = 88/97 (90.72%), Query Frame = 1
Query:    7 QVNEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQQ 297
            Q NEVEEVIKELK NPGF+AYV+MNNDGIVIKYESM Y+ AVHHAALVLDL +K KKYMRE+FEPPDN+VESLRL T EHEMI+A H++FTLVV+Q+
Sbjct:   10 QPNEVEEVIKELKKNPGFSAYVVMNNDGIVIKYESMSYQTAVHHAALVLDLVAKGKKYMREMFEPPDNEVESLRLRTEEHEMIVAQHENFTLVVIQE 106          
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: A0A7S2XUU9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU9_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.340e-47
Identity = 77/99 (77.78%), Postives = 88/99 (88.89%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQQ 297
            SQQ NEVEEVI+ELK NPGF AYVIMNNDGIVIKYE+MEY+ AVHHA LVLDL +KSKKY+RELFEPPDN+VESLRL T ++EMIIA H +FTL V+Q+
Sbjct:    3 SQQPNEVEEVIRELKKNPGFDAYVIMNNDGIVIKYENMEYKTAVHHAHLVLDLCTKSKKYIRELFEPPDNEVESLRLRTADYEMIIAQHGNFTLTVLQK 101          
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: A0A6V1PEV3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PEV3_HETAK)

HSP 1 Score: 150 bits (379), Expect = 4.660e-45
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQQ 297
            SQQ NEVEEVIKELK NPGF  YV+MNNDGIVIK E+MEY+ AVHHA LVLDL +KS+KYMR+L +PPDN+VES+RL T ++EMIIA HD+FTLVV+Q+
Sbjct:    3 SQQPNEVEEVIKELKQNPGFDGYVVMNNDGIVIKCENMEYKTAVHHAHLVLDLCAKSRKYMRDLLDPPDNEVESIRLRTIDYEMIIAQHDNFTLVVIQK 101          
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: A0A7S1XSZ1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSZ1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.600e-38
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQ 294
            SQQVNE EEVIKELK  PGF +Y+I+NNDGIVIK+E+M+YR+A+  A LVLDL +KSKKY+RELFE PDN+VESLRL +   E+I+A H SFTLVV Q
Sbjct:    3 SQQVNEAEEVIKELKMVPGFHSYMILNNDGIVIKWENMQYRSAIQCAHLVLDLVAKSKKYIRELFEVPDNEVESLRLRSKNFELIVAQHGSFTLVVKQ 100          
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: A0A7S2SQX1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQX1_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.470e-37
Identity = 66/98 (67.35%), Postives = 80/98 (81.63%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQ 294
            S Q NEV+EVI+ELK N GF +YVI+ NDGIVIKYE+M+ + AV  A LVLDL +KSKKY++ELFEPPDNDVESLRL T E EMI+A +  ++LVVVQ
Sbjct:    3 SNQTNEVDEVIRELKQNQGFKSYVIIRNDGIVIKYENMDVQKAVQTAHLVLDLCAKSKKYIKELFEPPDNDVESLRLKTLEFEMIVAQYGDYSLVVVQ 100          
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: A0A7S2C4Y6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4Y6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.410e-32
Identity = 59/96 (61.46%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    7 QVNEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQ 294
            Q N+V+EVI +LK+N G   YVI+NNDGIVIKYE M+Y  AV HA LVLDL +KSK Y R +FE P+N+VES+RL T E EMII+   +FTLV++Q
Sbjct:    5 QPNQVDEVIHDLKSNVGAKQYVILNNDGIVIKYEGMDYSRAVQHAYLVLDLCAKSKSYFRGMFEAPENEVESIRLKTNEFEMIISQIQNFTLVMIQ 100          
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: A0A6S8XD14_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XD14_9STRA)

HSP 1 Score: 117 bits (293), Expect = 6.070e-32
Identity = 58/103 (56.31%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFAAYVIMNNDGIVIKYES----MEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQQ 297
            SQQ+NEVEE++KEL+ NPGF AY+I+NNDGIVIK++     M Y+ AV ++  VLDL +KSK ++++LFEP DN VE++RL T E+E+I A   +FTLVV+Q+
Sbjct:    3 SQQINEVEEMLKELRKNPGFKAYLILNNDGIVIKWDQEGSPMPYQKAVQYSHHVLDLCNKSKAHIKDLFEPQDNQVENIRLRTDEYELIAAQQANFTLVVIQE 105          
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: T0S3Y7_SAPDV (Robl_LC7 domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0S3Y7_SAPDV)

HSP 1 Score: 117 bits (292), Expect = 9.680e-32
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 1
Query:   13 NEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQ 294
            NEVEE IK LK  PGF +Y++MNNDGIVIKYE+MEY+ AV HA  +L+L ++SKKY+ +LF+  ++D+E LRL T  HEMIIA +  FTLVV+Q
Sbjct:    7 NEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLTKLFDAAESDIECLRLRTKLHEMIIAQYAKFTLVVLQ 100          
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Match: H3H541_PHYRM (Robl_LC7 domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3H541_PHYRM)

HSP 1 Score: 116 bits (291), Expect = 1.730e-31
Identity = 56/96 (58.33%), Postives = 79/96 (82.29%), Query Frame = 1
Query:   13 NEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELF-EPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQQ 297
            NE+EEVIK+LK+ PGF++Y++MNNDGIV+KYE++EY+ A+ HA  VL L  ++KK++++LF +P D+++E LRL T  HEMIIA H  FTLVV+QQ
Sbjct:    7 NEIEEVIKQLKSKPGFSSYILMNNDGIVVKYENVEYKEAIMHAYHVLSLYGRTKKHLQKLFPDPSDSEIEWLRLRTKMHEMIIAQHLRFTLVVLQQ 102          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10030.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQT2_ECTSI1.460e-6096.97Robl_LC7 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZE71_9STRA2.080e-4979.38Robl_LC7 domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2XUU9_9STRA2.340e-4777.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1PEV3_HETAK4.660e-4573.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1XSZ1_9STRA1.600e-3869.39Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SQX1_9STRA5.470e-3767.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C4Y6_9STRA1.410e-3261.46Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6S8XD14_9STRA6.070e-3256.31Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
T0S3Y7_SAPDV9.680e-3260.64Robl_LC7 domain-containing protein n=4 Tax=Saprole... [more]
H3H541_PHYRM1.730e-3158.33Robl_LC7 domain-containing protein n=19 Tax=Phytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10030contigM-pyrifera_M_contig10030:3445..5177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue4.5e-46
Seed eggNOG ortholog2880.D8LQT2
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
Ec32 ortholog descriptionDynein light chain-related
Ec32 orthologEc-24_002180.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Exons3
Model size306
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10030.70.1prot_M-pyrifera_M_contig10030.70.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10030 3445..5177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.8619974-CDS-M-pyrifera_M_contig10030:3444..35321622815498.8619974-CDS-M-pyrifera_M_contig10030:3444..3532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10030 3445..3532 +
1692277439.1091502-CDS-M-pyrifera_M_contig10030:3444..35321692277439.1091502-CDS-M-pyrifera_M_contig10030:3444..3532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10030 3445..3532 +
1622815498.8730865-CDS-M-pyrifera_M_contig10030:4379..44981622815498.8730865-CDS-M-pyrifera_M_contig10030:4379..4498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10030 4380..4498 +
1692277439.1233072-CDS-M-pyrifera_M_contig10030:4379..44981692277439.1233072-CDS-M-pyrifera_M_contig10030:4379..4498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10030 4380..4498 +
1622815498.8831623-CDS-M-pyrifera_M_contig10030:5078..51771622815498.8831623-CDS-M-pyrifera_M_contig10030:5078..5177Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10030 5079..5177 +
1692277439.1309578-CDS-M-pyrifera_M_contig10030:5078..51771692277439.1309578-CDS-M-pyrifera_M_contig10030:5078..5177Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10030 5079..5177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10030.70.1

>prot_M-pyrifera_M_contig10030.70.1 ID=prot_M-pyrifera_M_contig10030.70.1|Name=mRNA_M-pyrifera_M_contig10030.70.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
SQQVNEVEEVIKELKTNPGFAAYVIMNNDGIVIKYESMEYRAAVHHAALV
LDLASKSKKYMRELFEPPDNDVESLRLSTGEHEMIIALHDSFTLVVVQQV
S*
back to top

mRNA from alignment at M-pyrifera_M_contig10030:3445..5177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10030.70.1 ID=mRNA_M-pyrifera_M_contig10030.70.1|Name=mRNA_M-pyrifera_M_contig10030.70.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1733bp|location=Sequence derived from alignment at M-pyrifera_M_contig10030:3445..5177+ (Macrocystis pyrifera P11B4 male)
TCCCAGCAGGTGAACGAGGTGGAGGAGGTGATCAAGGAGCTCAAGACCAA CCCAGGGTTTGCAGCGTACGTCATCATGAACAACGATGGTAAGCTAAAAA GAGCGAAACTGTTCGAAGCCGTGTTATAACGTTTGGCCTAGCGTATTTTT TTTGGAAATGGGTTGAATTATCCTTGACTCCAAACCCTAAGCCTAGCCCC GAGGAGGAGGGGAGGAGGAGGAGGAGGAGGAAGAGCGAAAAATAATGCTG CCTAGTAAAATCGGCTGGCAATATTAGGGAATGGTAGCAGAGGAAAAAAA CAGCGGCACACAGGCGGGGAACTGCTAACAGATAGTTCGATTGTGGTAGA GGGAGGTGGGTAATGATGGCGAAAAAACACGAGAAACACAATCAAAGAAA ATAGAGAAGCGGTGGAAAAGGACACTATATCTCAGGGTGTGTGTTTTCGA TTGGGTAGACGGGAATGCTATATTCCCATCAACTCGATCTATGATTGGTT GCTGTCCAAGCTCCCTTCGGTTCCCGATTCGTTTGGCGCCAGTCGAGCTT ACCACTGATTCGAAAAAATGGCTGGGCGCACGCTGGGAACGAGACAAAAG ACTCAACGCTACGAGCAACTGGTTGAGTATGATGGGCTTAGGGTTATTCC TAGGGCTTGTTTTTCTCGTACACAGAGTGTGACAACAATTTTATCGAACA AGTGGTAAGCTACCCTCTTCGGTGCTCCGTTCGCTTGCACCGGCGTCAAG CATCAACCATTGTCCACCCGTCCGTTCTACGTACGTACTTTACGTCAACC ACATACCGAAGTATGCATCACACCAAGCTCGCATAGACTAAGGTTTGAAG AAATCTTGATTTTTTTCGTTCCTACAGCTGAGGTGTTTCTTTTTTCAAAT AATATCACCGCGCACGCCTTTAAAATCTCGGCCAGGGATCGTGATCAAGT ACGAGAGCATGGAGTACCGAGCGGCCGTGCACCATGCCGCTCTCGTTCTC GACCTGGCCAGCAAATCTAAAAAGTACATGCGGGAGCTGTTCGAGCCACC GGATGTGAGATGAGGAGGCGTTCACGTAAATATATGTGTGTGGCTTGTTT TGCACCAGACACATTTGTCGTATCATATCTGGTATGTGTGCGTAGTACGT TTTCACAGAGTATCCTGACAGTACTGGTAAAAATAGTTGAGTGATAAACT TGTAGTATACTGGGCAGTGTAACGGGCAGTGCACTGGTCTCGAGTTTCCT GGGGAGTCTCGTTTTTTTTGCTTACTTGCTTTCCTTCCTTGTTCGCACTG TTCACGCCATTTCCTTTGACTACGTTCCTCGCTTGCTTCTTTCCTTGGAT TGTCTTGCTTTGCGTGCGTGCTTGATTGATTCGCTCGCTTCTTGGGCTTG CCGGTGTTGTTACGTTGGTTTGCCGTAAGTCCTTTACACGCCTTTTTTTC TTTCGATTATTGCATTTTCTAGCGCAACTTTCTCTGGCTTTGCTGCGTGC TTATCCCCTGTGTGTTGCATTGCTTGCGCTACTTTTCCTTGACTGCGTTG CTCGCTTGCTTGCTTCCTTTGCTTCCTTCGCATTACCATGCGTTGCTTGC GTTTCCCACCTATCTCTTTGGCTTCCTATCTCAGAACGACGTGGAATCGC TACGGTTGAGCACGGGAGAACACGAGATGATCATCGCCTTGCACGACAGC TTCACGCTCGTAGTAGTACAACAGGTGAGCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10030:3445..5177+

>mRNA_M-pyrifera_M_contig10030.70.1 ID=mRNA_M-pyrifera_M_contig10030.70.1|Name=mRNA_M-pyrifera_M_contig10030.70.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig10030:3445..5177+ (Macrocystis pyrifera P11B4 male)
TCCCAGCAGGTGAACGAGGTGGAGGAGGTGATCAAGGAGCTCAAGACCAA
CCCAGGGTTTGCAGCGTACGTCATCATGAACAACGATGTCCCAGCAGGTG
AACGAGGTGGAGGAGGTGATCAAGGAGCTCAAGACCAACCCAGGGTTTGC
AGCGTACGTCATCATGAACAACGATGGGATCGTGATCAAGTACGAGAGCA
TGGAGTACCGAGCGGCCGTGCACCATGCCGCTCTCGTTCTCGACCTGGCC
AGCAAATCTAAAAAGTACATGCGGGAGCTGTTCGAGCCACCGGATGGATC
GTGATCAAGTACGAGAGCATGGAGTACCGAGCGGCCGTGCACCATGCCGC
TCTCGTTCTCGACCTGGCCAGCAAATCTAAAAAGTACATGCGGGAGCTGT
TCGAGCCACCGGATAACGACGTGGAATCGCTACGGTTGAGCACGGGAGAA
CACGAGATGATCATCGCCTTGCACGACAGCTTCACGCTCGTAGTAGTACA
ACAGGTGAGCTAAAACGACGTGGAATCGCTACGGTTGAGCACGGGAGAAC
ACGAGATGATCATCGCCTTGCACGACAGCTTCACGCTCGTAGTAGTACAA
CAGGTGAGCTAA
back to top