mRNA_M-pyrifera_M_contig103293.696.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103293.696.1
Unique NamemRNA_M-pyrifera_M_contig103293.696.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: H3GQG8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQG8_PHYRM)

HSP 1 Score: 114 bits (286), Expect = 2.380e-29
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   22 QVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPND 315
            QV IADRSPFSAVLYS +G  LLEPVIR+ + EV K A V   TV+V+V R+LLW RI ARLA EP R R NE    WME  + FYE F+WDL V ND
Sbjct:   80 QVFIADRSPFSAVLYSAKG-HLLEPVIREQMREVQKFAGVQFYTVHVQVERELLWSRICARLALEPERLRLNEHKREWMEQTLAFYESFQWDLTVAND 176          
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: F4QDN1_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QDN1_CAVFA)

HSP 1 Score: 114 bits (285), Expect = 2.420e-29
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   13 PAPQVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPNDGEL 324
            P   V IADRSP+SAVLY+R  G LL+PVIR  I E+ K A + + TVY++V +++LWDRI  RLAREP R  Y E ++ WME ++DFY+  +WDL V N+  +
Sbjct:  101 PLSTVYIADRSPYSAVLYARDHGRLLDPVIRIQIEELRKYADIDIRTVYLKVSKNMLWDRIEKRLAREPSRRLYGEHEYKWMEDSVDFYDSQKWDLTVSNNDNI 204          
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: M4B6D2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6D2_HYAAE)

HSP 1 Score: 112 bits (281), Expect = 7.210e-29
Identity = 59/98 (60.20%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   22 QVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPND 315
            QV IADRSPFSAVLYS  G  LLEPVIR  + EV   AHV   TV+V+V R+LLW RI AR+A EP R R NE    WM+  +DFYE F WD  V ND
Sbjct:   38 QVFIADRSPFSAVLYSANG-RLLEPVIRAQMKEVQDFAHVQFYTVHVQVERELLWRRICARIALEPERLRLNEHKREWMDETLDFYESFAWDFTVAND 134          
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: A0A5A8CJT7_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CJT7_CAFRO)

HSP 1 Score: 113 bits (282), Expect = 2.410e-28
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   25 VVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPNDGE 321
            V +ADRSPFSAV YSR+ G+LLEPVIR  I E+A+EA +H+ T ++ V  +LLW RI +RL  EP R +Y EG+  WM+T   +Y  F WD+ + N  +
Sbjct:   76 VFVADRSPFSAVFYSRRDGALLEPVIRSQIGEIAEEAGIHIITAHLAVDPELLWSRIQSRLKLEPFRVKYREGEREWMDTTQSWYNGFDWDVTIDNGSQ 174          
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: A0A8J4V0D8_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V0D8_9MYCE)

HSP 1 Score: 108 bits (271), Expect = 2.230e-27
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   19 PQVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPN 312
            P + IADRSP+SA+LYS+  G  L+P+I + I E+ K   + + TVY+R+ +DLLW RI  RL +EP R +YNE ++ WME  ++FYE   WD +V N
Sbjct:   86 PSIYIADRSPYSAILYSKNKGHYLDPIISEQIKELKKYTDIDIKTVYLRIDKDLLWKRIQNRLLKEPERVKYNEDNYQWMEETVNFYEGREWDFIVDN 183          
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: K3WCY1_GLOUD (AAA_28 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCY1_GLOUD)

HSP 1 Score: 109 bits (273), Expect = 2.710e-27
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   22 QVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPND 315
            QV IADRSPFSAVLYS   G LLEPVIR  + EV ++ +V   TV++ V  +LLW RI+ RL REP R R+NE   SWM+  + FY  F+WDL V ND
Sbjct:   87 QVYIADRSPFSAVLYS-SNGHLLEPVIRAQMQEVEEQTNVQFYTVHISVEPELLWSRIIRRLEREPERIRFNEHKRSWMDETLTFYNAFKWDLTVNND 183          
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: G4Z2B5_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4Z2B5_PHYSP)

HSP 1 Score: 109 bits (273), Expect = 3.080e-27
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   22 QVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPND 315
            QV IADRSPFSAVLYS +G  LLEPVIR+ + EV   A V   TV+V+V R+LLW RI+ARL  EP R R NE    WME  + FYE F WD+ V ND
Sbjct:   79 QVFIADRSPFSAVLYSAKG-HLLEPVIREQMKEVQDFARVQFYTVHVQVERELLWRRIIARLELEPERLRLNEHKREWMEETLAFYEGFNWDMTVAND 175          
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: A0A5D6YBX5_9STRA (AAA_28 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBX5_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.780e-27
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   22 QVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPND 315
            QV IADRSPFSAVLYS +G  LLEPVIR+ + EV ++++V   TV+V V  +LLW RI+ RL REP R R+NE   +WM+  + FY  F+WDL V ND
Sbjct:   88 QVYIADRSPFSAVLYSSKG-HLLEPVIREQMREVEQQSNVQFYTVHVAVAPELLWSRIVRRLEREPERIRFNEHKRAWMDETLAFYNAFQWDLTVAND 184          
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: A0A812KCK5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KCK5_9DINO)

HSP 1 Score: 110 bits (275), Expect = 7.420e-27
Identity = 54/98 (55.10%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   19 PQVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPN 312
            P VV ADRSP SAV Y   G  LLEPVIR H+ EV ++A VH+ T +V V ++LLW+RI ARL REPHRAR  EG   WM+  + +Y  F WD+ V N
Sbjct:   77 PAVVFADRSPLSAVYYGHSG-HLLEPVIRAHMVEVEQQADVHIVTAHVLVEQELLWERIQARLLREPHRARLQEGRKQWMQDTLTWYTDFEWDITVRN 173          
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Match: A0A662WDX8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDX8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.040e-26
Identity = 58/98 (59.18%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   22 QVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVATVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDLVVPND 315
            QV IADRSPFSAVLYS  G  LL PVIR+ + EV + A V   TV+V+V R+LLW RI ARL  EP R R NE    WME  + FYE F WDL V ND
Sbjct:  112 QVFIADRSPFSAVLYSAHG-QLLAPVIREQMREVERFAGVQFYTVHVQVERELLWQRICARLQVEPERLRLNEHKREWMEETLAFYENFNWDLTVAND 208          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103293.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
H3GQG8_PHYRM2.380e-2962.24Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
F4QDN1_CAVFA2.420e-2951.92Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
M4B6D2_HYAAE7.210e-2960.20Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A5A8CJT7_CAFRO2.410e-2850.51Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
A0A8J4V0D8_9MYCE2.230e-2747.96Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
K3WCY1_GLOUD2.710e-2756.12AAA_28 domain-containing protein n=1 Tax=Globispor... [more]
G4Z2B5_PHYSP3.080e-2759.18Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A5D6YBX5_9STRA3.780e-2756.12AAA_28 domain-containing protein n=1 Tax=Pythium b... [more]
A0A812KCK5_9DINO7.420e-2755.10Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A662WDX8_9STRA2.040e-2659.18Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103293contigM-pyrifera_M_contig103293:40..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3.9e-24
Seed eggNOG ortholog164328.Phyra79040
Hectar predicted targeting categoryother localisation
EggNOG OGs2AANY@1,2RYMI@2759,3Q844@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.938738-CDS-M-pyrifera_M_contig103293:39..3631622815537.938738-CDS-M-pyrifera_M_contig103293:39..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103293 40..363 +
1692277454.4192846-CDS-M-pyrifera_M_contig103293:39..3631692277454.4192846-CDS-M-pyrifera_M_contig103293:39..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103293 40..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103293.696.1prot_M-pyrifera_M_contig103293.696.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103293 40..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103293.696.1

>prot_M-pyrifera_M_contig103293.696.1 ID=prot_M-pyrifera_M_contig103293.696.1|Name=mRNA_M-pyrifera_M_contig103293.696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
RGSSPAPQVVIADRSPFSAVLYSRQGGSLLEPVIRQHIAEVAKEAHVHVA
TVYVRVPRDLLWDRILARLAREPHRARYNEGDHSWMETAMDFYEKFRWDL
VVPNDGEL
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mRNA from alignment at M-pyrifera_M_contig103293:40..363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103293.696.1 ID=mRNA_M-pyrifera_M_contig103293.696.1|Name=mRNA_M-pyrifera_M_contig103293.696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig103293:40..363+ (Macrocystis pyrifera P11B4 male)
CGGGGCAGCTCGCCCGCGCCGCAGGTGGTGATTGCGGACCGCTCTCCGTT CAGCGCAGTGCTGTATTCGCGGCAAGGCGGGAGTTTGCTGGAGCCTGTGA TTCGGCAGCACATCGCAGAGGTGGCCAAGGAGGCACACGTGCACGTGGCG ACGGTGTATGTGCGCGTGCCCCGTGACCTGTTGTGGGACCGAATTCTGGC CCGACTGGCGCGGGAACCACACCGAGCCAGGTACAATGAAGGGGACCACA GCTGGATGGAGACGGCCATGGACTTTTACGAAAAGTTCCGCTGGGACCTC GTAGTGCCAAACGACGGTGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103293:40..363+

>mRNA_M-pyrifera_M_contig103293.696.1 ID=mRNA_M-pyrifera_M_contig103293.696.1|Name=mRNA_M-pyrifera_M_contig103293.696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig103293:40..363+ (Macrocystis pyrifera P11B4 male)
CGGGGCAGCTCGCCCGCGCCGCAGGTGGTGATTGCGGACCGCTCTCCGTT
CAGCGCAGTGCTGTATTCGCGGCAAGGCGGGAGTTTGCTGGAGCCTGTGA
TTCGGCAGCACATCGCAGAGGTGGCCAAGGAGGCACACGTGCACGTGGCG
ACGGTGTATGTGCGCGTGCCCCGTGACCTGTTGTGGGACCGAATTCTGGC
CCGACTGGCGCGGGAACCACACCGAGCCAGGTACAATGAAGGGGACCACA
GCTGGATGGAGACGGCCATGGACTTTTACGAAAAGTTCCGCTGGGACCTC
GTAGTGCCAAACGACGGTGAGCTGCGGGGCAGCTCGCCCGCGCCGCAGGT
GGTGATTGCGGACCGCTCTCCGTTCAGCGCAGTGCTGTATTCGCGGCAAG
GCGGGAGTTTGCTGGAGCCTGTGATTCGGCAGCACATCGCAGAGGTGGCC
AAGGAGGCACACGTGCACGTGGCGACGGTGTATGTGCGCGTGCCCCGTGA
CCTGTTGTGGGACCGAATTCTGGCCCGACTGGCGCGGGAACCACACCGAG
CCAGGTACAATGAAGGGGACCACAGCTGGATGGAGACGGCCATGGACTTT
TACGAAAAGTTCCGCTGGGACCTCGTAGTGCCAAACGACGGTGAGCTG
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