mRNA_M-pyrifera_M_contig103292.695.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103292.695.1
Unique NamemRNA_M-pyrifera_M_contig103292.695.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A5A8D7R4_CAFRO (ERCC4 domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D7R4_CAFRO)

HSP 1 Score: 137 bits (346), Expect = 8.040e-34
Identity = 82/206 (39.81%), Postives = 123/206 (59.71%), Query Frame = 1
Query:   37 ELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVLGNAVDAWHLRWNMRLSGLPISQLPVHISATTPAAERRRAYSRGGIVVLSARIGIVDLLTRRFGK--VGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDS--QAPEVVELAQPLSPRMQTLQR 642
            E+ A D  LV+  GMGL  ++ +F+         + VLG + D+  +R ++  +G+    LPV I+    AA R  AY RGG V++++RI ++DLLTRR     V G+LV    R TE+S EAFC+R+ R+ +P  +VKG S  P  + SG +R E  L++L + QL LWPRF +     L +  ++PEVV+L+ PL+P +  LQR
Sbjct:   70 EVLAEDGLLVVARGMGLRLLLERFIRVFCGGRSLVAVLGCSHDSDTIRASLSEAGVSEDHLPVAITNEMSAAARVSAYQRGGPVIVTSRILVIDLLTRRLPAEAVAGMLVAGAHRLTEASSEAFCLRLFRDANPSGFVKGFSDDPGRLASGFNRLESSLKLLGVRQLHLWPRFHALAQAGLTAPRRSPEVVDLSVPLTPCVLALQR 275          
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A2P4XA07_9STRA (DNA repair endonuclease XPF n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XA07_9STRA)

HSP 1 Score: 119 bits (299), Expect = 5.420e-29
Identity = 74/212 (34.91%), Postives = 114/212 (53.77%), Query Frame = 1
Query:   10 LPFQSKASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVLGNAVDAWHLRWNMRLSGLPISQLPVHISATTPAAERRRAYSRGGIVVLSARIGIVDLLTRRF--GKVGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVELAQPLSPRMQTLQ 639
            LP++    +EL+  D  LVMG G+GL  V+  F+         +L L     A  LR  +   GL    LP  + A     ER++ Y RGG+  ++ARI +VDLL+     G + G+LV      TE+S EAF +R+ RE++ D ++KG      A++SG +R E++L+ L +  + L+PRF   V+  L+   PEV E+    SP M+ +Q
Sbjct:   29 LPYERDVVEELYTQDGVLVMGRGLGLLRVLASFVRLYCSPRCLVLCLNANEQAATLRRLVLTLGLDRRLLPRVVDARNNLNERQQMYKRGGVFFVTARILVVDLLSNHVDPGSISGLLVNDAHHVTETSIEAFILRLYRERNRDGFIKGFCDDSVALSSGFNRVEQVLKHLYVRNVFLYPRFHVAVNSCLEKHQPEVYEIEVAFSPSMKIMQ 240          
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A1X7VB04_AMPQE (ERCC4 domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VB04_AMPQE)

HSP 1 Score: 124 bits (310), Expect = 5.440e-29
Identity = 72/217 (33.18%), Postives = 126/217 (58.06%), Query Frame = 1
Query:   10 LPFQSKASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVLGNA-VDAWHLRWNMRLS-GLPISQLPVHISATTPAAERRRAYSRGGIVVLSARIGIVDLLTR--RFGKVGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVELAQPLSPRMQTLQRYI 648
            L F+++   EL + D  +++ +G+GL+ +  KFL   +     +LV+G++ +   H + ++  S    I Q+P  ++   PA ER   Y +GG++ +++RI +VD+L +     KV G+LV    R T+SS EAF +R+ RE +   ++KG S  P   T+G  + ER++R L +  + LWPRF + V+ SL+   P+V+EL Q ++P M  +Q  +
Sbjct:    6 LDFENENFLELVSEDGLIILAKGLGLDRLFMKFLKLHSDPRNLVLVIGSSTLYEDHFKNDIAASLSNNIQQIPRSVTNEIPAKEREELYLKGGVLFVTSRILVVDMLRKVCPVDKVAGILVYNCHRVTDSSSEAFILRLYREGNKTGFIKGFSDCPEHFTTGFCQLERIMRNLFVKNVYLWPRFHAVVNSSLERHQPDVIELRQQMTPSMTAIQHSV 222          
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.050e-28
Identity = 77/216 (35.65%), Postives = 122/216 (56.48%), Query Frame = 1
Query:   28 ASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETI-------LVLGNAVDAWHLRWNMRLSGLPISQLPVHISATTPAAERRRAYSRGGIVVLSARIGIVDLLTRRF--GKVGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVELAQPLSPRMQTLQRYI 648
            A ++L   D  LVM  G+G + +I +FL R A   ET+       L + +  D   L   +   G+   QLP  I+  T + +R+  Y++GG+ ++++RI IVDLLT+R    ++ G++V +  R T+ S EAF +R+ REQ+   ++K  S  P A+  G  R ER+L+   L ++ LWPR+   V   L    PEVVE+AQ L+P M+ +Q+ I
Sbjct:    9 AFEDLMDEDGLLVMARGLGKQLLIARFLRRHA---ETLPGACVLCLHMSSLADNQLLTRALLAEGMAPEQLPRIITNDTVSTDRQALYTQGGVFLVTSRILIVDLLTKRLDVSRIRGMVVNHAHRVTDVSIEAFIIRVYREQNRTGFLKAFSDEPEALLQGFGRLERVLKYCYLRRVYLWPRYHVAVKNFLSRHEPEVVEMAQALTPAMKAVQQAI 221          
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A1Y2GAL2_9FUNG (DNA repair protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GAL2_9FUNG)

HSP 1 Score: 122 bits (306), Expect = 1.850e-28
Identity = 75/219 (34.25%), Postives = 128/219 (58.45%), Query Frame = 1
Query:   10 LPFQSKASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVLG-NAVDAWHLRWNMRLSGLPISQLPVH---ISATTPAAERRRAYSRGGIVVLSARIGIVDLLTRRFG--KVGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVELAQPLSPRMQTLQRYI 648
            L FQ +   EL A D  L+M +G+GL  +I  FL   +  +  +L++  NA +   LR ++  S   + +   +   I++    AER   Y  GGI+ +++RI ++DLLT R     + G+LV    R T +S EAF +R++R+ + +A++K  S +P + T G    E+ L++L L +++LWPRF   V+ESL+S + +V+E+ QP++  M+T+Q  I
Sbjct:    6 LAFQKEIVAELVAEDALLIMAKGLGLRSIIGAFLKIYSQPQNLVLLINTNAEEEAELRDDLARS-TDVGKGGAYFRTITSEQSLAERNDLYRYGGIMAVTSRILVMDLLTARIPIHLITGILVANAHRVTATSTEAFILRLLRQSNSEAFIKAFSDQPESFTVGFATLEKTLKLLYLRKVNLWPRFHVTVTESLESHSTDVIEIRQPMTKAMKTIQAAI 223          
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A3M6VFJ6_9STRA (ERCC4 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFJ6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.880e-28
Identity = 74/212 (34.91%), Postives = 115/212 (54.25%), Query Frame = 1
Query:   10 LPFQSKASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVLGNAVDAWHLRWNMRLSGLPISQLPVHISATTPAAERRRAYSRGGIVVLSARIGIVDLLTRRF--GKVGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVELAQPLSPRMQTLQ 639
            LP++ +  +EL+A D  LVMG G+GL  V+  F+         +L L     A  LR +M   GL    LP  + A     ER++ Y RGG+  ++ARI +VD L+       V G+LV      TE+S EAF +R+ RE++ + ++KG      A++SG +R E++L+ L +  + L+PRF   V+  L+   PEV E+    SP M+ +Q
Sbjct:   31 LPYEKEIVEELYAQDGVLVMGRGLGLLRVLASFVRLYCSPRSLVLCLNVNDQAATLRRSMLALGLDRHLLPRVVDARNSLNERQQMYKRGGVFFVTARILVVDFLSNHMDPASVSGLLVNDAHHVTETSMEAFILRLYRERNREGFIKGFCDDSVALSSGFNRMEQVLKHLYVRNVFLYPRFHVAVNSCLEKHQPEVYEIEVAFSPSMKIMQ 242          
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A6G0KZF6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0KZF6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.320e-28
Identity = 73/212 (34.43%), Postives = 116/212 (54.72%), Query Frame = 1
Query:   10 LPFQSKASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVLGNAVDAWHLRWNMRLSGLPISQLPVHISATTPAAERRRAYSRGGIVVLSARIGIVDLLTRRF--GKVGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVELAQPLSPRMQTLQ 639
            LP++ +  +EL+A D  LV+G G+GL  V+  F+         +L L     A  LR  +   GL    LP  + A     ER++ Y RGG+  ++ARI +VDLL+     G + G+LV      TE+S EAF +R+ RE++ + ++KG      A++SG +R E++L+ L +  + L+PRF   +   L+   PEV E+    SP M+T+Q
Sbjct:   34 LPYEREIVEELYAQDGVLVLGRGLGLLRVLASFVRLYCSPRSLVLCLNANEQAATLRRLVLALGLDRRLLPRVVDARINLNERQQMYKRGGVFFVTARILVVDLLSNHVDPGTISGLLVNDAHHVTETSIEAFILRLYRERNREGFIKGFCGDSVALSSGFNRVEQVLKHLYVRDVFLYPRFHVAIHSCLEKYQPEVYEIEVAFSPSMKTMQ 245          
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A4P9XS52_9FUNG (ERCC4 domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XS52_9FUNG)

HSP 1 Score: 122 bits (305), Expect = 2.540e-28
Identity = 77/213 (36.15%), Postives = 122/213 (57.28%), Query Frame = 1
Query:   10 LPFQSKASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVLGNAVDAWHLRWNMRLSGLPISQLPVHISATTPAAERR-RAYSRGGIVVLSARIGIVDLLTRRFGK--VGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVELAQPLSPRMQTLQ 639
            LPFQ +   EL   D  LV+ +G+GL+ ++  FL +LA    T++VL NA      R  + L+ L  +Q+ +++      AE R  AY RGG++ +++RI +VDLL +R     + G+LV   ++ T  S EAF +R+ R+++ + ++K  +  P     G    E  L+ L L ++ LWPRF   V ESLD+ + EVVEL QP++ RM  +Q
Sbjct:    5 LPFQRQIFTELLEEDGLLVLAKGLGLQRLLAAFL-QLAAERHTLVVLLNAPADEEERLRLELAELTSAQVTLNVLKNDVKAEDRVEAYRRGGLISVTSRIFVVDLLKKRVPVPLITGILVANAQKVTPYSLEAFVLRLYRQENAEGFIKAFTESPETFGVGFAPLETTLKALQLRKVHLWPRFHVAVKESLDT-SEEVVELRQPMTDRMMHIQ 215          
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A2D4BR62_PYTIN (DNA repair endonuclease XPF, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR62_PYTIN)

HSP 1 Score: 121 bits (303), Expect = 5.030e-28
Identity = 74/215 (34.42%), Postives = 118/215 (54.88%), Query Frame = 1
Query:   10 LPFQSKASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVLGNAVDAWHLRWNMRLSGLPISQLPVHISATTPAAERRRAYSRGGIVVLSARIGIVDLLTRRFGK--VGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVELAQPLSPRMQTLQRYI 648
            LP +    +EL   D   VMG+G+GL  V+  F+   A  +  +L L  +  A          GL    LP  + A +  +ER + Y +GG  ++++RI +VDLL ++     + G+LV    R TE+S EAF +R+ R+ + + ++K  S  P A+++G  R E++L  L L Q+SL+PRF  ++ ESL  + P V E+    SPRM+T+Q  I
Sbjct:  542 LPHERAIVEELQRQDALXVMGKGLGLYRVLSYFVRLYASPQTLVLGLNMSEYAAQFHQLALALGLDRRFLPKVLDAKSSVSERMQLYKQGGCCLVTSRILVVDLLNQKLDSKMITGLLVNDAHRVTETSVEAFVLRVYRDANREGFIKAFSDDPVALSAGFSRMEQVLXQLYLRQVSLYPRFHVDIHESLSRRQPAVYEIEVAFSPRMKTMQEAI 756          
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Match: A0A1Z5LEM3_ORNMO (DNA repair endonuclease xp-f-mei-9-rad1 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LEM3_ORNMO)

HSP 1 Score: 120 bits (302), Expect = 6.300e-28
Identity = 69/215 (32.09%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    4 PLLPFQSKASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVLGNAVDAWHLRWNMR-LSGLPISQLPVHISATTPAAERRRAYSRGGIVVLSARIGIVDLLTRR--FGKVGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKGVSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVELAQPLSPRMQTLQ 639
            PLL F+++   +LH  D  +++ +G+G+E ++   +   +     +L+LG   DA    + +R L    ++ LP  I+A     ER   Y  GG++ +++RI +VD+L  R     + G++V    +  ES QEAF +R+ R+++   ++KG+S    A T G  + +R++R L + +L LWPRF+++V  SL+ + PEV+E   P++P M T+Q
Sbjct:    2 PLLEFETQMFLDLHNEDGLVIVAKGLGVERLLLSLIKVNSDPGNLVLILGT--DANEEEFFIRQLEDENVNPLPRSITAECSTKERNDVYMSGGVLFVTSRILVVDMLMERVPIDLITGIIVYRAHKTLESCQEAFILRLYRQKNKKGFIKGLSDNAVAFTQGFCQVQRMMRNLFVKKLFLWPRFQADVISSLEKRKPEVLEFRVPMTPAMNTIQ 214          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103292.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D7R4_CAFRO8.040e-3439.81ERCC4 domain-containing protein n=4 Tax=Cafeteria ... [more]
A0A2P4XA07_9STRA5.420e-2934.91DNA repair endonuclease XPF n=1 Tax=Phytophthora p... [more]
A0A1X7VB04_AMPQE5.440e-2933.18ERCC4 domain-containing protein n=2 Tax=Amphimedon... [more]
A0A4D9D5Y9_9STRA1.050e-2835.65ERCC4 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A1Y2GAL2_9FUNG1.850e-2834.25DNA repair protein n=1 Tax=Lobosporangium transver... [more]
A0A3M6VFJ6_9STRA1.880e-2834.91ERCC4 domain-containing protein n=2 Tax=Peronospor... [more]
A0A6G0KZF6_9STRA2.320e-2834.43Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A4P9XS52_9FUNG2.540e-2836.15ERCC4 domain-containing protein n=1 Tax=Thamnoceph... [more]
A0A2D4BR62_PYTIN5.030e-2834.42DNA repair endonuclease XPF, putative n=1 Tax=Pyth... [more]
A0A1Z5LEM3_ORNMO6.300e-2832.09DNA repair endonuclease xp-f-mei-9-rad1 (Fragment)... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103292contigM-pyrifera_M_contig103292:5..652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score131.0
Seed ortholog evalue6.9e-28
Seed eggNOG ortholog7918.ENSLOCP00000009117
Preferred nameERCC4
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000228,GO:0000280,GO:0000428,GO:0000712,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000781,GO:0000784,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001709,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006295,GO:0006296,GO:0006298,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007143,GO:0007276,GO:0007292,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009892,GO:0009987,GO:0010605,GO:0010639,GO:0016043,GO:0016321,GO:0016591,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030716,GO:0030880,GO:0031323,GO:0031324,GO:0031334,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0035825,GO:0036297,GO:0040019,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043392,GO:0044087,GO:0044089,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044798,GO:0045132,GO:0045165,GO:0045934,GO:0045995,GO:0046483,GO:0046982,GO:0046983,GO:0047485,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048609,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051094,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051241,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061062,GO:0061064,GO:0061695,GO:0061819,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070522,GO:0070911,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0098687,GO:0098813,GO:0104004,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901363,GO:1902494,GO:1903046,GO:1904353,GO:1904354,GO:1904356,GO:1904357,GO:1904505,GO:1904506,GO:1904742,GO:1904743,GO:1905764,GO:1905765,GO:1905767,GO:1905768,GO:1990234,GO:1990391,GO:2000026,GO:2001020,GO:2001021,GO:2001251
EggNOG free text desc.Excision repair cross-complementing rodent repair deficiency, complementation group 4
EggNOG OGs38DUG@33154,3B9BQ@33208,3CSD2@33213,488RA@7711,491JA@7742,49Y58@7898,COG1948@1,KOG0442@2759
COG Functional cat.L
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons1
Model size648
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.8917882-CDS-M-pyrifera_M_contig103292:4..6521622815537.8917882-CDS-M-pyrifera_M_contig103292:4..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103292 5..652 +
1692277454.408903-CDS-M-pyrifera_M_contig103292:4..6521692277454.408903-CDS-M-pyrifera_M_contig103292:4..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103292 5..652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103292.695.1prot_M-pyrifera_M_contig103292.695.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103292 5..652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103292.695.1

>prot_M-pyrifera_M_contig103292.695.1 ID=prot_M-pyrifera_M_contig103292.695.1|Name=mRNA_M-pyrifera_M_contig103292.695.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=216bp
GPLLPFQSKASDELHAHDCFLVMGEGMGLEEVICKFLLRLAWLEETILVL
GNAVDAWHLRWNMRLSGLPISQLPVHISATTPAAERRRAYSRGGIVVLSA
RIGIVDLLTRRFGKVGGVLVLYVERATESSQEAFCVRIVREQHPDAWVKG
VSARPSAITSGIHRAERLLRVLNLTQLSLWPRFRSEVSESLDSQAPEVVE
LAQPLSPRMQTLQRYI
back to top

mRNA from alignment at M-pyrifera_M_contig103292:5..652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103292.695.1 ID=mRNA_M-pyrifera_M_contig103292.695.1|Name=mRNA_M-pyrifera_M_contig103292.695.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig103292:5..652+ (Macrocystis pyrifera P11B4 male)
GGACCCCTGCTTCCTTTCCAGAGCAAGGCGAGTGATGAATTGCATGCACA TGATTGTTTTTTAGTGATGGGGGAGGGAATGGGGTTGGAAGAGGTGATTT GCAAGTTTTTATTGCGCCTTGCTTGGTTGGAAGAGACCATTCTCGTCCTT GGGAATGCTGTTGACGCTTGGCATCTTCGGTGGAATATGAGGTTGAGTGG ACTTCCCATTTCACAACTCCCAGTACACATTTCAGCCACTACACCAGCTG CTGAAAGGCGTCGAGCGTATTCTCGCGGTGGGATTGTAGTGTTAAGTGCA CGAATCGGGATTGTTGACTTGTTGACACGTCGATTTGGTAAAGTAGGGGG TGTGTTAGTGTTGTATGTGGAACGTGCCACAGAATCGTCGCAAGAAGCGT TTTGCGTCCGAATTGTGCGTGAGCAGCATCCCGATGCGTGGGTAAAAGGG GTCAGTGCGCGCCCTTCTGCGATTACAAGTGGGATTCATCGTGCAGAACG CTTACTTCGCGTGTTGAATTTGACGCAATTGAGTTTGTGGCCTCGATTTC GGAGTGAAGTGAGTGAATCGCTGGATTCTCAAGCACCTGAAGTTGTAGAA CTTGCACAGCCACTCTCTCCTCGAATGCAAACGTTGCAACGTTATATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103292:5..652+

>mRNA_M-pyrifera_M_contig103292.695.1 ID=mRNA_M-pyrifera_M_contig103292.695.1|Name=mRNA_M-pyrifera_M_contig103292.695.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1296bp|location=Sequence derived from alignment at M-pyrifera_M_contig103292:5..652+ (Macrocystis pyrifera P11B4 male)
GGACCCCTGCTTCCTTTCCAGAGCAAGGCGAGTGATGAATTGCATGCACA
TGATTGTTTTTTAGTGATGGGGGAGGGAATGGGGTTGGAAGAGGTGATTT
GCAAGTTTTTATTGCGCCTTGCTTGGTTGGAAGAGACCATTCTCGTCCTT
GGGAATGCTGTTGACGCTTGGCATCTTCGGTGGAATATGAGGTTGAGTGG
ACTTCCCATTTCACAACTCCCAGTACACATTTCAGCCACTACACCAGCTG
CTGAAAGGCGTCGAGCGTATTCTCGCGGTGGGATTGTAGTGTTAAGTGCA
CGAATCGGGATTGTTGACTTGTTGACACGTCGATTTGGTAAAGTAGGGGG
TGTGTTAGTGTTGTATGTGGAACGTGCCACAGAATCGTCGCAAGAAGCGT
TTTGCGTCCGAATTGTGCGTGAGCAGCATCCCGATGCGTGGGTAAAAGGG
GTCAGTGCGCGCCCTTCTGCGATTACAAGTGGGATTCATCGTGCAGAACG
CTTACTTCGCGTGTTGAATTTGACGCAATTGAGTTTGTGGCCTCGATTTC
GGAGTGAAGTGAGTGAATCGCTGGATTCTCAAGCACCTGAAGTTGTAGAA
CTTGCACAGCCACTCTCTCCTCGAATGCAAACGTTGCAACGTTATATCGG
ACCCCTGCTTCCTTTCCAGAGCAAGGCGAGTGATGAATTGCATGCACATG
ATTGTTTTTTAGTGATGGGGGAGGGAATGGGGTTGGAAGAGGTGATTTGC
AAGTTTTTATTGCGCCTTGCTTGGTTGGAAGAGACCATTCTCGTCCTTGG
GAATGCTGTTGACGCTTGGCATCTTCGGTGGAATATGAGGTTGAGTGGAC
TTCCCATTTCACAACTCCCAGTACACATTTCAGCCACTACACCAGCTGCT
GAAAGGCGTCGAGCGTATTCTCGCGGTGGGATTGTAGTGTTAAGTGCACG
AATCGGGATTGTTGACTTGTTGACACGTCGATTTGGTAAAGTAGGGGGTG
TGTTAGTGTTGTATGTGGAACGTGCCACAGAATCGTCGCAAGAAGCGTTT
TGCGTCCGAATTGTGCGTGAGCAGCATCCCGATGCGTGGGTAAAAGGGGT
CAGTGCGCGCCCTTCTGCGATTACAAGTGGGATTCATCGTGCAGAACGCT
TACTTCGCGTGTTGAATTTGACGCAATTGAGTTTGTGGCCTCGATTTCGG
AGTGAAGTGAGTGAATCGCTGGATTCTCAAGCACCTGAAGTTGTAGAACT
TGCACAGCCACTCTCTCCTCGAATGCAAACGTTGCAACGTTATATC
back to top