mRNA_M-pyrifera_M_contig103291.694.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A5A8CW99_CAFRO (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW99_CAFRO) HSP 1 Score: 97.8 bits (242), Expect = 1.420e-24 Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1 Query: 1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKK 273 M G +PV LL EA GHPV +ELK GELY+G L E++ ++N + TA+DGR+ +E+V LRG+QVRL LPD LQS+P+F ++ A K Sbjct: 1 MDGGVPVKLLHEAQGHPVTLELKNGELYRGVLVESDSAMNCQMRNVVFTARDGRRTRMENVFLRGTQVRLALLPDILQSAPMFKKLAEAAK 91
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A6G0XIN2_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIN2_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 9.000e-24 Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1 Query: 13 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKAA 291 +P++LL E GH + +ELK GE+Y+G L E+E+S+N L++ TLT++DG+ +E V +RGSQV+L LPD LQ SPLF +V+ KK EK A Sbjct: 7 VPLSLLHEGEGHSITLELKNGEIYRGHLVESEDSMNCQLKQVTLTSRDGQIHRLEQVYIRGSQVKLFILPDMLQKSPLFKKVQALKKPDEKKA 99
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A7S1C9Q8_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9Q8_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.050e-22 Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1 Query: 1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEK 285 MAG IPV LL E G+PV VEL+ GE+Y+G L E+++N+ L T A+DGR +EHV LRGSQ+R V LPD L+ +P+F +V+ AK + EK Sbjct: 1 MAG-IPVKLLHEGEGNPVTVELRNGEIYRGQLDAAEDNMNVQLSGVTFRARDGRISKLEHVYLRGSQIRFVVLPDMLKEAPIFKKVQSAKTKNEK 94
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: F6KSS7_PHYPO (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Physarum polycephalum TaxID=5791 RepID=F6KSS7_PHYPO) HSP 1 Score: 92.8 bits (229), Expect = 3.510e-22 Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 1 Query: 1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAK 270 M+ +P+ LL EA GH V +ELKTGE+Y+G L E+E+++N L TLTA+DGR ++EH +RGS++R + LPD L+++P+F RV +K Sbjct: 1 MSIGVPIKLLHEAEGHIVTIELKTGEVYRGQLIESEDNMNCQLGNITLTARDGRISNLEHAYVRGSKIRFLILPDMLKNAPMFKRVEASK 90
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A485LB96_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB96_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 4.560e-22 Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1 Query: 13 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKAA 291 +P++LL E GH + +ELK GE+Y+G L E+E+S+N L++ TLT +DG+ +E V +RGSQV+L LPD LQ SPLF +V+ KK EKA+ Sbjct: 7 VPLSLLHEGEGHQITLELKNGEVYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYVRGSQVKLFILPDMLQKSPLFKKVQALKKP-EKAS 98
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A8J8NI15_HALGN (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NI15_HALGN) HSP 1 Score: 91.3 bits (225), Expect = 6.970e-22 Identity = 43/96 (44.79%), Postives = 67/96 (69.79%), Query Frame = 1 Query: 1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKA 288 M+ +P+ LL EA H + ELK+GELY+G+L E E+++NM L+ +TA+DG+Q ++ V +RGSQVR V +PD L++SP+F R+ K+ + A Sbjct: 1 MSIGVPIKLLHEAENHVITCELKSGELYRGYLMEAEDTMNMRLDDVYVTARDGKQYHLDQVFVRGSQVRFVVIPDMLKNSPMFKRISNQAKKGKNA 96
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A2R5GRQ4_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRQ4_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.540e-21 Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1 Query: 10 SIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRV 258 S+P+ LL E IGHPV VE+K GE Y+G L E E ++N+ L AT TA++G++R +EH LRG+ V+ + LPDFL+ + +F V Sbjct: 8 SVPIRLLLEGIGHPVTVEMKNGESYRGQLVEAETTMNLQLSGATHTARNGQRRKLEHAYLRGTSVKFIVLPDFLREATIFKSV 90
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.320e-21 Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 1 Query: 13 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQ 276 +P+ +L E GH + VEL+ GE+Y+G L E E+++N LE T+TA+DGR +E V +RGSQV+L+ LP+ L+ SP F +V+ KK+ Sbjct: 8 VPIRILHEGEGHTISVELRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKKK 95
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A3R7A9P8_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A9P8_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 4.010e-21 Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1 Query: 13 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKK 273 +P++LL E GH + +ELK GE+Y+G L E+E+S+N L++ TLT +DG+ +E V +RGSQV+L LPD LQ SPLF +V+ KK Sbjct: 105 VPLSLLHEGEGHAITLELKNGEIYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYIRGSQVKLFILPDLLQKSPLFKKVQALKK 191
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A5K1HM69_9MAGN (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1HM69_9MAGN) HSP 1 Score: 89.4 bits (220), Expect = 5.400e-21 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1 Query: 16 PVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQ 276 PV LL EA H V VE+K+GE+Y+GFL + E+++N+ L+ T+ +KDGR VE V LRGSQ+R V +P +++P+F RVR KQ Sbjct: 11 PVKLLHEAKHHVVTVEMKSGEMYRGFLADAEDTMNVRLDDVTMFSKDGRSMPVEQVYLRGSQIRFVIVPSMFKNAPMFKRVRAQAKQ 97 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig103291.694.1 >prot_M-pyrifera_M_contig103291.694.1 ID=prot_M-pyrifera_M_contig103291.694.1|Name=mRNA_M-pyrifera_M_contig103291.694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAback to top mRNA from alignment at M-pyrifera_M_contig103291:185..475- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig103291.694.1 ID=mRNA_M-pyrifera_M_contig103291.694.1|Name=mRNA_M-pyrifera_M_contig103291.694.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig103291:185..475- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig103291:185..475- >mRNA_M-pyrifera_M_contig103291.694.1 ID=mRNA_M-pyrifera_M_contig103291.694.1|Name=mRNA_M-pyrifera_M_contig103291.694.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig103291:185..475- (Macrocystis pyrifera P11B4 male)back to top |