mRNA_M-pyrifera_M_contig100290.68.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100290.68.1
Unique NamemRNA_M-pyrifera_M_contig100290.68.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: UPI00125DC6DE (acyl carrier protein 1, mitochondrial-like n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00125DC6DE)

HSP 1 Score: 67.8 bits (164), Expect = 1.410e-12
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   67 PVSAAWTNGGY---ARRWMAGGADKPSPSEVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            PVS A T  G    + RWM+   D  S +EV  RV +VVK+F KVD +KVT + HF+ DLGLDSLD VE+VMA
Sbjct:   16 PVSQALTARGSILSSARWMSSHDDHLSKAEVVERVLDVVKSFPKVDPSKVTHEVHFQKDLGLDSLDNVEIVMA 88
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: A0A0K9P334_ZOSMR (Acyl carrier protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P334_ZOSMR)

HSP 1 Score: 66.2 bits (160), Expect = 7.250e-12
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  142 SEVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            SEV+ RV  VVKAFEK++ +KVT KAHF+NDLGLDSLD VE+VMA
Sbjct:   55 SEVSDRVISVVKAFEKIEPSKVTPKAHFQNDLGLDSLDSVEIVMA 99
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: A0A8K0AIA1_ANDGO (Mitochondrial Complex I (CI) NADH:ubiquinone oxidoreductase subunit SDAP/ACPM/NDUFAB1 n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0AIA1_ANDGO)

HSP 1 Score: 65.5 bits (158), Expect = 9.560e-12
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  145 EVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            EVT RV  VVK FEKVD AKV+  AHF NDLGLDSLDGVE+VMA
Sbjct:   38 EVTERVLSVVKKFEKVDPAKVSATAHFANDLGLDSLDGVEVVMA 81
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: UPI00125E9B2A (acyl carrier protein 1, mitochondrial-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E9B2A)

HSP 1 Score: 65.5 bits (158), Expect = 1.130e-11
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  106 RWMAGGADKPSPSEVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            RWM+   D  S  EV  RV +VVK F KVD +KVT   HF+ DLGLDSLD VE+VMA
Sbjct:   32 RWMSSHDDHLSKEEVAGRVLDVVKTFPKVDPSKVTPDVHFQKDLGLDSLDNVEIVMA 88
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: A0A835R5H6_VANPL (Acyl carrier protein n=3 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835R5H6_VANPL)

HSP 1 Score: 65.9 bits (159), Expect = 1.220e-11
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  142 SEVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            SEVT RV  VVK F+KVD +KVTEKAHF++DLGLDSLD VE+VMA
Sbjct:   49 SEVTDRVITVVKNFQKVDPSKVTEKAHFQDDLGLDSLDAVEVVMA 93
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: A0A7S2TBB6_PROMC (Acyl carrier protein (Fragment) n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TBB6_PROMC)

HSP 1 Score: 64.7 bits (156), Expect = 1.330e-11
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  145 EVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            EVT RV  VVKAFEKVD  KVT  +HF NDLGLDSLD VE+VMA
Sbjct:   54 EVTERVMNVVKAFEKVDEGKVTPTSHFANDLGLDSLDAVEVVMA 97
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: A0A565AZ34_9BRAS (Acyl carrier protein n=2 Tax=Brassicaceae TaxID=3700 RepID=A0A565AZ34_9BRAS)

HSP 1 Score: 65.5 bits (158), Expect = 1.350e-11
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  142 SEVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            SEVT RV  VVK F++VD AKVT KAHF+NDLGLDSLD VE+VMA
Sbjct:   52 SEVTDRVITVVKNFQRVDPAKVTPKAHFQNDLGLDSLDSVEVVMA 96
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: M5X145_PRUPE (Acyl carrier protein n=8 Tax=Rosaceae TaxID=3745 RepID=M5X145_PRUPE)

HSP 1 Score: 65.1 bits (157), Expect = 1.710e-11
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  106 RWMAGGADKPSPSEVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            RWM+   D  + SEVT RV  VVK+F KVD + VT   HF+ DLGLDSLD VE+VMA
Sbjct:   35 RWMSSHDDHLTKSEVTERVLSVVKSFPKVDPSTVTSDVHFQKDLGLDSLDNVEIVMA 91
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: A0A7N0TAU7_KALFE (Acyl carrier protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TAU7_KALFE)

HSP 1 Score: 65.1 bits (157), Expect = 1.750e-11
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  142 SEVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            SEVT RV +VVK F+KVD +KVT +AHF+NDLGLDSLD VE+VMA
Sbjct:   48 SEVTDRVIKVVKNFQKVDPSKVTPEAHFQNDLGLDSLDAVEIVMA 92
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BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Match: A0A078JEW7_BRANA (Acyl carrier protein n=11 Tax=Brassicaceae TaxID=3700 RepID=A0A078JEW7_BRANA)

HSP 1 Score: 65.1 bits (157), Expect = 1.950e-11
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  142 SEVTARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA 276
            SEVT RV  VVK F+KV+ +KVT KAHF+NDLGLDSLD VE+VMA
Sbjct:   53 SEVTDRVVSVVKTFQKVEPSKVTSKAHFQNDLGLDSLDTVEVVMA 97
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100290.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00125DC6DE1.410e-1254.79acyl carrier protein 1, mitochondrial-like n=3 Tax... [more]
A0A0K9P334_ZOSMR7.250e-1273.33Acyl carrier protein n=1 Tax=Zostera marina TaxID=... [more]
A0A8K0AIA1_ANDGO9.560e-1277.27Mitochondrial Complex I (CI) NADH:ubiquinone oxido... [more]
UPI00125E9B2A1.130e-1159.65acyl carrier protein 1, mitochondrial-like n=2 Tax... [more]
A0A835R5H6_VANPL1.220e-1175.56Acyl carrier protein n=3 Tax=Vanilla planifolia Ta... [more]
A0A7S2TBB6_PROMC1.330e-1175.00Acyl carrier protein (Fragment) n=1 Tax=Prorocentr... [more]
A0A565AZ34_9BRAS1.350e-1175.56Acyl carrier protein n=2 Tax=Brassicaceae TaxID=37... [more]
M5X145_PRUPE1.710e-1159.65Acyl carrier protein n=8 Tax=Rosaceae TaxID=3745 R... [more]
A0A7N0TAU7_KALFE1.750e-1173.33Acyl carrier protein n=1 Tax=Kalanchoe fedtschenko... [more]
A0A078JEW7_BRANA1.950e-1173.33Acyl carrier protein n=11 Tax=Brassicaceae TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100290contigM-pyrifera_M_contig100290:3..278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.6
Seed ortholog evalue6.8e-09
Seed eggNOG ortholog102107.XP_008232301.1
KEGG koko:K03955
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categorymitochondrion
GOsGO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0031974,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0070013,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509
EggNOG free text desc.Carrier of the growing fatty acid chain in fatty acid biosynthesis
EggNOG OGs37VEI@33090,3GJB6@35493,4JQAN@91835,COG0236@1,KOG1748@2759
COG Functional cat.CIQ
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.5097258-CDS-M-pyrifera_M_contig100290:2..2781622815498.5097258-CDS-M-pyrifera_M_contig100290:2..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100290 3..278 -
1692277439.0723622-CDS-M-pyrifera_M_contig100290:2..2781692277439.0723622-CDS-M-pyrifera_M_contig100290:2..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100290 3..278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100290.68.1prot_M-pyrifera_M_contig100290.68.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100290 3..278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100290.68.1

>prot_M-pyrifera_M_contig100290.68.1 ID=prot_M-pyrifera_M_contig100290.68.1|Name=mRNA_M-pyrifera_M_contig100290.68.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MSWVASGFLVRRTGYLVARQAAPVSAAWTNGGYARRWMAGGADKPSPSEV
TARVQEVVKAFEKVDAAKVTEKAHFKNDLGLDSLDGVELVMA
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mRNA from alignment at M-pyrifera_M_contig100290:3..278-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100290.68.1 ID=mRNA_M-pyrifera_M_contig100290.68.1|Name=mRNA_M-pyrifera_M_contig100290.68.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig100290:3..278- (Macrocystis pyrifera P11B4 male)
ATGTCGTGGGTTGCATCTGGCTTTTTGGTGCGCAGGACCGGTTATTTGGT
GGCTCGCCAGGCTGCTCCGGTGAGCGCTGCCTGGACGAACGGTGGCTATG
CCAGGAGGTGGATGGCCGGCGGTGCCGACAAGCCTAGCCCCTCTGAGGTT
ACTGCCCGCGTGCAGGAGGTCGTGAAGGCCTTCGAGAAGGTGGACGCAGC
CAAGGTGACGGAGAAGGCCCACTTCAAGAACGACCTCGGCCTCGACAGCC
TGGACGGCGTCGAGCTGGTGATGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100290:3..278-

>mRNA_M-pyrifera_M_contig100290.68.1 ID=mRNA_M-pyrifera_M_contig100290.68.1|Name=mRNA_M-pyrifera_M_contig100290.68.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig100290:3..278- (Macrocystis pyrifera P11B4 male)
ATGTCGTGGGTTGCATCTGGCTTTTTGGTGCGCAGGACCGGTTATTTGGT
GGCTCGCCAGGCTGCTCCGGTGAGCGCTGCCTGGACGAACGGTGGCTATG
CCAGGAGGTGGATGGCCGGCGGTGCCGACAAGCCTAGCCCCTCTGAGGTT
ACTGCCCGCGTGCAGGAGGTCGTGAAGGCCTTCGAGAAGGTGGACGCAGC
CAAGGTGACGGAGAAGGCCCACTTCAAGAACGACCTCGGCCTCGACAGCC
TGGACGGCGTCGAGCTGGTGATGGCCATGTCGTGGGTTGCATCTGGCTTT
TTGGTGCGCAGGACCGGTTATTTGGTGGCTCGCCAGGCTGCTCCGGTGAG
CGCTGCCTGGACGAACGGTGGCTATGCCAGGAGGTGGATGGCCGGCGGTG
CCGACAAGCCTAGCCCCTCTGAGGTTACTGCCCGCGTGCAGGAGGTCGTG
AAGGCCTTCGAGAAGGTGGACGCAGCCAAGGTGACGGAGAAGGCCCACTT
CAAGAACGACCTCGGCCTCGACAGCCTGGACGGCGTCGAGCTGGTGATGG
CC
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