mRNA_M-pyrifera_M_contig103175.671.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103175.671.1
Unique NamemRNA_M-pyrifera_M_contig103175.671.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: A0A835YML9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.550e-9
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   16 FVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGME 174
            F+ + L++PR +G  +SL L   V+ G KLQP ESH+ Y+LQ  +DHGLAG E
Sbjct:   19 FLRVELYNPRAVGEVASL-LQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYE 70          
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: A0A139AZL3_GONPJ (Uncharacterized protein (Fragment) n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AZL3_GONPJ)

HSP 1 Score: 57.4 bits (137), Expect = 1.650e-7
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGMELCKIVNPRWRT 207
            SS  PF+ +   DP     A+ L  +G ++ G  LQPHESH+ Y+LQF++DH L GM+   + N  +RT
Sbjct:  150 SSYRPFLKLSFIDPFACSRAADLLASGAIM-GRPLQPHESHIPYLLQFLLDHNLFGMDFIHLRNVLFRT 217          
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: E0VD89_PEDHC (DNA polymerase zeta catalytic subunit n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VD89_PEDHC)

HSP 1 Score: 56.2 bits (134), Expect = 4.380e-7
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGMELCKIVNPRWR 204
            +S   F  I L++P  I  AS L L G ++ G KLQPHESH+ Y LQFMMD+ + GM        ++R
Sbjct:  113 ASHHQFFKIFLYNPFYIKKASDLLLKGAIL-GQKLQPHESHIPYTLQFMMDYNIYGMSFVNFSKVKYR 179          
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: A0A6J1KIG8_CUCMA (DNA polymerase zeta catalytic subunit n=2 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KIG8_CUCMA)

HSP 1 Score: 55.8 bits (133), Expect = 5.980e-7
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGMELCKIVNPRWRTTFP 216
            SS   F+ I L+ P+ I  A++L LNG V+  + LQP+ESH+ +VLQF++D+ L GM L  ++  ++R   P
Sbjct:  129 SSEELFLKIYLYHPQDITRAANLLLNGAVLEKI-LQPYESHIPFVLQFLVDYNLYGMGLLHLMKLKFRHPVP 199          
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: A0A6P8EKA9_PUNGR (DNA polymerase zeta catalytic subunit n=2 Tax=Punica granatum TaxID=22663 RepID=A0A6P8EKA9_PUNGR)

HSP 1 Score: 55.8 bits (133), Expect = 5.990e-7
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGMELCKIVNPRWRTTFPPSIAASL 237
            +S   FV I L++P  I  A+ L L G V     LQPHESH+ Y+LQF++D+ L GM    +   ++R   P S ++ L
Sbjct:  134 ASEELFVKIYLYNPHDIARAAKLLLAGAVFDR-SLQPHESHIPYLLQFLVDYNLYGMGHLHVTKMKFRNPIPVSFSSKL 211          
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: A0A1S3BYN1_CUCME (DNA polymerase zeta catalytic subunit-like isoform X1 n=2 Tax=Cucumis melo TaxID=3656 RepID=A0A1S3BYN1_CUCME)

HSP 1 Score: 55.5 bits (132), Expect = 7.800e-7
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGMELCKIVNPRWRTTFP 216
            SS   F+ I L+ P+ I  A++L LNG V+    LQP+ESH+ +VLQF++D+ L GM L  +V  ++R   P
Sbjct:  129 SSEELFMKIYLYYPQDITRAANLLLNGAVLEK-SLQPYESHIPFVLQFLVDYNLYGMGLLHLVKLKFRLPVP 199          
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: A0A166GNC6_DAUCS (DNA polymerase n=4 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166GNC6_DAUCS)

HSP 1 Score: 55.5 bits (132), Expect = 8.120e-7
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGMELCKIVNPRWRTTFP 216
            SS   FV I L+ P+ +  A++L + G ++  V LQPHESH+ ++LQF++DH L GM    +   ++RT  P
Sbjct:  128 SSEEFFVKIFLYYPQDVSRAANLLVGGAILDKV-LQPHESHIPFLLQFLIDHNLYGMGHLHVSKMKFRTPVP 198          
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: A0A5D3CRJ8_CUCME (DNA polymerase n=2 Tax=Cucumis TaxID=3655 RepID=A0A5D3CRJ8_CUCME)

HSP 1 Score: 55.5 bits (132), Expect = 8.120e-7
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGMELCKIVNPRWRTTFP 216
            SS   F+ I L+ P+ I  A++L LNG V+    LQP+ESH+ +VLQF++D+ L GM L  +V  ++R   P
Sbjct:  129 SSEELFMKIYLYYPQDITRAANLLLNGAVLEK-SLQPYESHIPFVLQFLVDYNLYGMGLLHLVKLKFRLPVP 199          
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: A0A6J1G355_CUCMO (DNA polymerase zeta catalytic subunit n=1 Tax=Cucurbita moschata TaxID=3662 RepID=A0A6J1G355_CUCMO)

HSP 1 Score: 55.5 bits (132), Expect = 8.180e-7
Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGMELCKIVNPRWRTTFP 216
            SS   F+ I L+ P+ I  A++L LNG ++  + LQP+ESH+ +VLQF++D+ L GM L  ++  ++R   P
Sbjct:  129 SSEELFMKIYLYHPQDITRAANLLLNGAILEKI-LQPYESHIPFVLQFLVDYNLYGMGLLHLMKLKFRHPVP 199          
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Match: A0A5A7U379_CUCME (DNA polymerase zeta catalytic subunit n=3 Tax=Cucumis TaxID=3655 RepID=A0A5A7U379_CUCME)

HSP 1 Score: 55.5 bits (132), Expect = 8.180e-7
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMMDHGLAGMELCKIVNPRWRTTFP 216
            SS   F+ I L+ P+ I  A++L LNG V+    LQP+ESH+ +VLQF++D+ L GM L  +V  ++R   P
Sbjct:  129 SSEELFMKIYLYYPQDITRAANLLLNGAVLEK-SLQPYESHIPFVLQFLVDYNLYGMGLLHLVKLKFRLPVP 199          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103175.671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YML9_9STRA9.550e-950.94Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A139AZL3_GONPJ1.650e-742.03Uncharacterized protein (Fragment) n=1 Tax=Gonapod... [more]
E0VD89_PEDHC4.380e-744.12DNA polymerase zeta catalytic subunit n=1 Tax=Pedi... [more]
A0A6J1KIG8_CUCMA5.980e-741.67DNA polymerase zeta catalytic subunit n=2 Tax=Cucu... [more]
A0A6P8EKA9_PUNGR5.990e-739.24DNA polymerase zeta catalytic subunit n=2 Tax=Puni... [more]
A0A1S3BYN1_CUCME7.800e-743.06DNA polymerase zeta catalytic subunit-like isoform... [more]
A0A166GNC6_DAUCS8.120e-740.28DNA polymerase n=4 Tax=Daucus carota subsp. sativu... [more]
A0A5D3CRJ8_CUCME8.120e-743.06DNA polymerase n=2 Tax=Cucumis TaxID=3655 RepID=A0... [more]
A0A6J1G355_CUCMO8.180e-740.28DNA polymerase zeta catalytic subunit n=1 Tax=Cucu... [more]
A0A5A7U379_CUCME8.180e-743.06DNA polymerase zeta catalytic subunit n=3 Tax=Cucu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103175contigM-pyrifera_M_contig103175:365..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.555655-CDS-M-pyrifera_M_contig103175:364..6491622815536.555655-CDS-M-pyrifera_M_contig103175:364..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103175 365..649 -
1692277453.7916965-CDS-M-pyrifera_M_contig103175:364..6491692277453.7916965-CDS-M-pyrifera_M_contig103175:364..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103175 365..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103175.671.1prot_M-pyrifera_M_contig103175.671.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103175 365..649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103175.671.1

>prot_M-pyrifera_M_contig103175.671.1 ID=prot_M-pyrifera_M_contig103175.671.1|Name=mRNA_M-pyrifera_M_contig103175.671.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
SSSSPFVCIRLFDPRRIGVASSLCLNGNVIPGVKLQPHESHVGYVLQFMM
DHGLAGMELCKIVNPRWRTTFPPSIAASLPSTLLPYPTSPSPSSL
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mRNA from alignment at M-pyrifera_M_contig103175:365..649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103175.671.1 ID=mRNA_M-pyrifera_M_contig103175.671.1|Name=mRNA_M-pyrifera_M_contig103175.671.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig103175:365..649- (Macrocystis pyrifera P11B4 male)
TCATCCTCATCCCCTTTTGTTTGTATACGTTTGTTTGACCCAAGGAGGAT TGGAGTGGCTTCTTCCTTGTGTTTGAATGGGAATGTGATTCCTGGGGTAA AGTTGCAACCACATGAGAGTCATGTGGGATATGTACTACAGTTCATGATG GATCATGGACTAGCAGGGATGGAATTGTGCAAAATCGTGAACCCAAGATG GAGAACAACGTTTCCACCTTCCATCGCCGCTTCCCTCCCTTCCACACTCC TCCCATACCCAACATCCCCTTCTCCTTCCTCTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103175:365..649-

>mRNA_M-pyrifera_M_contig103175.671.1 ID=mRNA_M-pyrifera_M_contig103175.671.1|Name=mRNA_M-pyrifera_M_contig103175.671.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig103175:365..649- (Macrocystis pyrifera P11B4 male)
TCATCCTCATCCCCTTTTGTTTGTATACGTTTGTTTGACCCAAGGAGGAT
TGGAGTGGCTTCTTCCTTGTGTTTGAATGGGAATGTGATTCCTGGGGTAA
AGTTGCAACCACATGAGAGTCATGTGGGATATGTACTACAGTTCATGATG
GATCATGGACTAGCAGGGATGGAATTGTGCAAAATCGTGAACCCAAGATG
GAGAACAACGTTTCCACCTTCCATCGCCGCTTCCCTCCCTTCCACACTCC
TCCCATACCCAACATCCCCTTCTCCTTCCTCTCTCTCATCCTCATCCCCT
TTTGTTTGTATACGTTTGTTTGACCCAAGGAGGATTGGAGTGGCTTCTTC
CTTGTGTTTGAATGGGAATGTGATTCCTGGGGTAAAGTTGCAACCACATG
AGAGTCATGTGGGATATGTACTACAGTTCATGATGGATCATGGACTAGCA
GGGATGGAATTGTGCAAAATCGTGAACCCAAGATGGAGAACAACGTTTCC
ACCTTCCATCGCCGCTTCCCTCCCTTCCACACTCCTCCCATACCCAACAT
CCCCTTCTCCTTCCTCTCTC
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