mRNA_M-pyrifera_M_contig10317.670.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10317.670.1
Unique NamemRNA_M-pyrifera_M_contig10317.670.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.780e-19
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGLEEAHSGVF+ELAVLY+KY+PEKLMEHIKIFWSRCNVTKV
Sbjct: 1292 GLGLEEAHSGVFSELAVLYSKYSPEKLMEHIKIFWSRCNVTKV 1334
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BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: A0A482RYD4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYD4_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 9.220e-16
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGL+ AHSG+FTEL +LY+KY PEKLMEHIKIFWSR NVTK+
Sbjct:  306 GLGLDHAHSGIFTELGILYSKYLPEKLMEHIKIFWSRMNVTKL 348
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BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: A0A8J2SD23_9STRA (Clathrin heavy chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SD23_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.710e-15
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGL++AHSGVFTEL VLY+KY PEKLMEHIKIFWSR N  KV
Sbjct: 1337 GLGLDQAHSGVFTELGVLYSKYVPEKLMEHIKIFWSRMNAPKV 1379
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BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: A0A0F7SQW9_PHARH (Clathrin heavy chain n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SQW9_PHARH)

HSP 1 Score: 77.0 bits (188), Expect = 2.340e-15
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGLE AH G+FTEL++LY+KY PEKLMEH+K+FWSRCN+ KV
Sbjct: 1306 GLGLERAHMGMFTELSILYSKYRPEKLMEHLKLFWSRCNLPKV 1348
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BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.190e-15
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGLEEAHSG+FTELAVLY+KY+P+KLM HIK+FW+R N +KV
Sbjct: 1334 GLGLEEAHSGIFTELAVLYSKYSPDKLMAHIKLFWNRMNTSKV 1376
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BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: A0A2P7YY00_9ASCO (Clathrin heavy chain n=9 Tax=Metschnikowiaceae incertae sedis TaxID=2937349 RepID=A0A2P7YY00_9ASCO)

HSP 1 Score: 75.5 bits (184), Expect = 8.140e-15
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGLE AH G+FTELA+LYTKY PEK+MEH+K+FWSR N+ KV
Sbjct: 1306 GLGLERAHMGMFTELAILYTKYKPEKVMEHLKLFWSRINIPKV 1348
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BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: UPI001C803B3F (Clathrin heavy chain n=1 Tax=Scheffersomyces spartinae TaxID=45513 RepID=UPI001C803B3F)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-14
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGLE AH G+FTELAVLY+KY+PEK+MEH+K+FWSR N+ KV
Sbjct: 1554 GLGLERAHMGMFTELAVLYSKYSPEKVMEHLKLFWSRINIPKV 1596
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BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: A0A1E4TU33_PACTA (Clathrin heavy chain n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TU33_PACTA)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGLE AH G+FTELA+LYTKY PEK MEH+K+FWSR N+ KV
Sbjct: 1305 GLGLERAHMGMFTELAILYTKYAPEKTMEHLKLFWSRINIPKV 1347
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BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: W6MPL8_9ASCO (Clathrin heavy chain n=1 Tax=Kuraishia capsulata CBS 1993 TaxID=1382522 RepID=W6MPL8_9ASCO)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGLE AH G+FTELA+LYTKY PEK MEH+K+FWSR N+ KV
Sbjct: 1299 GLGLERAHMGMFTELAILYTKYAPEKTMEHLKLFWSRLNIPKV 1341
[Close]
BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Match: G8B5B3_CANPC (Clathrin heavy chain n=3 Tax=Candida TaxID=1535326 RepID=G8B5B3_CANPC)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-14
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV 129
            GLGLE AH G+FTELA+LY+KY+PEK+MEH+K+FWSR N+ KV
Sbjct: 1306 GLGLERAHKGMFTELAILYSKYSPEKVMEHLKLFWSRINIPKV 1348
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10317.670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD1_ECTSI3.780e-1993.02Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A482RYD4_9ARCH9.220e-1679.07Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2SD23_9STRA1.710e-1581.40Clathrin heavy chain n=1 Tax=Pelagomonas calceolat... [more]
A0A0F7SQW9_PHARH2.340e-1574.42Clathrin heavy chain n=1 Tax=Phaffia rhodozyma Tax... [more]
A0A835YZH1_9STRA3.190e-1576.74Clathrin heavy chain n=1 Tax=Tribonema minus TaxID... [more]
A0A2P7YY00_9ASCO8.140e-1574.42Clathrin heavy chain n=9 Tax=Metschnikowiaceae inc... [more]
UPI001C803B3F1.110e-1474.42Clathrin heavy chain n=1 Tax=Scheffersomyces spart... [more]
A0A1E4TU33_PACTA1.110e-1474.42Clathrin heavy chain n=1 Tax=Pachysolen tannophilu... [more]
W6MPL8_9ASCO1.110e-1474.42Clathrin heavy chain n=1 Tax=Kuraishia capsulata C... [more]
G8B5B3_CANPC1.110e-1472.09Clathrin heavy chain n=3 Tax=Candida TaxID=1535326... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10317contigM-pyrifera_M_contig10317:10351..10479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue7.8e-16
Seed eggNOG ortholog2880.D7FWD1
Preferred nameCLTC
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000041,GO:0000139,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000323,GO:0000578,GO:0000910,GO:0000912,GO:0000915,GO:0001505,GO:0001654,GO:0001745,GO:0002020,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005905,GO:0005911,GO:0005938,GO:0006109,GO:0006403,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006907,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007030,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007346,GO:0007349,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007424,GO:0007568,GO:0007591,GO:0007594,GO:0008022,GO:0008092,GO:0008103,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008298,GO:0008340,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009898,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010118,GO:0010256,GO:0010259,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010623,GO:0010646,GO:0010647,GO:0010827,GO:0010828,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016055,GO:0016079,GO:0016192,GO:0016197,GO:0016324,GO:0016325,GO:0016482,GO:0017156,GO:0019094,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022608,GO:0022609,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030054,GO:0030100,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030154,GO:0030163,GO:0030198,GO:0030276,GO:0030315,GO:0030424,GO:0030435,GO:0030479,GO:0030506,GO:0030587,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030951,GO:0030952,GO:0031032,GO:0031072,GO:0031090,GO:0031152,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031523,GO:0031623,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0031984,GO:0032051,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032881,GO:0032885,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033218,GO:0033227,GO:0033267,GO:0033363,GO:0033554,GO:0033572,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0035002,GO:0035150,GO:0035151,GO:0035152,GO:0035159,GO:0035282,GO:0035567,GO:0036019,GO:0036020,GO:0040008,GO:0042044,GO:0042045,GO:0042147,GO:0042277,GO:0042303,GO:0042383,GO:0042594,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043062,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043679,GO:0043933,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044430,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045055,GO:0045056,GO:0045176,GO:0045177,GO:0045184,GO:0045202,GO:0045334,GO:0045451,GO:0045747,GO:0045807,GO:0045912,GO:0046324,GO:0046326,GO:0046666,GO:0046667,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048259,GO:0048260,GO:0048268,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048475,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051301,GO:0051493,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060071,GO:0060236,GO:0060255,GO:0060341,GO:0060541,GO:0060627,GO:0060810,GO:0060811,GO:0061024,GO:0061640,GO:0061645,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070507,GO:0070633,GO:0070727,GO:0070925,GO:0071439,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0072583,GO:0072686,GO:0080090,GO:0090066,GO:0090175,GO:0090224,GO:0090307,GO:0090596,GO:0090702,GO:0097006,GO:0097159,GO:0097443,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098852,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099120,GO:0099503,GO:0099504,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:0140014,GO:0150034,GO:0198738,GO:1900125,GO:1900126,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902850,GO:1903047,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990381,GO:1990498,GO:1990763,GO:2000026,GO:2000027,GO:2000369,GO:2000370
EggNOG free text desc.clathrin light chain binding
EggNOG OGsKOG0985@1,KOG0985@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.521996-CDS-M-pyrifera_M_contig10317:10350..104791622815536.521996-CDS-M-pyrifera_M_contig10317:10350..10479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10317 10351..10479 +
1692277453.7804015-CDS-M-pyrifera_M_contig10317:10350..104791692277453.7804015-CDS-M-pyrifera_M_contig10317:10350..10479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10317 10351..10479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10317.670.1prot_M-pyrifera_M_contig10317.670.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10317 10351..10479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10317.670.1

>prot_M-pyrifera_M_contig10317.670.1 ID=prot_M-pyrifera_M_contig10317.670.1|Name=mRNA_M-pyrifera_M_contig10317.670.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
GLGLEEAHSGVFTELAVLYTKYTPEKLMEHIKIFWSRCNVTKV
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mRNA from alignment at M-pyrifera_M_contig10317:10351..10479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10317.670.1 ID=mRNA_M-pyrifera_M_contig10317.670.1|Name=mRNA_M-pyrifera_M_contig10317.670.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig10317:10351..10479+ (Macrocystis pyrifera P11B4 male)
GGCCTGGGATTGGAAGAGGCCCACTCCGGAGTGTTCACGGAGCTGGCGGT
GCTCTATACCAAGTACACCCCGGAGAAGCTCATGGAGCACATCAAGATCT
TCTGGTCGCGATGCAACGTCACCAAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10317:10351..10479+

>mRNA_M-pyrifera_M_contig10317.670.1 ID=mRNA_M-pyrifera_M_contig10317.670.1|Name=mRNA_M-pyrifera_M_contig10317.670.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig10317:10351..10479+ (Macrocystis pyrifera P11B4 male)
GGCCTGGGATTGGAAGAGGCCCACTCCGGAGTGTTCACGGAGCTGGCGGT
GCTCTATACCAAGTACACCCCGGAGAAGCTCATGGAGCACATCAAGATCT
TCTGGTCGCGATGCAACGTCACCAAGGTAGGCCTGGGATTGGAAGAGGCC
CACTCCGGAGTGTTCACGGAGCTGGCGGTGCTCTATACCAAGTACACCCC
GGAGAAGCTCATGGAGCACATCAAGATCTTCTGGTCGCGATGCAACGTCA
CCAAGGTA
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