mRNA_M-pyrifera_M_contig103165.667.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103165.667.1
Unique NamemRNA_M-pyrifera_M_contig103165.667.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: A0A847Y7A6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Thermogutta sp. TaxID=1962930 RepID=A0A847Y7A6_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 9.540e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   10 QPRNPRRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYG 264
            +PR  RRGV+LL+V+ALLA+   V + FV+V+G   R A    L  +  +  E  L   + QV+RGS+N TS +  HSL+ED+YG
Sbjct:    5 KPRAQRRGVVLLLVLALLAVFGVVVLAFVVVTGFARRGAETAKLHQVQYDPPEKTLYQVLMQVVRGSNNPTSAVWCHSLLEDIYG 89          
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: A0A7X8UY16_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7X8UY16_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 7.840e-11
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    1 MLFQPRNPRRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYGID 270
            M +     RRGVLLLV++ALLA+   V +TFV+V+     +A      D  T+    LL+ A+ QVLRGS N  S IG HSL+EDVY  D
Sbjct:    1 MRYAKHKSRRGVLLLVILALLAMFGMVAVTFVVVASQARIAAEAHQRMDETTDPPRKLLNAALMQVLRGSTNDASAIGPHSLLEDVYAFD 90          
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: A0A7C3E6Q4_9BACT (SBP_bac_5 domain-containing protein n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7C3E6Q4_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.680e-9
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   16 RNPRRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYG 264
            R+ RRGVLLLV++ALLA+   V + FV++SG  MR+A      D  ++   A LD A+ +V+RGS+N  S I  H+L+ED+YG
Sbjct:   29 RHRRRGVLLLVILALLAMFGLVAVAFVVLSGQAMRAATAMQRIDEYSDRPRADLDRALMEVVRGSNNPMSAIQWHNLLEDMYG 111          
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: A0A7V4HUK5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HUK5_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 6.170e-9
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   16 RNPRRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYG 264
            R  RRGVLLL+V+ALLA+   + ++FV++SG   R A   +      +S   L+  A+ QVLRG+++  S IGAHSL+ED+YG
Sbjct:    8 RVSRRGVLLLLVLALLAMFGLLAISFVVISGQAKRGAEAVSKRLRLEDSPRELMGEAIAQVLRGTNSSVSGIGAHSLLEDLYG 90          
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: E8R143_ISOPI (Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) TaxID=575540 RepID=E8R143_ISOPI)

HSP 1 Score: 60.5 bits (145), Expect = 1.580e-8
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   25 RRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYGIDARLNGM 288
            RRGV+L++V+ALL+LMA + +TF  +SG   RS+R  A + L+  + + L+D A++Q++  + N  S I  HS+  D+YG DA+ NG 
Sbjct:   27 RRGVVLILVLALLSLMALIGVTFATISGQYQRSSRSFAQSLLNPPAAD-LVDYALNQLINDTGNPLSAIRGHSIKRDMYGNDAQYNGF 113          
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: A0A7V3N9V5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3N9V5_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.530e-7
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   25 RRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYG 264
            RRGVL+L+V+ LLA+   V + FV+++G   + A      D    + E  L+    +VLRGS+N TS IG HSL+ED+YG
Sbjct:   10 RRGVLMLLVLGLLAMFGMVAIAFVIITGQFRQIAETNRKIDEYRRAPEEELEQVALEVLRGSENETSAIGHHSLLEDLYG 89          
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: A0A518K2X6_9BACT (Uncharacterized protein n=1 Tax=Botrimarina mediterranea TaxID=2528022 RepID=A0A518K2X6_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 8.110e-6
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   16 RNPRRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYGID 270
            R  RRGVLLLVV+++L L   +  TF+L SG    +++    A   T     LL+ A+ Q++R ++N +S I  HSL+ D+YG+D
Sbjct:   11 RAERRGVLLLVVLSMLVLFLLLGTTFLLTSGQYRTASKIVEKAHRTTFQPADLLERALMQLVRDTNNSSSVIRYHSLLRDMYGVD 95          
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: A0A517TR00_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium MalM25 TaxID=2527998 RepID=A0A517TR00_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 8.120e-6
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   25 RRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYGID 270
            RRGVLLLVV+++L L   V  TF++ SG     ++    A+  T     LL+ A+ Q++R ++N +S I  HSL+ D+YG+D
Sbjct:   23 RRGVLLLVVLSMLVLFLLVGTTFLITSGQYRTQSKVVEKANRSTFQPADLLERALMQLVRDTNNPSSVIRHHSLLRDLYGVD 104          
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: A0A5C5VHD5_9BACT (Uncharacterized protein n=1 Tax=Posidoniimonas corsicana TaxID=1938618 RepID=A0A5C5VHD5_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.510e-5
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   25 RRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYGID 270
            RRGVLLL+V+++L +   V   FVL       +AR  A A++       LLD A+ QVLR +++  S I  HSL+ D YG D
Sbjct:   24 RRGVLLLIVLSILVMFMLVGTAFVLTGSRVSDAARAGAKANVAAPQQADLLDRALRQVLRDTNDRNSAIRYHSLLRDAYGTD 105          
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Match: A0A5C5W7X9_9BACT (Uncharacterized protein n=1 Tax=Botrimarina hoheduenensis TaxID=2528000 RepID=A0A5C5W7X9_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 2.070e-5
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   25 RRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADLDTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYGID 270
            RRGV++LVV+++L L   V  TF++ SG    ++R    A+  T     LL+ A+ Q+LR ++N  S    HSL+ D+YG D
Sbjct:   36 RRGVIMLVVLSMLVLFMLVGTTFLITSGQYRTASRAIEKANRSTQQPADLLERALMQLLRDTNNRYSTARYHSLLRDLYGSD 117          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103165.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A847Y7A6_9BACT9.540e-1244.71Uncharacterized protein (Fragment) n=1 Tax=Thermog... [more]
A0A7X8UY16_9BACT7.840e-1146.67Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7C3E6Q4_9BACT1.680e-946.99SBP_bac_5 domain-containing protein n=1 Tax=Bryoba... [more]
A0A7V4HUK5_9BACT6.170e-945.78Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
E8R143_ISOPI1.580e-842.05Uncharacterized protein n=1 Tax=Isosphaera pallida... [more]
A0A7V3N9V5_9BACT3.530e-743.75Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A518K2X6_9BACT8.110e-640.00Uncharacterized protein n=1 Tax=Botrimarina medite... [more]
A0A517TR00_9BACT8.120e-640.24Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C5VHD5_9BACT1.510e-541.46Uncharacterized protein n=1 Tax=Posidoniimonas cor... [more]
A0A5C5W7X9_9BACT2.070e-539.02Uncharacterized protein n=1 Tax=Botrimarina hohedu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103165contigM-pyrifera_M_contig103165:94..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.220801-CDS-M-pyrifera_M_contig103165:93..3871622815536.220801-CDS-M-pyrifera_M_contig103165:93..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103165 94..387 -
1692277453.6683543-CDS-M-pyrifera_M_contig103165:93..3871692277453.6683543-CDS-M-pyrifera_M_contig103165:93..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103165 94..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103165.667.1prot_M-pyrifera_M_contig103165.667.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103165 94..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103165.667.1

>prot_M-pyrifera_M_contig103165.667.1 ID=prot_M-pyrifera_M_contig103165.667.1|Name=mRNA_M-pyrifera_M_contig103165.667.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MLFQPRNPRRGVLLLVVMALLALMATVTMTFVLVSGVQMRSARGTALADL
DTNSHEALLDGAMDQVLRGSDNYTSPIGAHSLIEDVYGIDARLNGMGG
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mRNA from alignment at M-pyrifera_M_contig103165:94..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103165.667.1 ID=mRNA_M-pyrifera_M_contig103165.667.1|Name=mRNA_M-pyrifera_M_contig103165.667.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig103165:94..387- (Macrocystis pyrifera P11B4 male)
ATGTTATTTCAACCGCGTAACCCCCGCCGAGGCGTACTGCTGCTGGTGGT GATGGCCCTGTTGGCTTTGATGGCCACCGTGACGATGACCTTCGTCCTGG TGAGCGGCGTCCAAATGCGCTCTGCCCGCGGCACCGCACTAGCCGACCTG GACACCAACTCCCACGAAGCACTCCTCGACGGCGCGATGGATCAAGTGTT GCGCGGCTCCGACAATTACACTTCGCCGATCGGTGCACATAGCTTGATCG AAGACGTCTACGGAATTGATGCACGTTTGAACGGAATGGGTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103165:94..387-

>mRNA_M-pyrifera_M_contig103165.667.1 ID=mRNA_M-pyrifera_M_contig103165.667.1|Name=mRNA_M-pyrifera_M_contig103165.667.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig103165:94..387- (Macrocystis pyrifera P11B4 male)
ATGTTATTTCAACCGCGTAACCCCCGCCGAGGCGTACTGCTGCTGGTGGT
GATGGCCCTGTTGGCTTTGATGGCCACCGTGACGATGACCTTCGTCCTGG
TGAGCGGCGTCCAAATGCGCTCTGCCCGCGGCACCGCACTAGCCGACCTG
GACACCAACTCCCACGAAGCACTCCTCGACGGCGCGATGGATCAAGTGTT
GCGCGGCTCCGACAATTACACTTCGCCGATCGGTGCACATAGCTTGATCG
AAGACGTCTACGGAATTGATGCACGTTTGAACGGAATGGGTGGTATGTTA
TTTCAACCGCGTAACCCCCGCCGAGGCGTACTGCTGCTGGTGGTGATGGC
CCTGTTGGCTTTGATGGCCACCGTGACGATGACCTTCGTCCTGGTGAGCG
GCGTCCAAATGCGCTCTGCCCGCGGCACCGCACTAGCCGACCTGGACACC
AACTCCCACGAAGCACTCCTCGACGGCGCGATGGATCAAGTGTTGCGCGG
CTCCGACAATTACACTTCGCCGATCGGTGCACATAGCTTGATCGAAGACG
TCTACGGAATTGATGCACGTTTGAACGGAATGGGTGGT
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