mRNA_M-pyrifera_M_contig103070.652.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103070.652.1
Unique NamemRNA_M-pyrifera_M_contig103070.652.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103070.652.1 vs. uniprot
Match: A0A7C2SMT5_9DELT (Tetratricopeptide repeat protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2SMT5_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 1.430e-7
Identity = 55/152 (36.18%), Postives = 74/152 (48.68%), Query Frame = 1 
Query:   64 DEAIAALEAITQRMPDFLDARVQ-----LIGMYVDAGRHDSAQAAASSLLREHPGEARTHNLLGVVMMARGRRDEAAKQFASARELEPDATLAILNQARLARLGDRLEAAAALYRETLKREPAAADARLELAQVLLAGGDPGAATQVIEPLL 504
            DEA+  L A   R  D  DA+ +     L+ +   AGR   A A  S L    P  A  H L G V++A GRR+EAA  + +A   +P A  A+  +AR+ R   RL  A AL+  T K   A      E AQ +LA GD   A + +E L+
Sbjct:  645 DEAVKLLRA---RKSDLGDAKYEPALRALVELERTAGRTPQALALLSDLAAGRPDAAPLHALRGDVLLADGRREEAAAAYEAALRADPAAPAALAGKARVLRAEGRLADAVALFDRTPKGA-AGGQYEYEAAQAVLASGDEAGARKRLEELV 792
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103070.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C2SMT5_9DELT1.430e-736.18Tetratricopeptide repeat protein n=1 Tax=Deltaprot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103070contigM-pyrifera_M_contig103070:134..640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.5318801-CDS-M-pyrifera_M_contig103070:133..6401622815535.5318801-CDS-M-pyrifera_M_contig103070:133..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103070 134..640 -
1692277453.4703887-CDS-M-pyrifera_M_contig103070:133..6401692277453.4703887-CDS-M-pyrifera_M_contig103070:133..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103070 134..640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103070.652.1prot_M-pyrifera_M_contig103070.652.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103070 134..640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103070.652.1

>prot_M-pyrifera_M_contig103070.652.1 ID=prot_M-pyrifera_M_contig103070.652.1|Name=mRNA_M-pyrifera_M_contig103070.652.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
APEQVGFALGLSASRFAAGKVDEAIAALEAITQRMPDFLDARVQLIGMYV
DAGRHDSAQAAASSLLREHPGEARTHNLLGVVMMARGRRDEAAKQFASAR
ELEPDATLAILNQARLARLGDRLEAAAALYRETLKREPAAADARLELAQV
LLAGGDPGAATQVIEPLLE
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mRNA from alignment at M-pyrifera_M_contig103070:134..640-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103070.652.1 ID=mRNA_M-pyrifera_M_contig103070.652.1|Name=mRNA_M-pyrifera_M_contig103070.652.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig103070:134..640- (Macrocystis pyrifera P11B4 male)
GCACCCGAACAGGTGGGCTTCGCGCTGGGCCTGTCGGCAAGTCGTTTCGC
CGCCGGAAAAGTCGACGAAGCAATCGCGGCGCTTGAAGCGATAACGCAGA
GAATGCCCGATTTTCTCGACGCGCGGGTCCAGTTGATCGGGATGTATGTG
GATGCGGGGCGACATGATTCCGCGCAAGCAGCAGCGAGCAGCTTGTTGCG
CGAGCATCCGGGCGAAGCGCGCACGCATAATCTTCTGGGTGTGGTCATGA
TGGCACGCGGCCGACGCGATGAAGCGGCGAAACAATTCGCTTCTGCACGC
GAACTCGAACCGGACGCAACGCTCGCGATTCTGAATCAGGCGCGGCTTGC
GCGCCTAGGTGATCGGCTCGAAGCGGCGGCCGCTCTCTACCGTGAGACAC
TCAAGCGCGAACCGGCCGCGGCAGATGCGCGCCTGGAACTCGCCCAGGTC
CTTCTGGCCGGCGGGGATCCGGGAGCCGCAACGCAGGTGATCGAGCCGCT
GCTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103070:134..640-

>mRNA_M-pyrifera_M_contig103070.652.1 ID=mRNA_M-pyrifera_M_contig103070.652.1|Name=mRNA_M-pyrifera_M_contig103070.652.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig103070:134..640- (Macrocystis pyrifera P11B4 male)
GCACCCGAACAGGTGGGCTTCGCGCTGGGCCTGTCGGCAAGTCGTTTCGC
CGCCGGAAAAGTCGACGAAGCAATCGCGGCGCTTGAAGCGATAACGCAGA
GAATGCCCGATTTTCTCGACGCGCGGGTCCAGTTGATCGGGATGTATGTG
GATGCGGGGCGACATGATTCCGCGCAAGCAGCAGCGAGCAGCTTGTTGCG
CGAGCATCCGGGCGAAGCGCGCACGCATAATCTTCTGGGTGTGGTCATGA
TGGCACGCGGCCGACGCGATGAAGCGGCGAAACAATTCGCTTCTGCACGC
GAACTCGAACCGGACGCAACGCTCGCGATTCTGAATCAGGCGCGGCTTGC
GCGCCTAGGTGATCGGCTCGAAGCGGCGGCCGCTCTCTACCGTGAGACAC
TCAAGCGCGAACCGGCCGCGGCAGATGCGCGCCTGGAACTCGCCCAGGTC
CTTCTGGCCGGCGGGGATCCGGGAGCCGCAACGCAGGTGATCGAGCCGCT
GCTCGAGGCACCCGAACAGGTGGGCTTCGCGCTGGGCCTGTCGGCAAGTC
GTTTCGCCGCCGGAAAAGTCGACGAAGCAATCGCGGCGCTTGAAGCGATA
ACGCAGAGAATGCCCGATTTTCTCGACGCGCGGGTCCAGTTGATCGGGAT
GTATGTGGATGCGGGGCGACATGATTCCGCGCAAGCAGCAGCGAGCAGCT
TGTTGCGCGAGCATCCGGGCGAAGCGCGCACGCATAATCTTCTGGGTGTG
GTCATGATGGCACGCGGCCGACGCGATGAAGCGGCGAAACAATTCGCTTC
TGCACGCGAACTCGAACCGGACGCAACGCTCGCGATTCTGAATCAGGCGC
GGCTTGCGCGCCTAGGTGATCGGCTCGAAGCGGCGGCCGCTCTCTACCGT
GAGACACTCAAGCGCGAACCGGCCGCGGCAGATGCGCGCCTGGAACTCGC
CCAGGTCCTTCTGGCCGGCGGGGATCCGGGAGCCGCAACGCAGGTGATCG
AGCCGCTGCTCGAG
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