mRNA_M-pyrifera_M_contig103038.637.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103038.637.1
Unique NamemRNA_M-pyrifera_M_contig103038.637.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: A0A067LC60_JATCU (C3H1-type domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067LC60_JATCU)

HSP 1 Score: 63.9 bits (154), Expect = 1.010e-9
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   22 VGSIRAHEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQVISGHSSAVSSVGLIGQCAISACTGADEPVRLWDI 258
            V +IRAH+  +TC+ +  +G+   +GS+D TVKVWD++ L C+Q++ GH+  V S+     C ++     D  V+ W I
Sbjct:  201 VANIRAHKMPITCLNIGFNGKFLYSGSMDSTVKVWDLETLQCNQILEGHNDVVMSLLSWDNCLLTC--SLDHTVKFWVI 277          
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: D2VI77_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VI77_NAEGR)

HSP 1 Score: 62.0 bits (149), Expect = 5.400e-9
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 DLGKNAEVGSIRAHEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQVISGHSSAVSS 186
            DL  +++VG +R H+  + C+ L+ DG+ C+TGS D TVK WD++   C Q  S +SS  S+
Sbjct:  111 DLRTSSKVGKLRGHKDNIRCLKLTTDGKNCITGSTDGTVKYWDLRNQRCLQTFSFNSSKTST 172          
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: A0A0K6GCL9_9AGAM (Kinesin-like protein KIF21B n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6GCL9_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 3.630e-8
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   22 VGSIRAHEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQV-ISGHSSAVSSVGLI-GQCAISACTGADEPVRLWDISCAAPLPSLPSLSP 300
            VG +R H   +   A S D R  VTGSVD+T+ VWD+ K     V   GH+  V+SV L  G   + +C   D  +R+W+  CA     +P+L+P
Sbjct: 1223 VGPLRGHTNQIISCAFSVDSRYLVTGSVDRTICVWDLNKAELVGVPFRGHARDVTSVALFPGASRVVSCCYYDATIRIWNTHCAM----IPALAP 1313          
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: A0A410FUV8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Bipolaricaulis sibiricus TaxID=2501609 RepID=A0A410FUV8_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 7.250e-8
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   40 HEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQVISGHSSAVSSVGLIGQCAISACTGADEPV-RLWDIS 261
            HE     VA+S DGR  ++GS+D+T ++WD +  HC  V+ GH + V  VG    C +   T +D  V R+W ++
Sbjct:  230 HESCAITVAVSPDGRLYLSGSLDETARLWDAETGHCVAVLEGHGAVVQEVGF-SPCGMLIVTASDNGVVRIWRVA 303          
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: UPI000B76F7ED (zinc finger CCCH domain-containing protein 48-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B76F7ED)

HSP 1 Score: 58.5 bits (140), Expect = 8.070e-8
Identity = 25/79 (31.65%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   16 AEVGSIRAHEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQVISGHSSAVSSVGLIGQCAISACTGADEPVRLW 252
            A+V ++R H+K + C+ +     +  +GS+D TV VWD++ L C Q ++GH   V S+    QC ++     D  ++ W
Sbjct:  193 AKVATLRGHQKAVVCLNIGSGVNSLYSGSMDNTVTVWDLETLQCKQTLNGHKDVVMSLLSWDQCLLTC--SLDHTMKFW 269          
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: A0A6A6MYE3_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MYE3_HEVBR)

HSP 1 Score: 58.5 bits (140), Expect = 8.300e-8
Identity = 24/67 (35.82%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   16 AEVGSIRAHEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQVISGHSSAVSSVGLIGQCAIS 216
            A V ++R H+KV+ C+ +     +  +GS+D TVKVWD++ + C Q ++GH + V S+    QC ++
Sbjct:  227 AMVATLRGHKKVVVCLNVGSGVHSLYSGSMDNTVKVWDLETMQCKQTLNGHKNVVMSLLSWDQCLLT 293          
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: UPI001D03B3E7 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D03B3E7)

HSP 1 Score: 56.2 bits (134), Expect = 5.870e-7
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    1 DLGKNAEVGSIRAHEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQVIS 162
            D   + ++G +R H+  + CV LS DG+ C+TGS D TVK WD++   C Q  S
Sbjct:  278 DFRTSTKIGKLRGHKDNIRCVLLSVDGKKCITGSTDGTVKCWDLKTQRCLQTYS 331          
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: A0A8H3A2C8_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3A2C8_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 1.100e-6
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 1
Query:   25 GSIRAHEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQV-ISGHSSAVSSVGLIGQCA-ISACTGADEPVRLWDISCAA-PLPSLPSLSPQ 303
            G +  H   +   A S D R  VTGS+D+T+ VWD+ K     V   GH S V SV L    + + +C   DE +R+W+  CA  P P+ P+ S +
Sbjct:  924 GPLCGHTDKIISSAFSADSRYLVTGSLDRTICVWDLNKAELVGVPFRGHGSDVISVALFPDASRVVSCCYDDETIRIWNTHCAMIPTPAPPNSSAE 1019          
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: UPI00148A7053 (NACHT domain- and WD repeat-containing protein 1 isoform X1 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A7053)

HSP 1 Score: 55.1 bits (131), Expect = 1.530e-6
Identity = 24/76 (31.58%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   40 HEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQVISGHSSAVSSVGLIGQCAISACTGADEPVRLWDISCA 267
            H+ ++TCVA++ DG+  ++G  D  VK+WD++    S+   GHS AV+S+      A +  +  D  +++W ++ A
Sbjct: 1217 HKCMITCVAVTSDGKIGMSGGTDGEVKLWDLETNTYSESFLGHSGAVASIEPASNGAFTVTSAEDRKIKVWSMTLA 1292          
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Match: UPI001A8F8577 (CHAT domain-containing protein n=1 Tax=Phormidium pseudopriestleyi TaxID=1759527 RepID=UPI001A8F8577)

HSP 1 Score: 54.7 bits (130), Expect = 2.000e-6
Identity = 29/85 (34.12%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   19 EVGSIRAHEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCSQVISGHSSAVSSV-----GLIGQCAISACTGADEPVRLWDI 258
            EV ++  H   +  VA+S DGR   +GS DQT+K+WD+QK    + + GH+  V+SV     G++     S     D  ++LW++
Sbjct:  393 EVTTLTGHSSGVKSVAISPDGRMIASGSFDQTIKLWDLQKGEFKKPLKGHTGTVTSVQFRQDGVLA----SGSFFPDGTIKLWEV 473          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103038.637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067LC60_JATCU1.010e-936.71C3H1-type domain-containing protein n=1 Tax=Jatrop... [more]
D2VI77_NAEGR5.400e-941.94Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A0K6GCL9_9AGAM3.630e-837.89Kinesin-like protein KIF21B n=1 Tax=Rhizoctonia so... [more]
A0A410FUV8_9BACT7.250e-837.33Uncharacterized protein n=1 Tax=Candidatus Bipolar... [more]
UPI000B76F7ED8.070e-831.65zinc finger CCCH domain-containing protein 48-like... [more]
A0A6A6MYE3_HEVBR8.300e-835.82Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
UPI001D03B3E75.870e-742.59uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A8H3A2C8_9AGAM1.100e-636.46Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
UPI00148A70531.530e-631.58NACHT domain- and WD repeat-containing protein 1 i... [more]
UPI001A8F85772.000e-634.12CHAT domain-containing protein n=1 Tax=Phormidium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103038contigM-pyrifera_M_contig103038:345..656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog5762.XP_002676206.1
Preferred nameWDR48
KEGG koko:K15361
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000724,GO:0000725,GO:0001501,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007276,GO:0007283,GO:0007338,GO:0007548,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008284,GO:0008406,GO:0008584,GO:0009566,GO:0009653,GO:0009790,GO:0009887,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019953,GO:0022414,GO:0030162,GO:0030428,GO:0031323,GO:0031325,GO:0031396,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0034641,GO:0035264,GO:0035295,GO:0036211,GO:0036459,GO:0040007,GO:0040012,GO:0040017,GO:0042127,GO:0042592,GO:0042769,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043588,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045862,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048513,GO:0048518,GO:0048520,GO:0048522,GO:0048568,GO:0048589,GO:0048608,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048872,GO:0050678,GO:0050679,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051286,GO:0051606,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0061458,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072520,GO:0080090,GO:0090085,GO:0090304,GO:0090325,GO:0090326,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1902525,GO:1903003,GO:1903320,GO:1903322,GO:1903827,GO:1903829,GO:2000008,GO:2000010
EggNOG free text desc.regulation of protein monoubiquitination
EggNOG OGsKOG0308@1,KOG0308@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.801224-CDS-M-pyrifera_M_contig103038:344..6561622815534.801224-CDS-M-pyrifera_M_contig103038:344..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103038 345..656 -
1692277453.2143755-CDS-M-pyrifera_M_contig103038:344..6561692277453.2143755-CDS-M-pyrifera_M_contig103038:344..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103038 345..656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103038.637.1prot_M-pyrifera_M_contig103038.637.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103038 345..656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103038.637.1

>prot_M-pyrifera_M_contig103038.637.1 ID=prot_M-pyrifera_M_contig103038.637.1|Name=mRNA_M-pyrifera_M_contig103038.637.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
DLGKNAEVGSIRAHEKVLTCVALSDDGRTCVTGSVDQTVKVWDVQKLHCS
QVISGHSSAVSSVGLIGQCAISACTGADEPVRLWDISCAAPLPSLPSLSP
QWS*
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mRNA from alignment at M-pyrifera_M_contig103038:345..656-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103038.637.1 ID=mRNA_M-pyrifera_M_contig103038.637.1|Name=mRNA_M-pyrifera_M_contig103038.637.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig103038:345..656- (Macrocystis pyrifera P11B4 male)
GACCTGGGCAAGAATGCTGAGGTCGGCTCCATCAGGGCCCACGAAAAGGT GCTGACCTGCGTCGCCCTCTCCGACGACGGCCGCACCTGCGTCACCGGCT CGGTCGACCAGACAGTGAAGGTGTGGGACGTGCAGAAGCTGCACTGCTCC CAGGTCATCTCCGGCCACTCCTCCGCTGTCTCCTCGGTCGGCCTCATTGG CCAGTGCGCCATCAGCGCCTGCACTGGCGCCGACGAGCCGGTCAGGCTCT GGGACATCTCGTGCGCCGCCCCTCTCCCCTCCCTTCCTTCCCTCTCTCCA CAGTGGAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103038:345..656-

>mRNA_M-pyrifera_M_contig103038.637.1 ID=mRNA_M-pyrifera_M_contig103038.637.1|Name=mRNA_M-pyrifera_M_contig103038.637.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig103038:345..656- (Macrocystis pyrifera P11B4 male)
GACCTGGGCAAGAATGCTGAGGTCGGCTCCATCAGGGCCCACGAAAAGGT
GCTGACCTGCGTCGCCCTCTCCGACGACGGCCGCACCTGCGTCACCGGCT
CGGTCGACCAGACAGTGAAGGTGTGGGACGTGCAGAAGCTGCACTGCTCC
CAGGTCATCTCCGGCCACTCCTCCGCTGTCTCCTCGGTCGGCCTCATTGG
CCAGTGCGCCATCAGCGCCTGCACTGGCGCCGACGAGCCGGTCAGGCTCT
GGGACATCTCGTGCGCCGCCCCTCTCCCCTCCCTTCCTTCCCTCTCTCCA
CAGTGGAGCTGAGACCTGGGCAAGAATGCTGAGGTCGGCTCCATCAGGGC
CCACGAAAAGGTGCTGACCTGCGTCGCCCTCTCCGACGACGGCCGCACCT
GCGTCACCGGCTCGGTCGACCAGACAGTGAAGGTGTGGGACGTGCAGAAG
CTGCACTGCTCCCAGGTCATCTCCGGCCACTCCTCCGCTGTCTCCTCGGT
CGGCCTCATTGGCCAGTGCGCCATCAGCGCCTGCACTGGCGCCGACGAGC
CGGTCAGGCTCTGGGACATCTCGTGCGCCGCCCCTCTCCCCTCCCTTCCT
TCCCTCTCTCCACAGTGGAGCTGA
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