mRNA_M-pyrifera_M_contig103033.636.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103033.636.1
Unique NamemRNA_M-pyrifera_M_contig103033.636.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: EIF3G_NEMVE (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Nematostella vectensis TaxID=45351 RepID=EIF3G_NEMVE)

HSP 1 Score: 132 bits (331), Expect = 5.780e-35
Identity = 70/157 (44.59%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    1 GDHWTLKCPLRHKFEVPGGDDEEDDG-------------PSIGMXXXXXXXGEGRSALGLRSYIPPNRREDREEATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPSTRE 432
            GDHWT KCP + + EV     +EDDG             P+             R     R    P+R +  E AT+RV+NLSEET E D+Q+LF+  GPI RI+LAKDK+T  +KGFAF+N+  R DA RAI+ L G GY +LI++ EWA+PST++
Sbjct:  138 GDHWTTKCPYKDQLEVIHQQLKEDDGSGQPGTPPSEPANPAAASTSGKYVAPGLRDGANRRGETMPSRSQRDETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVEWAKPSTQQ 294          
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: R7TIL6_CAPTE (Eukaryotic translation initiation factor 3 subunit G n=2 Tax=Capitella teleta TaxID=283909 RepID=R7TIL6_CAPTE)

HSP 1 Score: 127 bits (320), Expect = 2.350e-33
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 1
Query:    1 GDHWTLKCPLRHKFEV--PGGDDEEDDGPSIGMXXXXXXXGEGRSALGLRSYIPPNRREDR-------------EEATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPS 423
            GDHWT KCP +          D+++ DG ++         G   +      Y+PPN R+               E AT+RV+NLSE+T E D+Q+LFK +G I RIYLAKDK TG +KGFAF+N++ R DA RAI+ + G GY +LI++ EWA+PS
Sbjct:  132 GDHWTTKCPYKDSLAPLQESLDEKKKDGDAVDAAPGAPPGGAAAAKAPGGKYVPPNLRDGGNRRGESMMGGRKDESATIRVTNLSEDTREADLQELFKPFGNISRIYLAKDKVTGQSKGFAFINFHRREDAARAIQGISGFGYDHLILNVEWAKPS 287          
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: UPI001E1DF8C6 (eukaryotic translation initiation factor 3 subunit G-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF8C6)

HSP 1 Score: 127 bits (319), Expect = 3.610e-33
Identity = 74/158 (46.84%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    1 GDHWTLKCPLRHKF----EVPGGDDEEDDGPSIGMXXXXXXXGEGRSALGLRSYIPPNRREDR-------------EEATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPS 423
            GDHWT KCP +       E   GD ++ D P   +  XXXXX    +  G + Y+PP+ R+               E AT+RV+NLSE+T E D+Q+LF+ +GPIQRIYLAKDK TG +KGFAF+N++ R DA RAI  + G GY +LI++ EWA+PS
Sbjct:  136 GDHWTTKCPYKDTLAPLQETLEGDKKKPDEPGTPVAAXXXXXXXAANKPGGK-YVPPSMRDGAAKGRGETMKSSRDESATIRVTNLSEDTRESDLQELFRPFGPIQRIYLAKDKNTGQSKGFAFINFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 292          
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: A0A6P8IFV1_ACTTE (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IFV1_ACTTE)

HSP 1 Score: 126 bits (317), Expect = 6.860e-33
Identity = 70/158 (44.30%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    1 GDHWTLKCPLRHKFEVPGGDDEEDDGPSIGMXXXXXXXGEGRSALGLRSYIPP-------NRREDR-------EEATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPSTRE 432
            GDHWT KCP + + EV     +E++    G         +  +  G   YI P       NRR +        E AT+RV+NLSEET E D+Q+LF+ +GPI RI+LAKDK+T  +KGFAF+N+  R DA RAI+ L G GY +LI++ EWA+PST +
Sbjct:  138 GDHWTTKCPYKDQLEVIQQQLKEEEAGLPGTPPSEPANPQPMNTTG--KYIAPGLRDGGANRRGETMPHSQRDENATIRVTNLSEETRESDLQELFRPFGPISRIFLAKDKFTNQSKGFAFINFVYRDDAARAIQSLRGFGYDHLILNVEWAKPSTTQ 293          
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: A0A433TWG3_ELYCH (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TWG3_ELYCH)

HSP 1 Score: 126 bits (316), Expect = 7.910e-33
Identity = 70/158 (44.30%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    1 GDHWTLKCPLRHKFEVPGGDDEEDDGPSIGMXXXXXXXGEGRSALGLRSYIPPNRREDR--------------EEATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPSTRE 432
            GDHWT KCP +   + P     E+      +       G   +A G   YIPP  RE                E AT+RV+NLSE+T E D+Q+LF+ +GPI RIYLAKDK TG +KGFAF+N++ R DA RAI+ + G GY +LI++ EWA+PST++
Sbjct:  130 GDHWTTKCPYKDTLQ-PLQQKLEEGAAKPEIAPVSAPTGPKSTAGG--KYIPPTLREGANKGRGESMTMQRKDETATIRVTNLSEDTRESDLQELFRPFGPISRIYLAKDKNTGQSKGFAFINFHRREDAARAIQGVSGFGYDHLILNVEWAKPSTQQ 284          
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: A0A481T013_9NEOP (Eukaryotic translation initiation factor 3 subunit G n=2 Tax=Photininae TaxID=267082 RepID=A0A481T013_9NEOP)

HSP 1 Score: 126 bits (316), Expect = 1.030e-32
Identity = 67/160 (41.88%), Postives = 98/160 (61.25%), Query Frame = 1
Query:    1 GDHWTLKCPLRHKFEVPGGDDEEDDGP----SIGMXXXXXXXGEGRSALGLRSYIPPNRRED------------REEAT-VRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPSTR 429
            GDHWT KCP +    +PGG   E+  P    S+G+        + +S +    Y+PPN RE             R++AT +RVSNLSE T E D++DL K +GPI ++YLAKDK TG  KGFA++++ +R DA +AI  L+GHGY +LI++ +W++P  +
Sbjct:  136 GDHWTTKCPFKDTV-LPGGKLPEEKKPEAGGSLGVGGPMVGGVDDKSKVQNSKYVPPNLREGSNKRGDSMSNPRRDDATAIRVSNLSESTTEADLEDLVKPFGPIHKLYLAKDKLTGHCKGFAYIHFKNRSDAAKAIAALNGHGYDHLILNVDWSKPPAQ 294          
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: A0A176W9G2_MARPO (Eukaryotic translation initiation factor 3 subunit G n=4 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W9G2_MARPO)

HSP 1 Score: 125 bits (315), Expect = 1.190e-32
Identity = 68/159 (42.77%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    1 GDHWTLKCPLRHKF------EVPGGDDEEDDGPSIGMXXXXXXXGEGRSALGLRSYIPPNRR-----------EDREEATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPST 426
            GDHWT KCP +         E P GDD+      +GM       G+        SY+PP+ R           + R++ ++RV+NLSE+T E+D+Q+LF+ +G I RIY+A D+ TG+++GFAF+N+ SR DA RAI +LDG+GY NLI+  EWA P T
Sbjct:  139 GDHWTSKCPFKELAANRGFGEKPPGDDD------MGMSTSAGPGGKA-------SYVPPSMRGGSKGDGESMRKGRDDNSIRVTNLSEDTREQDLQELFRPFGSISRIYVAFDRDTGLSRGFAFINFVSREDAVRAINKLDGYGYDNLILRVEWATPRT 284          
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: A0A1Z5KVS4_ORNMO (RRM domain-containing protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KVS4_ORNMO)

HSP 1 Score: 123 bits (308), Expect = 1.220e-32
Identity = 66/154 (42.86%), Postives = 89/154 (57.79%), Query Frame = 1
Query:    4 DHWTLKCPLRHKFEVPGGDDEEDDGPSIGMXXXXXXXGEGRSALGLRSYIPPNRREDR--------------EEATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPS 423
            DHWT +CP + K  +P    EE    + G         E ++  G   Y+PP+ RE                E AT+RV+NLSEE  + D+QDLF+ +G I RIYLAKDK TG +KGFAF+N+  + DA +AI  ++G GY NLI+  EWA+PS
Sbjct:   37 DHWTTQCPFKDKVALPEHLKEEAKAGAAGAAAVPLPEVEEKAKSG--KYVPPSMREGANRRGESMAQTRTRDEAATIRVTNLSEEVRDSDLQDLFRPFGQIARIYLAKDKVTGQSKGFAFINFVHKEDAAKAIANVNGFGYDNLILSVEWAKPS 188          
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: UPI001F041EAE (eukaryotic translation initiation factor 3 subunit G-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F041EAE)

HSP 1 Score: 125 bits (313), Expect = 2.640e-32
Identity = 71/156 (45.51%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    1 GDHWTLKCPLRHKFEVPGGDDEEDDGPSIGMXXXXXXXGEGRSALGLRSYIPPNRRE-------------DREE-ATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPST 426
            GDHWTLKCP +   E      +E++    G               G   Y+ P RRE             +REE AT+RV+NLSE+T E D+QDLF+ +GPI RIYLAKDK T  +KGFAF+N+  R DA +AIK + G GY +LI++ EWARPS 
Sbjct:  138 GDHWTLKCPYKDTLEPLQQQLKEEENGGSGSGEGNNKATSFNQTGG--KYVAPGRREGASGRGEMMSTRNNREETATIRVTNLSEDTRESDLQDLFRPFGPISRIYLAKDKITNQSKGFAFINFIRRDDAAQAIKCVSGLGYDHLILNVEWARPSN 291          
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Match: A0A0B6YAL8_9EUPU (RRM domain-containing protein (Fragment) n=2 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YAL8_9EUPU)

HSP 1 Score: 125 bits (313), Expect = 2.820e-32
Identity = 71/165 (43.03%), Postives = 95/165 (57.58%), Query Frame = 1
Query:    1 GDHWTLKCP-------LRHKFEVPGGDDEEDDGPSIGMXXXXXXXGEGRSALGLRSYIPPNRREDR--------------EEATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTGMAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPSTRE 432
            GDHWT KCP       L+ K E   G  + +  P+          G+         YIPP  RE                E AT+RV+NLSE+T E D+Q+LF+ +GPI RIYLAKDK TG +KGFAF+N++ R DA RAI+ + G GY +LI++ EWA+PST++
Sbjct:  142 GDHWTTKCPYKDTLQPLQEKLEE--GAKKTEAPPTSSASPAPKTGGK---------YIPPTMREGANKGRGESMATQRKDEAATIRVTNLSEDTRESDLQELFRPFGPISRIYLAKDKITGQSKGFAFINFHRREDAARAIQGVSGFGYDHLILNVEWAKPSTQQ 295          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103033.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
EIF3G_NEMVE5.780e-3544.59Eukaryotic translation initiation factor 3 subunit... [more]
R7TIL6_CAPTE2.350e-3342.95Eukaryotic translation initiation factor 3 subunit... [more]
UPI001E1DF8C63.610e-3346.84eukaryotic translation initiation factor 3 subunit... [more]
A0A6P8IFV1_ACTTE6.860e-3344.30Eukaryotic translation initiation factor 3 subunit... [more]
A0A433TWG3_ELYCH7.910e-3344.30Eukaryotic translation initiation factor 3 subunit... [more]
A0A481T013_9NEOP1.030e-3241.88Eukaryotic translation initiation factor 3 subunit... [more]
A0A176W9G2_MARPO1.190e-3242.77Eukaryotic translation initiation factor 3 subunit... [more]
A0A1Z5KVS4_ORNMO1.220e-3242.86RRM domain-containing protein (Fragment) n=1 Tax=O... [more]
UPI001F041EAE2.640e-3245.51eukaryotic translation initiation factor 3 subunit... [more]
A0A0B6YAL8_9EUPU2.820e-3243.03RRM domain-containing protein (Fragment) n=2 Tax=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103033contigM-pyrifera_M_contig103033:216..656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score132.9
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog45351.EDO35846
Preferred nameEIF3G
KEGG koko:K03248
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016032,GO:0019080,GO:0019081,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0051704,GO:0071704,GO:0075525,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA
EggNOG OGs38H4F@33154,3BCY9@33208,KOG0122@1,KOG0122@2759
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.7490063-CDS-M-pyrifera_M_contig103033:215..6561622815534.7490063-CDS-M-pyrifera_M_contig103033:215..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103033 216..656 -
1692277453.202034-CDS-M-pyrifera_M_contig103033:215..6561692277453.202034-CDS-M-pyrifera_M_contig103033:215..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103033 216..656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103033.636.1prot_M-pyrifera_M_contig103033.636.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103033 216..656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103033.636.1

>prot_M-pyrifera_M_contig103033.636.1 ID=prot_M-pyrifera_M_contig103033.636.1|Name=mRNA_M-pyrifera_M_contig103033.636.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
GDHWTLKCPLRHKFEVPGGDDEEDDGPSIGMGRGRGAGGEGRSALGLRSY
IPPNRREDREEATVRVSNLSEETDERDIQDLFKRYGPIQRIYLAKDKYTG
MAKGFAFVNYYSRPDAERAIKELDGHGYLNLIMHCEWARPSTRERY*
back to top

mRNA from alignment at M-pyrifera_M_contig103033:216..656-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103033.636.1 ID=mRNA_M-pyrifera_M_contig103033.636.1|Name=mRNA_M-pyrifera_M_contig103033.636.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig103033:216..656- (Macrocystis pyrifera P11B4 male)
GGAGATCACTGGACCCTCAAGTGCCCCCTGCGACACAAGTTCGAGGTTCC TGGTGGCGACGACGAGGAGGACGACGGTCCTTCGATTGGAATGGGCCGTG GCCGTGGTGCCGGAGGAGAGGGACGCTCTGCCCTTGGCCTTCGCTCATAC ATTCCCCCCAACCGCAGGGAGGACCGCGAGGAGGCAACTGTTCGTGTGTC GAACCTCTCGGAGGAGACAGACGAGCGCGACATCCAGGATCTCTTCAAGC GTTATGGACCCATCCAGCGCATCTACTTGGCGAAGGACAAGTACACAGGC ATGGCGAAGGGCTTTGCTTTCGTCAACTACTACTCTCGCCCCGATGCTGA GCGGGCCATCAAGGAGCTCGATGGCCACGGTTACCTCAACCTCATCATGC ACTGCGAGTGGGCCCGCCCGTCTACTCGTGAACGATATTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103033:216..656-

>mRNA_M-pyrifera_M_contig103033.636.1 ID=mRNA_M-pyrifera_M_contig103033.636.1|Name=mRNA_M-pyrifera_M_contig103033.636.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig103033:216..656- (Macrocystis pyrifera P11B4 male)
GGAGATCACTGGACCCTCAAGTGCCCCCTGCGACACAAGTTCGAGGTTCC
TGGTGGCGACGACGAGGAGGACGACGGTCCTTCGATTGGAATGGGCCGTG
GCCGTGGTGCCGGAGGAGAGGGACGCTCTGCCCTTGGCCTTCGCTCATAC
ATTCCCCCCAACCGCAGGGAGGACCGCGAGGAGGCAACTGTTCGTGTGTC
GAACCTCTCGGAGGAGACAGACGAGCGCGACATCCAGGATCTCTTCAAGC
GTTATGGACCCATCCAGCGCATCTACTTGGCGAAGGACAAGTACACAGGC
ATGGCGAAGGGCTTTGCTTTCGTCAACTACTACTCTCGCCCCGATGCTGA
GCGGGCCATCAAGGAGCTCGATGGCCACGGTTACCTCAACCTCATCATGC
ACTGCGAGTGGGCCCGCCCGTCTACTCGTGAACGATATTAGGGAGATCAC
TGGACCCTCAAGTGCCCCCTGCGACACAAGTTCGAGGTTCCTGGTGGCGA
CGACGAGGAGGACGACGGTCCTTCGATTGGAATGGGCCGTGGCCGTGGTG
CCGGAGGAGAGGGACGCTCTGCCCTTGGCCTTCGCTCATACATTCCCCCC
AACCGCAGGGAGGACCGCGAGGAGGCAACTGTTCGTGTGTCGAACCTCTC
GGAGGAGACAGACGAGCGCGACATCCAGGATCTCTTCAAGCGTTATGGAC
CCATCCAGCGCATCTACTTGGCGAAGGACAAGTACACAGGCATGGCGAAG
GGCTTTGCTTTCGTCAACTACTACTCTCGCCCCGATGCTGAGCGGGCCAT
CAAGGAGCTCGATGGCCACGGTTACCTCAACCTCATCATGCACTGCGAGT
GGGCCCGCCCGTCTACTCGTGAACGATATTAG
back to top