mRNA_M-pyrifera_M_contig103022.633.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103022.633.1
Unique NamemRNA_M-pyrifera_M_contig103022.633.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103022.633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103022contigM-pyrifera_M_contig103022:2..655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score124.0
Seed ortholog evalue8.5e-26
Seed eggNOG ortholog369723.Strop_0492
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bacterial transcriptional activator domain
EggNOG OGs2GIZ1@201174,4DH5A@85008,COG3629@1,COG3629@2,COG3903@1,COG3903@2
COG Functional cat.K
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size654
Cds size654
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.597573-CDS-M-pyrifera_M_contig103022:1..6551622815534.597573-CDS-M-pyrifera_M_contig103022:1..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103022 2..655 -
1692277453.164814-CDS-M-pyrifera_M_contig103022:1..6551692277453.164814-CDS-M-pyrifera_M_contig103022:1..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103022 2..655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103022.633.1prot_M-pyrifera_M_contig103022.633.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103022 2..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103022.633.1

>prot_M-pyrifera_M_contig103022.633.1 ID=prot_M-pyrifera_M_contig103022.633.1|Name=mRNA_M-pyrifera_M_contig103022.633.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
DWAIDQDDLSLATDLVWPIVTQGFLRRGLGELRDWIERIMELAGPDDESA
IADGLLWTALYYVMTEDRSDFHHLIDRFGEPDLIFARLARLVMDGDESAV
VNAAPEAIAEARRRGDTLLADLFAVLVAGNLISCGQLDEAESYAKGIVER
IEGTMAPTVLNWLQYIIATVRAIRGDAAGADAIYDRIASMPLPPRTNSPN
ETLAARRAFRTGDHHSAY
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mRNA from alignment at M-pyrifera_M_contig103022:2..655-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103022.633.1 ID=mRNA_M-pyrifera_M_contig103022.633.1|Name=mRNA_M-pyrifera_M_contig103022.633.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig103022:2..655- (Macrocystis pyrifera P11B4 male)
GACTGGGCAATCGATCAGGACGACCTCAGCCTCGCAACCGACCTCGTCTG
GCCGATCGTCACCCAAGGCTTCCTGCGCCGCGGCCTCGGCGAACTTCGGG
ACTGGATCGAACGGATCATGGAGCTCGCCGGCCCCGACGACGAAAGCGCC
ATCGCCGACGGCTTGCTCTGGACCGCTCTCTACTACGTCATGACCGAGGA
TCGTTCAGACTTCCATCACCTCATCGACCGGTTCGGCGAACCGGACCTCA
TCTTCGCGAGGCTCGCCCGACTTGTGATGGACGGTGACGAATCCGCTGTC
GTCAACGCCGCCCCCGAGGCGATTGCTGAGGCACGGCGCCGAGGTGACAC
CCTGCTCGCCGACCTCTTCGCAGTCCTCGTTGCCGGCAACCTGATCAGCT
GCGGCCAACTCGACGAAGCCGAGTCCTACGCGAAGGGCATCGTGGAACGC
ATCGAGGGCACCATGGCGCCGACAGTCCTCAACTGGTTGCAGTACATCAT
CGCGACCGTCCGTGCGATTCGCGGCGATGCTGCCGGCGCCGACGCCATCT
ACGATCGAATCGCCTCCATGCCGCTGCCGCCCCGGACGAACTCCCCCAAC
GAAACCCTCGCCGCCAGGCGAGCATTCCGAACGGGCGACCATCACAGCGC
CTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103022:2..655-

>mRNA_M-pyrifera_M_contig103022.633.1 ID=mRNA_M-pyrifera_M_contig103022.633.1|Name=mRNA_M-pyrifera_M_contig103022.633.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig103022:2..655- (Macrocystis pyrifera P11B4 male)
GACTGGGCAATCGATCAGGACGACCTCAGCCTCGCAACCGACCTCGTCTG
GCCGATCGTCACCCAAGGCTTCCTGCGCCGCGGCCTCGGCGAACTTCGGG
ACTGGATCGAACGGATCATGGAGCTCGCCGGCCCCGACGACGAAAGCGCC
ATCGCCGACGGCTTGCTCTGGACCGCTCTCTACTACGTCATGACCGAGGA
TCGTTCAGACTTCCATCACCTCATCGACCGGTTCGGCGAACCGGACCTCA
TCTTCGCGAGGCTCGCCCGACTTGTGATGGACGGTGACGAATCCGCTGTC
GTCAACGCCGCCCCCGAGGCGATTGCTGAGGCACGGCGCCGAGGTGACAC
CCTGCTCGCCGACCTCTTCGCAGTCCTCGTTGCCGGCAACCTGATCAGCT
GCGGCCAACTCGACGAAGCCGAGTCCTACGCGAAGGGCATCGTGGAACGC
ATCGAGGGCACCATGGCGCCGACAGTCCTCAACTGGTTGCAGTACATCAT
CGCGACCGTCCGTGCGATTCGCGGCGATGCTGCCGGCGCCGACGCCATCT
ACGATCGAATCGCCTCCATGCCGCTGCCGCCCCGGACGAACTCCCCCAAC
GAAACCCTCGCCGCCAGGCGAGCATTCCGAACGGGCGACCATCACAGCGC
CTACGACTGGGCAATCGATCAGGACGACCTCAGCCTCGCAACCGACCTCG
TCTGGCCGATCGTCACCCAAGGCTTCCTGCGCCGCGGCCTCGGCGAACTT
CGGGACTGGATCGAACGGATCATGGAGCTCGCCGGCCCCGACGACGAAAG
CGCCATCGCCGACGGCTTGCTCTGGACCGCTCTCTACTACGTCATGACCG
AGGATCGTTCAGACTTCCATCACCTCATCGACCGGTTCGGCGAACCGGAC
CTCATCTTCGCGAGGCTCGCCCGACTTGTGATGGACGGTGACGAATCCGC
TGTCGTCAACGCCGCCCCCGAGGCGATTGCTGAGGCACGGCGCCGAGGTG
ACACCCTGCTCGCCGACCTCTTCGCAGTCCTCGTTGCCGGCAACCTGATC
AGCTGCGGCCAACTCGACGAAGCCGAGTCCTACGCGAAGGGCATCGTGGA
ACGCATCGAGGGCACCATGGCGCCGACAGTCCTCAACTGGTTGCAGTACA
TCATCGCGACCGTCCGTGCGATTCGCGGCGATGCTGCCGGCGCCGACGCC
ATCTACGATCGAATCGCCTCCATGCCGCTGCCGCCCCGGACGAACTCCCC
CAACGAAACCCTCGCCGCCAGGCGAGCATTCCGAACGGGCGACCATCACA
GCGCCTAC
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