mRNA_M-pyrifera_M_contig100283.63.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100283.63.1
Unique NamemRNA_M-pyrifera_M_contig100283.63.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: UPI0010AAFACF (xanthine dehydrogenase family protein subunit M n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI0010AAFACF)

HSP 1 Score: 119 bits (297), Expect = 3.690e-31
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSA 255
            PASRYA+ GVFV +G  G RVGVTGAGSDGVFRA+DMEAAL  +FS  +LD   VD++ MLSDLHG+SDYRANLVKV+A+RAV A
Sbjct:  179 PASRYAMTGVFVAKGAGGVRVGVTGAGSDGVFRATDMEAALGANFSGGALDATSVDSSGMLSDLHGSSDYRANLVKVMARRAVEA 263
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BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: UPI001CBBB308 (xanthine dehydrogenase family protein subunit M n=1 Tax=Oricola indica TaxID=2872591 RepID=UPI001CBBB308)

HSP 1 Score: 118 bits (295), Expect = 7.180e-31
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSAV 258
            PASRYA+ GVFV +G  G RVGVTGAG DG FR S+ EAAL  DFSA +LDG+ VDA +ML DLHG+++YRANLVKV+AKRAV+A+
Sbjct:  179 PASRYAMAGVFVAKGGDGVRVGVTGAGMDGAFRWSEAEAALGSDFSAGALDGLSVDAGDMLEDLHGSAEYRANLVKVMAKRAVAAI 264
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BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: A0A2E0IJ60_9HYPH (Carbon monoxide dehydrogenase n=2 Tax=Ahrensia sp. TaxID=1872419 RepID=A0A2E0IJ60_9HYPH)

HSP 1 Score: 115 bits (287), Expect = 1.150e-29
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSAV 258
            PASRYA+ GVFV +   G RVGVTGAG DGVFR  + E+AL   FSAD+LDG+ VDA +ML DLHG+ +YRANLVKV+AKRAV+A+
Sbjct:  179 PASRYAMAGVFVAKSGDGVRVGVTGAGMDGVFRWEEAESALSSSFSADALDGLSVDAGDMLEDLHGSGEYRANLVKVMAKRAVAAI 264
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BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: A0A6L7LPD4_9RHOB (Xanthine dehydrogenase family protein subunit M n=5 Tax=unclassified Boseongicola TaxID=2634418 RepID=A0A6L7LPD4_9RHOB)

HSP 1 Score: 113 bits (282), Expect = 6.410e-29
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSA 255
            PASRYA+ GVFV +G  G RVGVTGAG+DG FR +D EAALD +FSA +LDGI V A EMLSD+HG   YRANLV V+A+RAV+A
Sbjct:  179 PASRYAMCGVFVAKGDDGVRVGVTGAGADGAFRPADFEAALDGEFSAKALDGISVKAEEMLSDIHGDGVYRANLVSVMARRAVAA 263
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BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: A0A2D7UBU2_9PROT (Carbon monoxide dehydrogenase n=2 Tax=SAR116 cluster TaxID=62654 RepID=A0A2D7UBU2_9PROT)

HSP 1 Score: 112 bits (281), Expect = 8.280e-29
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSA 255
            PASRYA+VGVFV     G RV VTGAGSDGVFR  +ME+ALD  F ADSLDGI VDA EM+SD+H + DYRA+LV+ +AKRAV+A
Sbjct:  176 PASRYAMVGVFVASTGAGTRVAVTGAGSDGVFRHGEMESALDNSFGADSLDGIAVDADEMISDIHASGDYRAHLVREIAKRAVAA 260
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BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: A0A316FZU4_9RHOB (Carbon-monoxide dehydrogenase medium subunit n=1 Tax=Silicimonas algicola TaxID=1826607 RepID=A0A316FZU4_9RHOB)

HSP 1 Score: 111 bits (278), Expect = 2.480e-28
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSAV 258
            PASRYAL GVF+ +G  G RV VTGAG+DGVFRAS +E AL  DFS  ++DG+ VDA EMLSD+HG + YRANLVKV+AKRA++A+
Sbjct:  179 PASRYALCGVFIAKGADGIRVAVTGAGNDGVFRASALEQALSLDFSPAAVDGVTVDADEMLSDIHGDAAYRANLVKVMAKRALAAM 264
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BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: A0A4S0JHU4_9HYPH (Carbon monoxide dehydrogenase (Fragment) n=1 Tax=Mesorhizobium sp. M1C.F.Ca.ET.187.01.1.1 TaxID=2563923 RepID=A0A4S0JHU4_9HYPH)

HSP 1 Score: 106 bits (265), Expect = 3.160e-28
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSA 255
            PASRYA+VGVFV +G  G RV VTGAG DGVFR+ ++EAAL + F A SL+G+ V A  ++SD+H ++DYRANL+ V+AKRAV+A
Sbjct:   13 PASRYAIVGVFVAKGKDGVRVAVTGAGDDGVFRSKEIEAALAKSFDAASLNGVKVPAKNLMSDIHASADYRANLIAVMAKRAVAA 97
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BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: A8IDG7_AZOC5 (Carbon monoxide dehydrogenase medium subunit n=3 Tax=Azorhizobium TaxID=6 RepID=A8IDG7_AZOC5)

HSP 1 Score: 111 bits (277), Expect = 4.870e-28
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSAVM 261
            PASRYA+ GVFV QG +G RV VTGAG  GVFR S+ E AL  DF  ++LDG+ VD+A+M+SDLHG++DYRA+LVKV+A+RAV A M
Sbjct:  193 PASRYAMAGVFVAQGAEGVRVAVTGAGQGGVFRWSEAEEALAADFRPEALDGLSVDSADMMSDLHGSADYRAHLVKVMARRAVVASM 279
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BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: A0A6N1VEK5_9HYPH (Xanthine dehydrogenase family protein subunit M n=1 Tax=Oricola thermophila TaxID=2742145 RepID=A0A6N1VEK5_9HYPH)

HSP 1 Score: 110 bits (276), Expect = 4.920e-28
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSA 255
            PASRYA+ GVFV +G  G RV VTGAG+DGVFR  + EAAL  +FS D+LDG+ VD  +M+ DLHG ++YRANLVKV+AKRAV+A
Sbjct:  179 PASRYAMAGVFVAKGSGGVRVAVTGAGNDGVFRWKEAEAALGANFSPDALDGLSVDPGDMMEDLHGTAEYRANLVKVMAKRAVAA 263
[Close]
BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Match: UPI001C6A2574 (xanthine dehydrogenase family protein subunit M n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C6A2574)

HSP 1 Score: 110 bits (276), Expect = 4.920e-28
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSLDGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSA 255
            PASRYA+ GVFV +     RVGVTGAGSDGV+RASDME AL   FS D+LDG+ VD   MLSD+HG ++YRA+LVKV+AKRAV+A
Sbjct:  179 PASRYAMAGVFVAKKGGTVRVGVTGAGSDGVYRASDMEQALSGSFSPDALDGVSVDPGGMLSDIHGTAEYRAHLVKVMAKRAVAA 263
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100283.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0010AAFACF3.690e-3171.76xanthine dehydrogenase family protein subunit M n=... [more]
UPI001CBBB3087.180e-3168.60xanthine dehydrogenase family protein subunit M n=... [more]
A0A2E0IJ60_9HYPH1.150e-2966.28Carbon monoxide dehydrogenase n=2 Tax=Ahrensia sp.... [more]
A0A6L7LPD4_9RHOB6.410e-2968.24Xanthine dehydrogenase family protein subunit M n=... [more]
A0A2D7UBU2_9PROT8.280e-2968.24Carbon monoxide dehydrogenase n=2 Tax=SAR116 clust... [more]
A0A316FZU4_9RHOB2.480e-2866.28Carbon-monoxide dehydrogenase medium subunit n=1 T... [more]
A0A4S0JHU4_9HYPH3.160e-2861.18Carbon monoxide dehydrogenase (Fragment) n=1 Tax=M... [more]
A8IDG7_AZOC54.870e-2864.37Carbon monoxide dehydrogenase medium subunit n=3 T... [more]
A0A6N1VEK5_9HYPH4.920e-2864.71Xanthine dehydrogenase family protein subunit M n=... [more]
UPI001C6A25744.920e-2867.06xanthine dehydrogenase family protein subunit M n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100283contigM-pyrifera_M_contig100283:2..265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score111.3
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog438753.AZC_2937
Preferred nameMA20_39425
KEGG rclassRC02800
KEGG koko:K03519
KEGG ReactionR11168
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CO dehydrogenase flavoprotein C-terminal domain
EggNOG OGs1MUDB@1224,2TRA8@28211,3EYH4@335928,COG1319@1,COG1319@2
EC1.2.5.3
COG Functional cat.C
Best tax levelXanthobacteraceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.1635065-CDS-M-pyrifera_M_contig100283:1..2651622815498.1635065-CDS-M-pyrifera_M_contig100283:1..265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100283 2..265 +
1692277438.9028873-CDS-M-pyrifera_M_contig100283:1..2651692277438.9028873-CDS-M-pyrifera_M_contig100283:1..265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100283 2..265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100283.63.1prot_M-pyrifera_M_contig100283.63.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100283 2..265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100283.63.1

>prot_M-pyrifera_M_contig100283.63.1 ID=prot_M-pyrifera_M_contig100283.63.1|Name=mRNA_M-pyrifera_M_contig100283.63.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
PASRYALVGVFVVQGPQGARVGVTGAGSDGVFRASDMEAALDRDFSADSL
DGIDVDAAEMLSDLHGASDYRANLVKVLAKRAVSAVM*
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mRNA from alignment at M-pyrifera_M_contig100283:2..265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100283.63.1 ID=mRNA_M-pyrifera_M_contig100283.63.1|Name=mRNA_M-pyrifera_M_contig100283.63.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig100283:2..265+ (Macrocystis pyrifera P11B4 male)
CCGGCATCCCGATACGCCTTGGTCGGCGTATTCGTGGTGCAAGGTCCGCA
AGGGGCGAGGGTTGGTGTTACGGGTGCGGGTTCCGACGGTGTATTCCGGG
CATCCGACATGGAGGCAGCTCTTGACCGTGACTTCTCGGCCGACTCACTG
GACGGTATCGACGTGGACGCCGCCGAGATGCTGTCCGATCTCCATGGGGC
GTCCGACTACCGCGCCAATCTCGTGAAAGTGTTGGCCAAGCGGGCTGTCT
CGGCTGTGATGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100283:2..265+

>mRNA_M-pyrifera_M_contig100283.63.1 ID=mRNA_M-pyrifera_M_contig100283.63.1|Name=mRNA_M-pyrifera_M_contig100283.63.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig100283:2..265+ (Macrocystis pyrifera P11B4 male)
CCGGCATCCCGATACGCCTTGGTCGGCGTATTCGTGGTGCAAGGTCCGCA
AGGGGCGAGGGTTGGTGTTACGGGTGCGGGTTCCGACGGTGTATTCCGGG
CATCCGACATGGAGGCAGCTCTTGACCGTGACTTCTCGGCCGACTCACTG
GACGGTATCGACGTGGACGCCGCCGAGATGCTGTCCGATCTCCATGGGGC
GTCCGACTACCGCGCCAATCTCGTGAAAGTGTTGGCCAAGCGGGCTGTCT
CGGCTGTGATGTAGCCGGCATCCCGATACGCCTTGGTCGGCGTATTCGTG
GTGCAAGGTCCGCAAGGGGCGAGGGTTGGTGTTACGGGTGCGGGTTCCGA
CGGTGTATTCCGGGCATCCGACATGGAGGCAGCTCTTGACCGTGACTTCT
CGGCCGACTCACTGGACGGTATCGACGTGGACGCCGCCGAGATGCTGTCC
GATCTCCATGGGGCGTCCGACTACCGCGCCAATCTCGTGAAAGTGTTGGC
CAAGCGGGCTGTCTCGGCTGTGATGTAG
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