mRNA_M-pyrifera_M_contig10300.630.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig10300.630.1 vs. uniprot
Match: D8LF10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF10_ECTSI) HSP 1 Score: 538 bits (1387), Expect = 4.420e-181 Identity = 354/677 (52.29%), Postives = 422/677 (62.33%), Query Frame = 1
Query: 1 IGLATSFTLAVGMVEGARVSALKGDLRFPLRYALYNVFPSFVGGKVPPSSVASTMATPPPLRSCPRAAAHATNLRALRTAVAGCTVLTILFQISRAGNRGTEAYEQAVSEGREVPSLTANASGGTKGSNAGGGVVRLCGAEGLESALVAPR--RAEYRTPILPVVVSGPATSPRRGGC-SSDPGS-FLPDGARAAIAKYFPRPCYYRVDPRRLLSREAWQPVSAEVAAAVAGRKGEDVVLVIEADALSSDTPQGLLSSSVKAFPSRVSGSESRRKGWLGIDQAVWGMSMLRGLLEDGGGA-GRGRVAGVLLSERRL---DDVGAATVSIDARAALLLSVFSWAQQCVAEAEASEKKETAGRGVSPEEVGVAEEATVKAPEGTEDRRHVAPVAEIDAACAGSDSDNDINHGDPEDSSRGGTAGAAAE------------LGNNAPPELETRQM---ANTTARALALLEGLGRGVRLVVTADGQVWSTINRSVGRVSA-LLESLRSNFFHEEGGSRSRVLVYDTDDDESYRWLAAQMVRHGWVVARAGDHQDIRKPLGRFWGGAAGRDVPVLVHRRSDEKTLTATAGHLSRGAKGSPVCAVVHRWDCGAEARRLLLANRGA--PVARAAGRDVSTAVICTAEVGEDLFQFVRGQLRSGASPEQVQGVVDDLFGGFYDAE 1953
+GLATSF VGM EGA VSALKGDL+FP RYA+YN PSFVGGKVP SSVAS MATPPP+R+CPRAAAHA NLRALRTAVAG TVL+++FQ++ AG RG EAY+QAV++G EVPS +A+ G + GGVVRLCGA GLE ALVAP R YRTPILPVVVSG R GG SSDP S FL +GA +A+AK PRPCYYR+ R+ REAWQPV + +A A A ++VLV+EADA+SSD PQ L+S P V G E R LG DQAVWG++MLR LE+ G GR+A VLL+ERRL + TVSIDARAALLLSV SWA+QC + +A + A G S V P + R P AA A D P++ TA A + +A + + A+T AR L +LEG+GRGVR+ GQV ST+ RS+G VSA L+E+ R + G +RVLVYDTDDDES+RWLAA+M++ GW + R + +R G VPVLVH SDEKTLTA AGH+ +GA VCAVVH WDCG EARRLL+ R P A R VICTAEVGEDLFQFVR QL SGA+ EQVQ +DDLFG FY+ E
Sbjct: 31 LGLATSFVFVVGMAEGATVSALKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRGMEAYQQAVADGLEVPSWSASGFG----DGSAGGVVRLCGARGLEPALVAPMAGRGGYRTPILPVVVSGGGFGHRSGGWRSSDPASSFLSEGALSAVAKVSPRPCYYRIGGDRVFCREAWQPVVSALAEAGATSDSREIVLVMEADAVSSDAPQTLMSP-----PREVKGGEGR----LGEDQAVWGLAMLRRALEERRRERGAGRLASVLLAERRLVCAEGSTTTTVSIDARAALLLSVLSWAEQCHGDDDALADEANASPGNSGSSADGEPAGFVAEPIALGEDRD--PAGLTTAAAAADKLDTTEGFVAPDEELGADTAAVAEXXXXXXXXXXXXGVDGDATARADDDEQGPSASTAARVLVVLEGVGRGVRVAAARLGQVRSTMGRSLGAVSAWLVENGRRRPTTPDAGI-NRVLVYDTDDDESFRWLAAKMLKVGWAIERQTSER-LRNEAG----------VPVLVHSCSDEKTLTAAAGHVVKGAN---VCAVVHSWDCGVEARRLLVGARETVLPDEGRAARQPCAEVICTAEVGEDLFQFVRWQLLSGATTEQVQQGLDDLFGAFYETE 677
BLAST of mRNA_M-pyrifera_M_contig10300.630.1 vs. uniprot
Match: A0A6H5K3C7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C7_9PHAE) HSP 1 Score: 393 bits (1009), Expect = 2.200e-126 Identity = 273/568 (48.06%), Postives = 324/568 (57.04%), Query Frame = 1
Query: 271 FQISRAGNRGTEAYEQAVSEGREVPSLTANASGGTKGSNAGGGVVRLCGAEGLESALVAP--RRAEYRTPILPVVVSGPATSPRRGGC-SSDPGS-FLPDGARAAIAKYFPRPCYYRVDPRRLLSREAWQPVSAEVAAAVAGRKGEDVVLVIEADALSSDTPQGLLSSSVKAFPSRVSGSESRRKGWLGIDQAVWGMSMLRGLLEDGGGA-GRGRVAGVLLSERRLDDVGAATVSIDARAALLLSVFSWAQQCVAEAEASEKKETAGRGVSPEEVGVAEEATVKAPEGTEDRRHVAPVAEIDAACAGSDSDNDINHGDPEDSSRGGTAGAAAELGNNAPPELETRQMANTTARALALLEGLGRGVRLVVTADGQVWSTINRSVGRVSALLESLRSNFFHEEGGSRSRVLVYDTDDDESYRWLAAQMVRHGWVVARAGDHQDIRKPLGRFWGGAAGRDVPVLVHRRSDEKTLTATAGHLSRGAKGSPVCAVVHRWDCGAEARRLLLANRGA--PVARAAGRDVSTAVICTAEVGEDLFQFVRGQLRSGASPEQVQGVVDDLFGGFYDAE 1953
FQ++ AG RG EAY+QAV++G EVPS + + G + GGVVRLCGA GLE ALVAP R YRTPILPVVVSG R GG SSDP FL +GA +A+AK PRPCYYR+ R+ +EAWQPV + +A A A + VLV+EADA+SSD PQ L+S P V G E R LG DQAVWG++MLR LE+ G GR+A VLL+ERRL +VSIDARAALLLSV WA QC + +A + T V+ GV G E A VAE + G D D D E + A+T R L +LE +GRGVR+ GQV S + RS+G VSA L + RVLVYDT DDES+RWLAA+M++ GW V R + +R G VPVLVH SDEKTLTA AGH+ GA G VCAVVH WDCG EARRLL+ R P A R S VICTAEVGEDLFQFVR QL SGA+ +QVQ +DDLFG FY+ E
Sbjct: 11 FQVALAGGRGMEAYQQAVADGLEVPSFSPSGFG----DGSAGGVVRLCGARGLEPALVAPVAGRGGYRTPILPVVVSGGGFRHRSGGWRSSDPAPCFLSEGALSAVAKVSPRPCYYRIGGDRVFCQEAWQPVVSALAEAGATSDSRERVLVMEADAVSSDAPQALMSP-----PREVEGGEGR----LGEDQAVWGLAMLRRALEERRREQGAGRLASVLLAERRLV-CAEGSVSIDARAALLLSVLCWAGQCQGDDDALADEATTAAAVA----GVLGTTEGSVAPGEESGADTAAVAEEEEDTMGVDGDATARADDDEQG-----------------------RPASTAVRVLVVLERMGRGVRVAAARLGQVRSAMGRSLGAVSAWLAKNARRRPTTPDAAIKRVLVYDTHDDESFRWLAAKMLKVGWTVERQTSER-LRNEAG----------VPVLVHSCSDEKTLTAAAGHVVEGANGK-VCAVVHNWDCGVEARRLLVEARETVLPNEGRAARQPSVEVICTAEVGEDLFQFVRWQLLSGATTDQVQQGLDDLFGAFYETE 525
BLAST of mRNA_M-pyrifera_M_contig10300.630.1 vs. uniprot
Match: A0A6H5K1Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z0_9PHAE) HSP 1 Score: 144 bits (363), Expect = 6.820e-37 Identity = 75/106 (70.75%), Postives = 86/106 (81.13%), Query Frame = 1
Query: 1 IGLATSFTLAVGMVEGARVSALKGDLRFPLRYALYNVFPSFVGGKVPPSSVASTMATPPPLRSCPRAAAHATNLRALRTAVAGCTVLTILFQI-SRAGNRGTEAYE 315
+GLATSF VGM EGA VS +KGDL+FP RYA+YN PSFVGGKVP SSVAS MATPPP+R+CPRAAAHA NLRALRTAVAG TVL+++FQ+ SR G + T E
Sbjct: 31 LGLATSFVFVVGMAEGATVSTVKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQVRSRVGVQTTRKKE 136 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10300.630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10300.630.1 >prot_M-pyrifera_M_contig10300.630.1 ID=prot_M-pyrifera_M_contig10300.630.1|Name=mRNA_M-pyrifera_M_contig10300.630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=651bp IGLATSFTLAVGMVEGARVSALKGDLRFPLRYALYNVFPSFVGGKVPPSSback to top mRNA from alignment at M-pyrifera_M_contig10300:1279..9183+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig10300.630.1 ID=mRNA_M-pyrifera_M_contig10300.630.1|Name=mRNA_M-pyrifera_M_contig10300.630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7905bp|location=Sequence derived from alignment at M-pyrifera_M_contig10300:1279..9183+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig10300:1279..9183+ >mRNA_M-pyrifera_M_contig10300.630.1 ID=mRNA_M-pyrifera_M_contig10300.630.1|Name=mRNA_M-pyrifera_M_contig10300.630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3906bp|location=Sequence derived from alignment at M-pyrifera_M_contig10300:1279..9183+ (Macrocystis pyrifera P11B4 male)back to top |