mRNA_M-pyrifera_M_contig1030.628.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1030.628.1
Unique NamemRNA_M-pyrifera_M_contig1030.628.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: D7G0Q8_ECTSI (Hypothetical UPF0043 protein slr0305 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.430e-18
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1
Query:   13 IVAKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            +VAKTFC+DFLSIVLALGSGVVFGGVLQGAL+ST CATIASGLGFQLAR
Sbjct:  180 VVAKTFCVDFLSIVLALGSGVVFGGVLQGALVSTACATIASGLGFQLAR 228          
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: A0A836CC84_9STRA (Hypothetical UPF0043 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC84_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.750e-10
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   19 AKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            +KT C DFLS++LAL SG++FGGV++GA  S VCAT+AS +GFQLAR
Sbjct:  118 SKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLAR 164          
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: W7TU38_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU38_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.690e-9
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   13 IVAKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            +VAK  CLD L++VL L SG++FGGV +GAL STVCAT AS +GF LAR
Sbjct:  179 VVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 227          
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: A0A4D9CWB6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWB6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.620e-9
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   13 IVAKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            +VAK  CLD L++VL L SG++FGGV +GAL STVCAT AS +GF LAR
Sbjct:   83 VVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 131          
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: A0A7S3NJR5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJR5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.670e-9
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   19 AKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            AKT C+D L+ VLAL SGV+FGG++QGALIS+ CA + S L F LAR
Sbjct:  183 AKTLCIDALAFVLALASGVIFGGLIQGALISSTCAALGSSLPFLLAR 229          
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: F0Y2Z0_AURAN (Fucosyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Z0_AURAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.070e-7
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 CFRRIVAKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            C   IVAK  C+D L+  LA+ SGV+FGGV+ GAL++T CATI S + F LAR
Sbjct: 2242 CGAFIVAKVGCVDPLTFALAISSGVLFGGVVNGALVATACATIGSSVAFGLAR 2294          
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: A0A7S2HIK0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HIK0_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 2.730e-7
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   13 IVAKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            +VAK F +DFLSI LA  SG++FGGV QGAL+S   AT+ S +  QL+R
Sbjct:    1 VVAKVFLVDFLSIALAFSSGILFGGVFQGALVSAAGATVGSLVALQLSR 49          
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: A0A8J2WN29_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WN29_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.930e-7
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   16 VAKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            VAK  CLD L+ +LA+ SGV+FGGV++GAL +T CAT+ S + F +AR
Sbjct:  152 VAKVLCLDALTFLLAVSSGVLFGGVVKGALAATACATLGSTVAFGIAR 199          
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: A0A7S2R0Q0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0Q0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.940e-7
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   22 KTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            K FCLDF  ++LAL SG++FGGVLQGA  S + ATI S + F LA+
Sbjct:  166 KVFCLDFGGVILALSSGILFGGVLQGAAFSALSATIGSSVAFGLAK 211          
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Match: A0A7S0F829_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F829_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 1.300e-6
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   13 IVAKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQLAR 159
            +VAK F LD +SI LA  SG++FGGV +GA+IS V AT+ S   FQL+R
Sbjct:  168 VVAKVFLLDVISIALAFASGIIFGGVFEGAIISAVGATLGSLAAFQLSR 216          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1030.628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Q8_ECTSI1.430e-1891.84Hypothetical UPF0043 protein slr0305 n=2 Tax=Ectoc... [more]
A0A836CC84_9STRA3.750e-1065.96Hypothetical UPF0043 protein n=1 Tax=Tribonema min... [more]
W7TU38_9STRA2.690e-965.31Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A4D9CWB6_9STRA4.620e-965.31Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3NJR5_9STRA8.670e-963.83Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y2Z0_AURAN1.070e-756.60Fucosyltransferase n=1 Tax=Aureococcus anophageffe... [more]
A0A7S2HIK0_9EUKA2.730e-757.14Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A8J2WN29_9STRA6.930e-756.25Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2R0Q0_9STRA6.940e-758.70Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0F829_9EUKA1.300e-657.14Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1030contigM-pyrifera_M_contig1030:1073..1231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.8e-15
Seed eggNOG ortholog2880.D7G0Q8
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.2264092-CDS-M-pyrifera_M_contig1030:1072..12311622815534.2264092-CDS-M-pyrifera_M_contig1030:1072..1231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1030 1073..1231 +
1692277452.9987166-CDS-M-pyrifera_M_contig1030:1072..12311692277452.9987166-CDS-M-pyrifera_M_contig1030:1072..1231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1030 1073..1231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1030.628.1prot_M-pyrifera_M_contig1030.628.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1030 1073..1231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1030.628.1

>prot_M-pyrifera_M_contig1030.628.1 ID=prot_M-pyrifera_M_contig1030.628.1|Name=mRNA_M-pyrifera_M_contig1030.628.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
CFRRIVAKTFCLDFLSIVLALGSGVVFGGVLQGALISTVCATIASGLGFQ
LAR
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mRNA from alignment at M-pyrifera_M_contig1030:1073..1231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1030.628.1 ID=mRNA_M-pyrifera_M_contig1030.628.1|Name=mRNA_M-pyrifera_M_contig1030.628.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig1030:1073..1231+ (Macrocystis pyrifera P11B4 male)
TGCTTTCGAAGGATCGTCGCGAAGACGTTTTGCTTGGACTTTCTGTCCAT CGTCTTGGCGCTCGGGTCTGGAGTTGTATTCGGAGGCGTGTTGCAAGGGG CGCTGATTTCTACAGTGTGCGCGACGATCGCGTCCGGCCTTGGCTTCCAG TTGGCGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1030:1073..1231+

>mRNA_M-pyrifera_M_contig1030.628.1 ID=mRNA_M-pyrifera_M_contig1030.628.1|Name=mRNA_M-pyrifera_M_contig1030.628.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig1030:1073..1231+ (Macrocystis pyrifera P11B4 male)
TGCTTTCGAAGGATCGTCGCGAAGACGTTTTGCTTGGACTTTCTGTCCAT
CGTCTTGGCGCTCGGGTCTGGAGTTGTATTCGGAGGCGTGTTGCAAGGGG
CGCTGATTTCTACAGTGTGCGCGACGATCGCGTCCGGCCTTGGCTTCCAG
TTGGCGCGTTGCTTTCGAAGGATCGTCGCGAAGACGTTTTGCTTGGACTT
TCTGTCCATCGTCTTGGCGCTCGGGTCTGGAGTTGTATTCGGAGGCGTGT
TGCAAGGGGCGCTGATTTCTACAGTGTGCGCGACGATCGCGTCCGGCCTT
GGCTTCCAGTTGGCGCGT
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