mRNA_M-pyrifera_M_contig102963.627.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102963.627.1
Unique NamemRNA_M-pyrifera_M_contig102963.627.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: A0A517PPI9_9PLAN (ATP synthase subunit a n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517PPI9_9PLAN)

HSP 1 Score: 244 bits (624), Expect = 1.810e-79
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 FTTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTADSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            FTTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTADSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH
Sbjct:  157 FTTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTADSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 288
[Close]
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: A0A517X0J2_9PLAN (ATP synthase subunit a n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X0J2_9PLAN)

HSP 1 Score: 220 bits (561), Expect = 5.940e-70
Identity = 114/132 (86.36%), Postives = 123/132 (93.18%), Query Frame = 1 
Query:    1 FTTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTADSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            FTTFC VIMYG RE GF +FW+SLAPSMELPF +K+ L+PMIWVIEL GFLIKHAVLAIRLFANIMAGHTVIAVFLGFIA+TADS +WA+VMPSSIIAQ+LVGLLELFVAFLQAYVFAFLATLFIG AVHPH
Sbjct:  154 FTTFCTVIMYGTREQGFIQFWLSLAPSMELPFFMKLTLLPMIWVIELAGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIAMTADSGLWAIVMPSSIIAQILVGLLELFVAFLQAYVFAFLATLFIGAAVHPH 285
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BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: A0A517Q4D9_9PLAN (ATP synthase subunit a n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517Q4D9_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 7.490e-69
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 1 
Query:    1 FTTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTADSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            FTTFCAVIMYG RE G  RFW+SLAPSMELP  LK+IL+PMIWVIEL GFLIKHAVLAIRLFANIMAGHTVIAVFLGFIA+TAD+ MWA+VMPSSIIAQ+LVGLLELFVAFLQAYVFAFLATLFIG AV+PH
Sbjct:  157 FTTFCAVIMYGSREQGVIRFWLSLAPSMELPMALKVILLPMIWVIELAGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIAMTADTGMWAIVMPSSIIAQILVGLLELFVAFLQAYVFAFLATLFIGAAVNPH 288
[Close]
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: A0A355GHI7_9PLAN (ATP synthase subunit a n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GHI7_9PLAN)

HSP 1 Score: 213 bits (543), Expect = 3.270e-67
Identity = 113/132 (85.61%), Postives = 122/132 (92.42%), Query Frame = 1 
Query:    1 FTTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTADSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            FTTFCAV+ YG RE G  +FW+SLAP MELPF LKIILVPM+WVIEL GFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTA+S MWA+VMPSSI+AQVL+GLLELFVAFLQAYVFAFLATLFIG AV+PH
Sbjct:  155 FTTFCAVVFYGSREQGPVQFWLSLAPPMELPFFLKIILVPMLWVIELAGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTAESGMWAIVMPSSILAQVLIGLLELFVAFLQAYVFAFLATLFIGAAVNPH 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: A6BZC4_9PLAN (ATP synthase subunit a n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6BZC4_9PLAN)

HSP 1 Score: 209 bits (533), Expect = 1.070e-65
Identity = 111/132 (84.09%), Postives = 122/132 (92.42%), Query Frame = 1 
Query:    1 FTTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTADSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            FTTFCAV++YG RE G  +FW+SLAPSMELP  LK+IL+PMIWVIEL GFLIKHAVLAIRLFANIMAGHTVIAVFLGFIA+TAD+ MWA+VMPSSIIAQ+LVGLLELFVAFLQAYVFAFLATLFI  AV+PH
Sbjct:  155 FTTFCAVVIYGSREQGPIQFWLSLAPSMELPIGLKVILLPMIWVIELAGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIAMTADTGMWAIVMPSSIIAQILVGLLELFVAFLQAYVFAFLATLFISAAVNPH 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: A0A518IDH6_9PLAN (ATP synthase subunit a n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IDH6_9PLAN)

HSP 1 Score: 208 bits (529), Expect = 4.450e-65
Identity = 109/132 (82.58%), Postives = 121/132 (91.67%), Query Frame = 1 
Query:    1 FTTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTADSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            FTTFCAV+ +G +E G  +FW+SLAP MELP  LK++LVPMIW+IEL GFLIKHAVLAIRLFANIMAGHTVIAVFLGFIA+TADS MWA+VMPSSIIAQ+LVGLLELFVAFLQAYVFAFLATLFIG AV+PH
Sbjct:  156 FTTFCAVVFFGSKEQGPVQFWLSLAPPMELPLALKLVLVPMIWLIELAGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIAMTADSGMWAIVMPSSIIAQILVGLLELFVAFLQAYVFAFLATLFIGAAVNPH 287
[Close]
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: A0A5C9BS43_9BACT (ATP synthase subunit a (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9BS43_9BACT)

HSP 1 Score: 163 bits (412), Expect = 1.720e-47
Identity = 89/133 (66.92%), Postives = 107/133 (80.45%), Query Frame = 1 
Query:    4 TTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTA--DSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            T F  VI YG +ELGF  FW +L P M++P  LK +L+PMIW IEL+G  IKH VLA+RLFANIMAGHTVIAVFLGFIA+    ++ ++ +V PSSI+AQV VG+LELFVAFLQAY+F+FLATLFI TAVHPH
Sbjct:  148 TVFGTVIAYGSKELGFAGFWKALCPHMDVPGALKPLLIPMIWCIELLGLFIKHGVLAVRLFANIMAGHTVIAVFLGFIAMPGIVNTGLFWIVTPSSILAQVGVGMLELFVAFLQAYIFSFLATLFISTAVHPH 280
[Close]
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: A0A4V0XMW6_9BACT (ATP synthase subunit a n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A4V0XMW6_9BACT)

HSP 1 Score: 163 bits (412), Expect = 2.500e-47
Identity = 90/132 (68.18%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:    4 TTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTADSS-MWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            T F A + YG +EL F  FW +L P+M++P  LK +L+PMIW IEL+G  IKH VLA+RLFANIMAGHTVIAVFLGFIA  A S+ ++ VV P+SI AQ+ VG+LELFVAFLQAY+FAFLATLFIGTAVHPH
Sbjct:  163 TAFGATVFYGSKELSFVGFWKALCPTMDVPGALKPLLIPMIWGIELLGLFIKHGVLAVRLFANIMAGHTVIAVFLGFIATFAVSNPLFYVVTPASIAAQIGVGMLELFVAFLQAYIFAFLATLFIGTAVHPH 294
[Close]
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: UPI0019940249 (F0F1 ATP synthase subunit A n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019940249)

HSP 1 Score: 155 bits (392), Expect = 3.990e-44
Identity = 83/131 (63.36%), Postives = 102/131 (77.86%), Query Frame = 1 
Query:    7 TFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTAD-SSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            TF  V+ YG  + GF  +W SL P MELP +L I L+PMIWVIE  G LIKHAVLA+RLFAN++ GHTVI+VFLGFIA +AD  S+W +VMP+S I Q+ +GLLELFVAFLQAYVF+ + +LFI  AV+PH
Sbjct:  182 TFLHVVRYGSEQSGFVGYWKSLVPGMELPGVLAIFLIPMIWVIEAAGLLIKHAVLALRLFANLLGGHTVISVFLGFIAASADYGSIWWLVMPASTIGQLAIGLLELFVAFLQAYVFSMMTSLFISAAVNPH 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Match: UPI0019996846 (F0F1 ATP synthase subunit A n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI0019996846)

HSP 1 Score: 155 bits (391), Expect = 7.020e-44
Identity = 85/133 (63.91%), Postives = 103/133 (77.44%), Query Frame = 1 
Query:    4 TTFCAVIMYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLAIRLFANIMAGHTVIAVFLGFIALTA--DSSMWAVVMPSSIIAQVLVGLLELFVAFLQAYVFAFLATLFIGTAVHPH 396
            T F A + YG +ELGF  FW ++APSM++P LLK  L  +IWVIE VG  IKH VLAIRLFANIMAGHTV+A  LGFIA+    +S ++ VV P+SI  QV +G++EL VAFLQAY+F+FLATLFIGTAVHPH
Sbjct:  189 TAFGATVYYGSKELGFAGFWKAIAPSMDVPGLLKAPLFILIWVIEFVGLFIKHGVLAIRLFANIMAGHTVVAAILGFIAMDGVWNSGLYYVVTPASIFGQVAIGMMELGVAFLQAYIFSFLATLFIGTAVHPH 321
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102963.627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PPI9_9PLAN1.810e-79100.00ATP synthase subunit a n=6 Tax=Gimesia TaxID=16494... [more]
A0A517X0J2_9PLAN5.940e-7086.36ATP synthase subunit a n=2 Tax=Gimesia aquarii Tax... [more]
A0A517Q4D9_9PLAN7.490e-6987.12ATP synthase subunit a n=3 Tax=Gimesia TaxID=16494... [more]
A0A355GHI7_9PLAN3.270e-6785.61ATP synthase subunit a n=2 Tax=Planctomycetaceae T... [more]
A6BZC4_9PLAN1.070e-6584.09ATP synthase subunit a n=5 Tax=Planctomycetaceae T... [more]
A0A518IDH6_9PLAN4.450e-6582.58ATP synthase subunit a n=2 Tax=Gimesia TaxID=16494... [more]
A0A5C9BS43_9BACT1.720e-4766.92ATP synthase subunit a (Fragment) n=1 Tax=Planctom... [more]
A0A4V0XMW6_9BACT2.500e-4768.18ATP synthase subunit a n=2 Tax=Planctomycetes TaxI... [more]
UPI00199402493.990e-4463.36F0F1 ATP synthase subunit A n=1 Tax=Candidatus Sac... [more]
UPI00199968467.020e-4463.91F0F1 ATP synthase subunit A n=1 Tax=Planctomycetac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102963contigM-pyrifera_M_contig102963:3..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score195.3
Seed ortholog evalue1.7e-47
Seed eggNOG ortholog344747.PM8797T_28864
Preferred nameatpB
KEGG koko:K02108
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.it plays a direct role in the translocation of protons across the membrane
EggNOG OGs2IZP5@203682,COG0356@1,COG0356@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko03110
Exons1
Model size399
Cds size375
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.1794753-UTR-M-pyrifera_M_contig102963:2..261622815534.1794753-UTR-M-pyrifera_M_contig102963:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102963 3..26 +
1692277452.9770706-UTR-M-pyrifera_M_contig102963:2..261692277452.9770706-UTR-M-pyrifera_M_contig102963:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102963 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.190995-CDS-M-pyrifera_M_contig102963:26..4011622815534.190995-CDS-M-pyrifera_M_contig102963:26..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102963 27..401 +
1692277452.9884052-CDS-M-pyrifera_M_contig102963:26..4011692277452.9884052-CDS-M-pyrifera_M_contig102963:26..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102963 27..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102963.627.1prot_M-pyrifera_M_contig102963.627.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102963 27..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102963.627.1

>prot_M-pyrifera_M_contig102963.627.1 ID=prot_M-pyrifera_M_contig102963.627.1|Name=mRNA_M-pyrifera_M_contig102963.627.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MYGVRELGFFRFWMSLAPSMELPFLLKIILVPMIWVIELVGFLIKHAVLA
IRLFANIMAGHTVIAVFLGFIALTADSSMWAVVMPSSIIAQVLVGLLELF
VAFLQAYVFAFLATLFIGTAVHPH*
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mRNA from alignment at M-pyrifera_M_contig102963:3..401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102963.627.1 ID=mRNA_M-pyrifera_M_contig102963.627.1|Name=mRNA_M-pyrifera_M_contig102963.627.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig102963:3..401+ (Macrocystis pyrifera P11B4 male)
TTCACCACATTCTGTGCCGTCATCATGTACGGCGTCAGAGAACTGGGTTT
CTTCCGTTTCTGGATGTCGCTGGCACCGTCAATGGAACTGCCTTTTCTGC
TCAAGATTATTCTGGTCCCCATGATCTGGGTGATCGAGCTGGTCGGCTTT
CTGATTAAGCATGCCGTACTGGCCATTCGATTGTTTGCCAATATCATGGC
AGGTCATACCGTGATTGCCGTCTTCCTCGGCTTCATCGCTTTGACTGCTG
ATTCAAGTATGTGGGCCGTAGTGATGCCTTCCAGTATCATTGCCCAGGTC
CTCGTTGGTCTGCTGGAACTGTTCGTTGCATTCCTGCAGGCATATGTTTT
TGCGTTTCTTGCAACTCTGTTTATCGGAACCGCAGTACATCCTCACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102963:3..401+

>mRNA_M-pyrifera_M_contig102963.627.1 ID=mRNA_M-pyrifera_M_contig102963.627.1|Name=mRNA_M-pyrifera_M_contig102963.627.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig102963:3..401+ (Macrocystis pyrifera P11B4 male)
ATGTACGGCGTCAGAGAACTGGGTTTCTTCCGTTTCTGGATGTCGCTGGC
ACCGTCAATGGAACTGCCTTTTCTGCTCAAGATTATTCTGGTCCCCATGA
TCTGGGTGATCGAGCTGGTCGGCTTTCTGATTAAGCATGCCGTACTGGCC
ATTCGATTGTTTGCCAATATCATGGCAGGTCATACCGTGATTGCCGTCTT
CCTCGGCTTCATCGCTTTGACTGCTGATTCAAGTATGTGGGCCGTAGTGA
TGCCTTCCAGTATCATTGCCCAGGTCCTCGTTGGTCTGCTGGAACTGTTC
GTTGCATTCCTGCAGGCATATGTTTTTGCGTTTCTTGCAACTCTGTTTAT
CGGAACCGCAGTACATCCTCACTGAATGTACGGCGTCAGAGAACTGGGTT
TCTTCCGTTTCTGGATGTCGCTGGCACCGTCAATGGAACTGCCTTTTCTG
CTCAAGATTATTCTGGTCCCCATGATCTGGGTGATCGAGCTGGTCGGCTT
TCTGATTAAGCATGCCGTACTGGCCATTCGATTGTTTGCCAATATCATGG
CAGGTCATACCGTGATTGCCGTCTTCCTCGGCTTCATCGCTTTGACTGCT
GATTCAAGTATGTGGGCCGTAGTGATGCCTTCCAGTATCATTGCCCAGGT
CCTCGTTGGTCTGCTGGAACTGTTCGTTGCATTCCTGCAGGCATATGTTT
TTGCGTTTCTTGCAACTCTGTTTATCGGAACCGCAGTACATCCTCACTGA
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