mRNA_M-pyrifera_M_contig102928.621.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102928.621.1
Unique NamemRNA_M-pyrifera_M_contig102928.621.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: A0A443RKR7_9ACAR (SAP30-binding protein-like isoform X1 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443RKR7_9ACAR)

HSP 1 Score: 55.1 bits (131), Expect = 5.470e-7
Identity = 23/69 (33.33%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   22 GTPEESVTRRILQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVASNCPRPSYAPNPFLPD 228
            G    S+  +I ++ + + +G+ +N ++ K K F+NP I EK++A+CG+DE+ +N P   Y P+ + P+
Sbjct:  135 GRCANSLLEKISRLYEKKLEGRDMNASIQKRKDFRNPSIYEKLIAYCGIDELGTNYPPEIYDPHKWEPE 203          
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: A0A023FY10_AMBPA (Putative sap30-binding protein (Fragment) n=3 Tax=Amblyomma TaxID=6942 RepID=A0A023FY10_AMBPA)

HSP 1 Score: 53.9 bits (128), Expect = 1.210e-6
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   31 EESVTRRILQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVASNCPRPSYAPNPFLPD 228
            +E + R  L  RKLR  G+ +N ++   K F+NP I EK++A+CG+DE+ +N P  +Y P+ + PD
Sbjct:  125 QEKIAR--LYERKLRD-GRDMNASIQMRKDFRNPSIYEKLIAYCGIDELGTNYPPETYDPHSWGPD 187          
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: L7LSY2_RHIPC (Uncharacterized protein n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7LSY2_RHIPC)

HSP 1 Score: 52.8 bits (125), Expect = 3.310e-6
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   31 EESVTRRILQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVASNCPRPSYAPNPFLPD 228
            +E + R  L  RK+R  G+ +N ++   K F+NP I EK++A+CG+DE+ +N P  +Y P+ + PD
Sbjct:  105 QEKIAR--LYERKVRD-GRDMNASIQMRKDFRNPSIYEKLIAYCGIDELGTNYPPETYDPHSWGPD 167          
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: UPI00189C57B1 (SAP30-binding protein-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189C57B1)

HSP 1 Score: 52.8 bits (125), Expect = 3.330e-6
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   31 EESVTRRILQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVASNCPRPSYAPNPFLPD 228
            +E + R  L  RK+R  G+ +N ++   K F+NP I EK++A+CG+DE+ +N P  +Y P+ + PD
Sbjct:  114 QEKIAR--LYERKVRD-GRDMNASIQMRKDFRNPSIYEKLIAYCGIDELGTNYPPETYDPHSWGPD 176          
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: A0A131Z1N7_RHIAP (Transcriptional regulator protein n=6 Tax=Ixodidae TaxID=6939 RepID=A0A131Z1N7_RHIAP)

HSP 1 Score: 52.8 bits (125), Expect = 3.560e-6
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   31 EESVTRRILQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVASNCPRPSYAPNPFLPD 228
            +E + R  L  RK+R  G+ +N ++   K F+NP I EK++A+CG+DE+ +N P  +Y P+ + PD
Sbjct:  146 QEKIAR--LYERKVRD-GRDMNASIQMRKDFRNPSIYEKLIAYCGIDELGTNYPPETYDPHSWGPD 208          
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: UPI0006B0A1AD (SAP30-binding protein-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0A1AD)

HSP 1 Score: 50.8 bits (120), Expect = 1.840e-5
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 LEASPDG---GTPEESVTRRILQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVASNCPRPSYAPNPFLPD 228
            + A P G    T +E + R  L  +KLR + K +N ++   K F+NP I EK++AFCG+DE+ +N P   Y P+ + P+
Sbjct:  150 IPAEPPGRCSNTLQEKIAR--LYEKKLREE-KDMNISIQGRKDFRNPSIYEKLIAFCGIDEMGTNYPPEIYDPHKWGPE 225          
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: A0A6P7VUF0_IXOSC (SAP30-binding protein isoform X2 n=3 Tax=Ixodes TaxID=6944 RepID=A0A6P7VUF0_IXOSC)

HSP 1 Score: 50.1 bits (118), Expect = 3.080e-5
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   55 LQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVASNCPRPSYAPN 213
            L  RKLR  GK +N ++   K F+NP I EK++A+CG+DE+ +N P   Y P+
Sbjct:  143 LYERKLRD-GKDMNASIQTRKDFRNPSIYEKLIAYCGIDEMGTNYPPEVYDPH 194          
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: B7PRU5_IXOSC (SAP30-binding protein, putative n=3 Tax=Ixodes TaxID=6944 RepID=B7PRU5_IXOSC)

HSP 1 Score: 50.1 bits (118), Expect = 3.360e-5
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   55 LQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVASNCPRPSYAPN 213
            L  RKLR  GK +N ++   K F+NP I EK++A+CG+DE+ +N P   Y P+
Sbjct:  143 LYERKLRD-GKDMNASIQTRKDFRNPSIYEKLIAYCGIDEMGTNYPPEVYDPH 194          
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: A0A8C4ZY15_GADMO (SAP30 binding protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZY15_GADMO)

HSP 1 Score: 49.7 bits (117), Expect = 4.750e-5
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 LEASPDGGTP---EESVTRRILQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVASNCPRPSYAPNPFLPD 228
            + + P G  P   +E + +  L  RKL+ +G   N ++ K K F+NP I EK++ FCG+DE+ +N P+  + P+ +  D
Sbjct:  125 IPSEPAGRCPSHLQEKICK--LYERKLQ-EGFDTNNHIQKKKEFRNPSIYEKLIQFCGIDELGTNYPKDMFDPHGWSED 200          
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Match: A0A2N3N288_9PEZI (Uncharacterized protein n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3N288_9PEZI)

HSP 1 Score: 49.3 bits (116), Expect = 5.580e-5
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 LEASPDGGTPEESVTRRILQIRKLRAKGKSVNGNLHKSKAFQNPRILEKVVAFCGVDEVAS 183
            L  SP G +P  S+TR++    +L+ KG   N  L  S A +NP +L+K++AF G+D+ AS
Sbjct:  113 LPPSPPG-SPPPSLTRKVESFLELKDKGIHFNAKLESSSALRNPALLDKLLAFTGLDDTAS 172          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102928.621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A443RKR7_9ACAR5.470e-733.33SAP30-binding protein-like isoform X1 n=1 Tax=Dino... [more]
A0A023FY10_AMBPA1.210e-640.91Putative sap30-binding protein (Fragment) n=3 Tax=... [more]
L7LSY2_RHIPC3.310e-639.39Uncharacterized protein n=1 Tax=Rhipicephalus pulc... [more]
UPI00189C57B13.330e-639.39SAP30-binding protein-like n=1 Tax=Dermacentor sil... [more]
A0A131Z1N7_RHIAP3.560e-639.39Transcriptional regulator protein n=6 Tax=Ixodidae... [more]
UPI0006B0A1AD1.840e-537.97SAP30-binding protein-like n=1 Tax=Limulus polyphe... [more]
A0A6P7VUF0_IXOSC3.080e-545.28SAP30-binding protein isoform X2 n=3 Tax=Ixodes Ta... [more]
B7PRU5_IXOSC3.360e-545.28SAP30-binding protein, putative n=3 Tax=Ixodes Tax... [more]
A0A8C4ZY15_GADMO4.750e-534.18SAP30 binding protein n=2 Tax=Gadus morhua TaxID=8... [more]
A0A2N3N288_9PEZI5.580e-540.98Uncharacterized protein n=1 Tax=Lomentospora proli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102928contigM-pyrifera_M_contig102928:1..243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue8.6e-08
Seed eggNOG ortholog5786.XP_003286778.1
Preferred nameSAP30BP
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0016070,GO:0016071,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045111,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:1901360,GO:1902494,GO:1990904
EggNOG free text desc.HCNGP-like protein
EggNOG OGs3XBEE@554915,KOG2959@1,KOG2959@2759
COG Functional cat.K
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.9151838-CDS-M-pyrifera_M_contig102928:0..2431622815533.9151838-CDS-M-pyrifera_M_contig102928:0..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102928 1..243 -
1692277452.8739042-CDS-M-pyrifera_M_contig102928:0..2431692277452.8739042-CDS-M-pyrifera_M_contig102928:0..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102928 1..243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102928.621.1prot_M-pyrifera_M_contig102928.621.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102928 1..243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102928.621.1

>prot_M-pyrifera_M_contig102928.621.1 ID=prot_M-pyrifera_M_contig102928.621.1|Name=mRNA_M-pyrifera_M_contig102928.621.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
LEASPDGGTPEESVTRRILQIRKLRAKGKSVNGNLHKSKAFQNPRILEKV
VAFCGVDEVASNCPRPSYAPNPFLPDQSSPA
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mRNA from alignment at M-pyrifera_M_contig102928:1..243-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102928.621.1 ID=mRNA_M-pyrifera_M_contig102928.621.1|Name=mRNA_M-pyrifera_M_contig102928.621.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig102928:1..243- (Macrocystis pyrifera P11B4 male)
CTCGAGGCCTCGCCAGACGGCGGAACTCCAGAGGAGTCCGTCACGAGGAG AATCCTCCAGATCAGAAAGCTCAGAGCCAAAGGAAAGAGCGTCAACGGAA ACCTCCACAAGAGCAAAGCGTTCCAGAACCCCAGGATCCTCGAGAAGGTC GTGGCCTTCTGCGGCGTCGACGAAGTGGCCAGCAACTGCCCCCGGCCCTC CTACGCCCCCAACCCCTTCCTCCCCGACCAGTCCTCACCCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102928:1..243-

>mRNA_M-pyrifera_M_contig102928.621.1 ID=mRNA_M-pyrifera_M_contig102928.621.1|Name=mRNA_M-pyrifera_M_contig102928.621.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig102928:1..243- (Macrocystis pyrifera P11B4 male)
CTCGAGGCCTCGCCAGACGGCGGAACTCCAGAGGAGTCCGTCACGAGGAG
AATCCTCCAGATCAGAAAGCTCAGAGCCAAAGGAAAGAGCGTCAACGGAA
ACCTCCACAAGAGCAAAGCGTTCCAGAACCCCAGGATCCTCGAGAAGGTC
GTGGCCTTCTGCGGCGTCGACGAAGTGGCCAGCAACTGCCCCCGGCCCTC
CTACGCCCCCAACCCCTTCCTCCCCGACCAGTCCTCACCCGCCCTCGAGG
CCTCGCCAGACGGCGGAACTCCAGAGGAGTCCGTCACGAGGAGAATCCTC
CAGATCAGAAAGCTCAGAGCCAAAGGAAAGAGCGTCAACGGAAACCTCCA
CAAGAGCAAAGCGTTCCAGAACCCCAGGATCCTCGAGAAGGTCGTGGCCT
TCTGCGGCGTCGACGAAGTGGCCAGCAACTGCCCCCGGCCCTCCTACGCC
CCCAACCCCTTCCTCCCCGACCAGTCCTCACCCGCC
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