mRNA_M-pyrifera_M_contig100281.62.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100281.62.1
Unique NamemRNA_M-pyrifera_M_contig100281.62.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: L8GWG8_ACACA (Flagellar associated protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWG8_ACACA)

HSP 1 Score: 147 bits (370), Expect = 2.530e-42
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEAPEATYLDVILYSRAQV 345
            FA+RQFDDP ++GT++    K+AF + +N +F     +L +GYAPFCKH+FV NF GAKVGA+ ITD N+ LLRS Y AR A ELPVL RWF+  +VE P A YLD+ILYSRAQ+
Sbjct:   10 FAFRQFDDPAFSGTKLMGFDKQAFEDHINQLFNMGSATLVDGYAPFCKHLFVPNFTGAKVGAVTITDSNKHLLRSGYVARRASELPVLTRWFEAKDVEVPTAKYLDIILYSRAQI 124          
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: A0A8J9WSH0_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WSH0_9CHLO)

HSP 1 Score: 140 bits (353), Expect = 1.260e-39
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEAPEATYLDVILYSRAQV 345
            FA RQ+DDP Y+GTRI+   K+ FV+K++   A Q  +L +GYAPFCKHVFV NFVGAK+GA+PITD NR LLR  Y  R  +ELPVL RWF  +EV  PEA +LDVILYSR Q+
Sbjct:   13 FAIRQWDDPSYSGTRIS-YSKDGFVQKLHEFHA-QGANLVDGYAPFCKHVFVPNFVGAKLGALPITDANRHLLRCGYSRRRPEELPVLTRWFPADEVSVPEAKFLDVILYSREQL 125          
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: A0A7S4K762_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K762_9EUKA)

HSP 1 Score: 135 bits (339), Expect = 1.390e-37
Identity = 71/120 (59.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEAP---EATYLDVILYSRAQVGL 351
            FAYRQFDDPQY G +IT + KE F EK+N  + E   SL EGYAPFCKH+FV NF  AK+ ++ +TDENR  L S Y ART  ELPVL RWF K  +      +ATYLDVILYS+ QV L
Sbjct:   19 FAYRQFDDPQYGGAKIT-MSKEEFTEKLNKYYDEHSPSLKEGYAPFCKHLFVPNFTEAKISSLKLTDENRVHLVSGYHARTEKELPVLERWFPKESLPEELITKATYLDVILYSKEQVDL 137          
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: I0YJQ3_COCSC (Flagellar associated protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YJQ3_COCSC)

HSP 1 Score: 134 bits (337), Expect = 3.290e-37
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEAPEATYLDVILYSRAQV 345
            FA RQ+DDP Y+GTRI+   K  FVEK++  F  +   L +GYAPFCKHVFV NFVGA++GA+PITD+NR LLR  Y  R  +ELPVL RWF   +V+  EA +LDVILYSR Q+
Sbjct:   13 FAVRQWDDPNYSGTRIS-FSKTDFVEKIHE-FHSKGAKLVDGYAPFCKHVFVPNFVGARLGALPITDDNRHLLRCGYSRRRPEELPVLTRWFPAEDVQVLEAKFLDVILYSREQL 125          
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: A4S0Y2_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S0Y2_OSTLU)

HSP 1 Score: 133 bits (334), Expect = 1.160e-36
Identity = 70/117 (59.83%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEAPEATYLDVILYSRAQVGL 351
            FA RQ+DD +Y+GTRI    K  FV K+       K  L +GYAPFCKHVFVENFVGAKVG + IT  N  LL+S Y AR+  EL VL RWF  ++VEAPEAT+LDVILYSR Q+ L
Sbjct:   19 FAVRQWDDERYSGTRIAH-DKADFVRKIQEAHESGKSPLVDGYAPFCKHVFVENFVGAKVGNVEITKSNEHLLKSGYSARSEAELAVLTRWFQASDVEAPEATHLDVILYSREQLEL 134          
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: A0A383V540_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V540_TETOB)

HSP 1 Score: 134 bits (337), Expect = 1.420e-36
Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVE-APEATYLDVILYSRAQV 345
            FA RQ+DDP Y+GTRI    K  FVEKV+ +F EQ   L +GYAPFCKHVFV NFVGAKVGA+ IT ENR LLR  Y  R  +EL VL RWF ++ V+  P+A +LD+ILYSR Q+
Sbjct:   61 FAVRQWDDPNYSGTRIQ-YDKAEFVEKVHQLFKEQGAKLVDGYAPFCKHVFVPNFVGAKVGALAITPENRHLLRCAYTRRRPEELAVLTRWFPESAVQPVPQAQHLDIILYSRQQL 175          
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: A0A250XA46_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XA46_9CHLO)

HSP 1 Score: 133 bits (334), Expect = 2.680e-36
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEAPEATYLDVILYSRAQV 345
            FA RQ+DDP Y GTR++   KE F+ +V+ +F  Q  +L +GYAPFCKH+FVENFVGAK+GA+ IT+ NR  L S Y  R  +EL VL RWF  ++VE P A YLD+ILYSR Q+
Sbjct:   51 FALRQWDDPNYGGTRVS-YDKEQFLSRVHELFKAQGSALADGYAPFCKHIFVENFVGAKLGALKITESNRSKLNSGYTKRRPEELAVLTRWFRCSDVEVPVAKYLDLILYSREQL 164          
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: A0A061QMP0_9CHLO (Flagellar associated protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QMP0_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 2.790e-36
Identity = 66/115 (57.39%), Postives = 79/115 (68.70%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEAPEATYLDVILYSRAQV 345
            FA RQ+DDP Y+GTR++   K  FV++V   + E    L +GYAPFCKHV + NFVGAKVG + ITDENR LLR  Y  R   ELPVL RWF + +VE P A  LDVILYSR Q+
Sbjct:   19 FAIRQWDDPNYSGTRLSG-DKSEFVKRVQEYYNEGGRKLVDGYAPFCKHVIIPNFVGAKVGCLEITDENRSLLRCGYTRRRPGELPVLTRWFREQDVEVPTAKMLDVILYSREQI 132          
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: A0A061S2J7_9CHLO (Flagellar associated protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S2J7_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 2.790e-36
Identity = 66/115 (57.39%), Postives = 79/115 (68.70%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEAPEATYLDVILYSRAQV 345
            FA RQ+DDP Y+GTR++   K  FV++V   + E    L +GYAPFCKHV + NFVGAKVG + ITDENR LLR  Y  R   ELPVL RWF + +VE P A  LDVILYSR Q+
Sbjct:   19 FAIRQWDDPNYSGTRLSG-DKSEFVKRVQEYYNEGGRKLVDGYAPFCKHVIIPNFVGAKVGCLEITDENRSLLRCGYTRRRPGELPVLTRWFREQDVEVPTAKMLDVILYSREQI 132          
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Match: A0A2A9MBE9_9APIC (DUF3228 domain-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MBE9_9APIC)

HSP 1 Score: 130 bits (327), Expect = 1.630e-35
Identity = 68/118 (57.63%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFA-EQKLSLHEGYAPFCKHVFVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEA--PEATYLDVILYSRAQV 345
            F +RQFD P Y GTR+T + KE F++KVN + A E+ L   EGYAPFC+H+FV NFVGA   A+PIT EN  LLRS Y AR A ELPVL RWF    VE+    A +LD+ILYSR Q+
Sbjct:   26 FCFRQFDAPTYAGTRVTGISKEDFLKKVNEMAASEEGLEFVEGYAPFCRHIFVPNFVGALPDALPITRENEHLLRSGYVARRATELPVLTRWFPLRHVESLLKPANFLDLILYSREQL 143          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100281.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GWG8_ACACA2.530e-4259.13Flagellar associated protein n=1 Tax=Acanthamoeba ... [more]
A0A8J9WSH0_9CHLO1.260e-3961.74Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A7S4K762_9EUKA1.390e-3759.17Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
I0YJQ3_COCSC3.290e-3759.13Flagellar associated protein n=1 Tax=Coccomyxa sub... [more]
A4S0Y2_OSTLU1.160e-3659.83Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
A0A383V540_TETOB1.420e-3660.34Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A250XA46_9CHLO2.680e-3656.52Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A061QMP0_9CHLO2.790e-3657.39Flagellar associated protein (Fragment) n=1 Tax=Te... [more]
A0A061S2J7_9CHLO2.790e-3657.39Flagellar associated protein (Fragment) n=1 Tax=Te... [more]
A0A2A9MBE9_9APIC1.630e-3557.63DUF3228 domain-containing protein n=1 Tax=Besnoiti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100281contigM-pyrifera_M_contig100281:159..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score135.6
Seed ortholog evalue1.6e-29
Seed eggNOG ortholog248742.XP_005643166.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3228)
EggNOG OGs29VSF@1,2RXMS@2759,34HKT@3041,37UAZ@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.1089334-CDS-M-pyrifera_M_contig100281:158..2831622815498.1089334-CDS-M-pyrifera_M_contig100281:158..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100281 159..283 +
1692277438.8782685-CDS-M-pyrifera_M_contig100281:158..2831692277438.8782685-CDS-M-pyrifera_M_contig100281:158..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100281 159..283 +
1622815498.1221359-CDS-M-pyrifera_M_contig100281:351..5891622815498.1221359-CDS-M-pyrifera_M_contig100281:351..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100281 352..589 +
1692277438.8933861-CDS-M-pyrifera_M_contig100281:351..5891692277438.8933861-CDS-M-pyrifera_M_contig100281:351..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100281 352..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100281.62.1prot_M-pyrifera_M_contig100281.62.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100281 159..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100281.62.1

>prot_M-pyrifera_M_contig100281.62.1 ID=prot_M-pyrifera_M_contig100281.62.1|Name=mRNA_M-pyrifera_M_contig100281.62.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
FAYRQFDDPQYTGTRITTVGKEAFVEKVNAIFAEQKLSLHEGYAPFCKHV
FVENFVGAKVGAMPITDENRGLLRSDYKARTADELPVLVRWFDKNEVEAP
EATYLDVILYSRAQVGLWGR*
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mRNA from alignment at M-pyrifera_M_contig100281:159..589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100281.62.1 ID=mRNA_M-pyrifera_M_contig100281.62.1|Name=mRNA_M-pyrifera_M_contig100281.62.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=431bp|location=Sequence derived from alignment at M-pyrifera_M_contig100281:159..589+ (Macrocystis pyrifera P11B4 male)
TTCGCATACCGTCAGTTTGATGATCCGCAGTACACAGGGACCAGGATCAC AACAGTCGGCAAGGAGGCGTTCGTCGAGAAGGTCAACGCAATCTTTGCAG AGCAGAAGCTTTCTCTGCATGAGGGGTACGCCTCGTACTCCTTCCTCGCT CCGCTCCACCACTGCTACACCCCAGTGCTGACTTGCGAGGCAGCTACGCA CCCTTCTGCAAGCATGTCTTCGTGGAGAACTTCGTGGGTGCCAAGGTGGG TGCCATGCCGATCACTGACGAGAATCGAGGCCTCCTCAGGTCGGACTACA AGGCAAGGACCGCCGACGAGCTGCCTGTGCTCGTGCGGTGGTTCGACAAG AACGAAGTGGAGGCCCCTGAGGCGACGTACTTGGACGTCATCCTCTACAG CCGCGCTCAGGTAGGGCTCTGGGGCCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100281:159..589+

>mRNA_M-pyrifera_M_contig100281.62.1 ID=mRNA_M-pyrifera_M_contig100281.62.1|Name=mRNA_M-pyrifera_M_contig100281.62.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig100281:159..589+ (Macrocystis pyrifera P11B4 male)
TTCGCATACCGTCAGTTTGATGATCCGCAGTACACAGGGACCAGGATCAC
AACAGTCGGCAAGGAGGCGTTCGTCGAGAAGGTCAACGCAATCTTTGCAG
AGCAGAAGCTTTCTCTGCATGAGGGTTCGCATACCGTCAGTTTGATGATC
CGCAGTACACAGGGACCAGGATCACAACAGTCGGCAAGGAGGCGTTCGTC
GAGAAGGTCAACGCAATCTTTGCAGAGCAGAAGCTTTCTCTGCATGAGGG
CTACGCACCCTTCTGCAAGCATGTCTTCGTGGAGAACTTCGTGGGTGCCA
AGGTGGGTGCCATGCCGATCACTGACGAGAATCGAGGCCTCCTCAGGTCG
GACTACAAGGCAAGGACCGCCGACGAGCTGCCTGTGCTCGTGCGGTGGTT
CGACAAGAACGAAGTGGAGGCCCCTGAGGCGACGTACTTGGACGTCATCC
TCTACAGCCGCGCTCAGGTAGGGCTCTGGGGCCGCTGACTACGCACCCTT
CTGCAAGCATGTCTTCGTGGAGAACTTCGTGGGTGCCAAGGTGGGTGCCA
TGCCGATCACTGACGAGAATCGAGGCCTCCTCAGGTCGGACTACAAGGCA
AGGACCGCCGACGAGCTGCCTGTGCTCGTGCGGTGGTTCGACAAGAACGA
AGTGGAGGCCCCTGAGGCGACGTACTTGGACGTCATCCTCTACAGCCGCG
CTCAGGTAGGGCTCTGGGGCCGCTGA
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