mRNA_M-pyrifera_M_contig102924.620.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102924.620.1
Unique NamemRNA_M-pyrifera_M_contig102924.620.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: A0A1U7ZB45_NELNU (importin subunit alpha-9-like n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZB45_NELNU)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-8
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:   25 QVEALGRLRRLLGGAA-PPLQAVL---AHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMA 327
            +VEAL  LRRLL  +  PP++A L   A P  V+ L +        +    EAAWC+TNIAAG+   T A+L   P L+  L +    S M + +QCAWALGN+A
Sbjct:   99 KVEALRELRRLLSNSELPPVEAALKAGAVPALVQCLSF-----GPPDEQLLEAAWCLTNIAAGEPEQTKALLPALPLLIAHLGEK---SSMPVAEQCAWALGNVA 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: A0A822YAB3_NELNU (Importin subunit alpha n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822YAB3_NELNU)

HSP 1 Score: 61.6 bits (148), Expect = 1.400e-8
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:   25 QVEALGRLRRLLGGAA-PPLQAVL---AHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMA 327
            +VEAL  LRRLL  +  PP++A L   A P  V+ L +        +    EAAWC+TNIAAG+   T A+L   P L+  L +    S M + +QCAWALGN+A
Sbjct:   99 KVEALRELRRLLSNSELPPVEAALKAGAVPALVQCLSF-----GPPDEQLLEAAWCLTNIAAGEPEQTKALLPALPLLIAHLGEK---SSMPVAEQCAWALGNVA 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: A0A835LGI7_9MAGN (Importin subunit alpha n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LGI7_9MAGN)

HSP 1 Score: 61.6 bits (148), Expect = 1.410e-8
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:   25 QVEALGRLRRLLGGA-APPLQAVLAHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMAACCPSCRTALLSLSA 372
            ++EAL  LRRLL  +  PP++A +    AV  L   L      E    EAAWC+TNIAAG+   T A+L   P L+  L +    S M + +QCAWALGN+A      R  LLS  A
Sbjct:   93 KIEALRHLRRLLSKSDVPPVEAAI-EAGAVSVLTECLSFGSPDE-QLLEAAWCLTNIAAGEPEQTKALLPAVPLLIAHLGEK---SSMPVAEQCAWALGNVAGEGEELRNVLLSQGA 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: A0A484KFE9_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KFE9_9ASTE)

HSP 1 Score: 60.1 bits (144), Expect = 3.350e-8
Identity = 50/120 (41.67%), Postives = 65/120 (54.17%), Query Frame = 1 
Query:   25 QVEALGRLRRLLGGAA-PPLQAVL---AHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMAACCPSCRTALLSLSA 372
            +V AL  LRRLL  +A PP++A L   A P  V  L +      + EA     AWC+TNIAAG A  T A+L   P L+  L +    S + + +QCAWALGN+A      R+ LLS  A
Sbjct:   59 RVNALRELRRLLSRSAYPPVEAALEAGAIPLLVECLSFGSPDEQLLEA-----AWCLTNIAAGRAEETKALLPALPWLIAHLGEK---SSLTVAEQCAWALGNVAGEGEEFRSTLLSQGA 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: A0A3S3PQD5_9MAGN (Importin subunit alpha n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3PQD5_9MAGN)

HSP 1 Score: 60.5 bits (145), Expect = 3.570e-8
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:   25 QVEALGRLRRLLGGAA-PPLQAVLAHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMAACCPSCRTALLSLSA 372
            +V+ L  LRRLL  +  PP++A L    A+  L   L      E    EAAWC+TNIAAG+   T A+L   P L+  L +    S M + +QCAWALGN+A  C   R  LL+  A
Sbjct:  105 KVDLLHDLRRLLSRSEIPPIEAAL-QAGAIPILAQCLSFGSPDE-QLLEAAWCLTNIAAGEPEQTKALLPALPLLVAHLGEK---SSMPVAEQCAWALGNVAGECEELRNILLAQGA 216
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: A0A7J6WBU8_THATH (Importin subunit alpha-9 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J6WBU8_THATH)

HSP 1 Score: 60.1 bits (144), Expect = 4.560e-8
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   25 QVEALGRLRRLLGGA-APPLQAVLAHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMA 327
            ++EAL  LRRLL  +  PP++AV+    AV  L   L      E    EAAWC+TNIAAG+   T A+L   P L+  L +    S M + +QCAWALGN+A
Sbjct:  248 KIEALRHLRRLLSKSDVPPVEAVVKAG-AVPVLTQCLSFGSPDE-QLLEAAWCLTNIAAGEPEQTNALLPALPLLIAHLGEK---SSMPVAEQCAWALGNVA 344
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: A0A328DLZ9_9ASTE (Importin subunit alpha n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328DLZ9_9ASTE)

HSP 1 Score: 60.1 bits (144), Expect = 4.860e-8
Identity = 50/120 (41.67%), Postives = 65/120 (54.17%), Query Frame = 1 
Query:   25 QVEALGRLRRLLGGAA-PPLQAVL---AHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMAACCPSCRTALLSLSA 372
            +V AL  LRRLL  +A PP++A L   A P  V  L +      + EA     AWC+TNIAAG A  T A+L   P L+  L +    S + + +QCAWALGN+A      R+ LLS  A
Sbjct:  100 RVNALRELRRLLSRSAYPPVEAALEAGAIPLLVECLSFGSPDEQLLEA-----AWCLTNIAAGRAEETKALLPALPWLIAHLGEK---SSLTVAEQCAWALGNVAGEGEEFRSTLLSQGA 211
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: UPI001C4ECAF1 (importin subunit alpha-9 n=3 Tax=Proteaceae TaxID=4328 RepID=UPI001C4ECAF1)

HSP 1 Score: 59.7 bits (143), Expect = 6.620e-8
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:   25 QVEALGRLRRLLGGAA-PPLQAVL---AHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMA 327
            +VE L  LRRLL  +  PP++A L   A P  V+ L + L    + EA     AWC+TNIAAG+   T A+L   P L+  L +    S M + +QCAWALGN+A
Sbjct:  100 KVECLCDLRRLLSKSEIPPVEAALKAGAVPILVQCLSFGLPDEQLLEA-----AWCLTNIAAGEPEQTKALLPALPLLIAHLGEK---SSMPVAEQCAWALGNVA 196
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: UPI0018ADE0AE (importin subunit alpha-9 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADE0AE)

HSP 1 Score: 59.7 bits (143), Expect = 6.630e-8
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:   31 EALGRLRRLLGGA-APPLQAVLAHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMAACCPSCRTALLSLSA 372
            E L  LRRLL  + APP+ A + H  A+  L   L      E    EAAWC+TNIAAG++ AT ++L   P L+  L +    S + + +QCAWALGN+A      R+ LL+  A
Sbjct:  106 EILRDLRRLLSKSDAPPIDAAI-HAGAIPVLVQCLHFGTPDE-QLLEAAWCLTNIAAGESEATKSLLPALPLLIAHLGEK---SSLPVAEQCAWALGNVAGEGEELRSVLLAQGA 215
[Close]
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Match: A0A5P1E9G5_ASPOF (Importin subunit alpha n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E9G5_ASPOF)

HSP 1 Score: 59.3 bits (142), Expect = 9.040e-8
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:   28 VEALGRLRRLLGGA-APPLQAVL---AHPRAVRTLQWYLEKPHVSEAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQCAWALGNMAACCPSCRTALLSLSA 372
            VE L  LRRLL  +  PP+ A L   A P  V+ L +       ++   +EAAWC+TNIAAG+   T A+L   P L+  L +    S M + +QCAWALGN+A      R  LL+  A
Sbjct:  101 VEILCTLRRLLSRSDIPPIGAALQAGAVPALVQCLSF-----GSADEQLREAAWCLTNIAAGEPEETKALLPALPLLIAHLGEK---SSMPVAEQCAWALGNVAGEGEELRNVLLAQGA 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102924.620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U7ZB45_NELNU1.060e-842.86importin subunit alpha-9-like n=1 Tax=Nelumbo nuci... [more]
A0A822YAB3_NELNU1.400e-842.86Importin subunit alpha n=1 Tax=Nelumbo nucifera Ta... [more]
A0A835LGI7_9MAGN1.410e-841.88Importin subunit alpha n=1 Tax=Coptis chinensis Ta... [more]
A0A484KFE9_9ASTE3.350e-841.67Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A3S3PQD5_9MAGN3.570e-841.03Importin subunit alpha n=1 Tax=Cinnamomum micranth... [more]
A0A7J6WBU8_THATH4.560e-844.12Importin subunit alpha-9 n=2 Tax=Mesangiospermae T... [more]
A0A328DLZ9_9ASTE4.860e-841.67Importin subunit alpha n=1 Tax=Cuscuta australis T... [more]
UPI001C4ECAF16.620e-842.86importin subunit alpha-9 n=3 Tax=Proteaceae TaxID=... [more]
UPI0018ADE0AE6.630e-840.87importin subunit alpha-9 n=1 Tax=Dioscorea cayenne... [more]
A0A5P1E9G5_ASPOF9.040e-840.34Importin subunit alpha n=1 Tax=Asparagus officinal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102924contigM-pyrifera_M_contig102924:199..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.7
Seed ortholog evalue3.5e-08
Seed eggNOG ortholog4432.XP_010245001.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048471,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594
EggNOG free text desc.Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope
EggNOG OGs37KYH@33090,3GAZA@35493,COG5064@1,KOG0166@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.8762336-CDS-M-pyrifera_M_contig102924:198..5701622815533.8762336-CDS-M-pyrifera_M_contig102924:198..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102924 199..570 +
1692277452.8596208-CDS-M-pyrifera_M_contig102924:198..5701692277452.8596208-CDS-M-pyrifera_M_contig102924:198..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102924 199..570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102924.620.1prot_M-pyrifera_M_contig102924.620.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102924 199..570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102924.620.1

>prot_M-pyrifera_M_contig102924.620.1 ID=prot_M-pyrifera_M_contig102924.620.1|Name=mRNA_M-pyrifera_M_contig102924.620.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
MDYHAHAAQVEALGRLRRLLGGAAPPLQAVLAHPRAVRTLQWYLEKPHVS
EAHKKEAAWCVTNIAAGDASATAAVLSTAPALLRLLRDPLHVSGMELKDQ
CAWALGNMAACCPSCRTALLSLSA
back to top

mRNA from alignment at M-pyrifera_M_contig102924:199..570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102924.620.1 ID=mRNA_M-pyrifera_M_contig102924.620.1|Name=mRNA_M-pyrifera_M_contig102924.620.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig102924:199..570+ (Macrocystis pyrifera P11B4 male)
ATGGACTACCACGCACACGCAGCCCAGGTGGAGGCATTGGGGCGGCTGCG
GCGGCTGTTGGGTGGCGCGGCCCCCCCCCTGCAGGCGGTGCTCGCCCACC
CCCGTGCAGTGCGAACGCTGCAGTGGTATCTGGAGAAGCCGCACGTGAGC
GAGGCGCACAAGAAGGAGGCGGCCTGGTGCGTGACGAACATTGCTGCAGG
CGACGCCTCTGCCACTGCAGCGGTGCTGTCCACCGCCCCCGCACTCCTCC
GCCTCCTCCGCGACCCTCTGCACGTGTCGGGCATGGAGCTGAAGGACCAG
TGCGCCTGGGCGCTGGGCAACATGGCTGCTTGCTGCCCTTCTTGCAGGAC
TGCGCTGCTTTCGCTCTCTGCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102924:199..570+

>mRNA_M-pyrifera_M_contig102924.620.1 ID=mRNA_M-pyrifera_M_contig102924.620.1|Name=mRNA_M-pyrifera_M_contig102924.620.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig102924:199..570+ (Macrocystis pyrifera P11B4 male)
ATGGACTACCACGCACACGCAGCCCAGGTGGAGGCATTGGGGCGGCTGCG
GCGGCTGTTGGGTGGCGCGGCCCCCCCCCTGCAGGCGGTGCTCGCCCACC
CCCGTGCAGTGCGAACGCTGCAGTGGTATCTGGAGAAGCCGCACGTGAGC
GAGGCGCACAAGAAGGAGGCGGCCTGGTGCGTGACGAACATTGCTGCAGG
CGACGCCTCTGCCACTGCAGCGGTGCTGTCCACCGCCCCCGCACTCCTCC
GCCTCCTCCGCGACCCTCTGCACGTGTCGGGCATGGAGCTGAAGGACCAG
TGCGCCTGGGCGCTGGGCAACATGGCTGCTTGCTGCCCTTCTTGCAGGAC
TGCGCTGCTTTCGCTCTCTGCAATGGACTACCACGCACACGCAGCCCAGG
TGGAGGCATTGGGGCGGCTGCGGCGGCTGTTGGGTGGCGCGGCCCCCCCC
CTGCAGGCGGTGCTCGCCCACCCCCGTGCAGTGCGAACGCTGCAGTGGTA
TCTGGAGAAGCCGCACGTGAGCGAGGCGCACAAGAAGGAGGCGGCCTGGT
GCGTGACGAACATTGCTGCAGGCGACGCCTCTGCCACTGCAGCGGTGCTG
TCCACCGCCCCCGCACTCCTCCGCCTCCTCCGCGACCCTCTGCACGTGTC
GGGCATGGAGCTGAAGGACCAGTGCGCCTGGGCGCTGGGCAACATGGCTG
CTTGCTGCCCTTCTTGCAGGACTGCGCTGCTTTCGCTCTCTGCA
back to top